Rroxscaffold_7G00201920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000269
Physical Location & Seq
Forward (+)
49741633 .. 49742727
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201920.1

Sequence Viewer

Length: 492 bp
ATGGAGGCCCCCGAAAGAGTACCCGAATCGCCGCCTCTAAAGCATCGGCCGCGACGGCCTCTCGAGGTCTTGAACCAAAATTCTCCAATTTTGGAGTCCGCAAAGAAAACTTCGTTGACGGCACCGAAACGGTGGTTGAGCTTGCGAAAAGAGAAGGCACTAGAGGATTTAGAGTTGTCCGCCTCACCCGCCAAAGCTAAAGAGGTGAAGGATCGAAATAAGCTCATCATGAAGAAGAAAGCCTTCGGTCGTTCCATTAGCTTTTTGAACTACCCACCCCAATGCATCTACTATAAATATGCACGAAAGGAGATTGAAATGGATGCAAGTGAATTTGAAAATGTGATGGGGTTGAAGAATGTTGGGTCCGAGGTCGTCTTTAAAGGTTCCACTAATGATCACCCCGAGTTGATGGCGATAATAGACTCCTTGTGTGGTAAGGATAAGAAGATCAGTTTAAGGGATGTACAGACCTACCCGAAAGATACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.6

Weight (kDa)

9.43

Isoelectric Point (pI)

56.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 121
AccII CGCG 1 cut(s) 52
AciI CCGC 5 cut(s) 32, 50, 99, 180, 189
AclWI GGATC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 47
AcsI RAATTY 2 cut(s) 79, 332
AfaI GTAC 2 cut(s) 21, 468
AgsI TTSAA 5 cut(s) 73, 268, 317, 338, 355
AluBI AGCT 4 cut(s) 141, 197, 223, 261
AluI AGCT 4 cut(s) 141, 197, 223, 261
AlwI GGATC 1 cut(s) 219
Ama87I CYCGRG 2 cut(s) 62, 404
AoxI GGCC 3 cut(s) 6, 47, 56
ApoI RAATTY 2 cut(s) 79, 332
Asp700I GAANNNNTTC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 7, 366
AsuHPI GGTGA 3 cut(s) 177, 217, 392
AvaI CYCGRG 2 cut(s) 62, 404
AvaII GGWCC 1 cut(s) 366
BanI GGYRCC 1 cut(s) 121
BccI CCATC 2 cut(s) 340, 406
BceAI ACGGC 2 cut(s) 71, 135
BclI TGATCA 1 cut(s) 397
BfaI CTAG 1 cut(s) 161
BglI GCCNNNNNGGC 1 cut(s) 55
BisI GCNGC 2 cut(s) 32, 50
BlsI GCNGC 2 cut(s) 33, 51
Bme18I GGWCC 1 cut(s) 366
BmeT110I CYCGRG 2 cut(s) 62, 404
BmgT120I GGNCC 2 cut(s) 7, 366
BmiI GGNNCC 4 cut(s) 9, 123, 367, 388
BmsI GCATC 3 cut(s) 52, 294, 313
BsaAI YACGTR 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 2 cut(s) 328, 469
BseX3I CGGCCG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 52
Bsh1285I CGRYCG 2 cut(s) 50, 250
BshFI GGCC 3 cut(s) 8, 49, 58
BshNI GGYRCC 1 cut(s) 121
BsiEI CGRYCG 2 cut(s) 50, 250
BsiHKCI CYCGRG 2 cut(s) 62, 404
BsnI GGCC 3 cut(s) 8, 49, 58
BsoBI CYCGRG 2 cut(s) 62, 404
Bsp1407I TGTACA 1 cut(s) 466
Bsp143I GATC 3 cut(s) 211, 397, 450
BspACI CCGC 5 cut(s) 32, 50, 99, 180, 189
BspANI GGCC 3 cut(s) 8, 49, 58
BspFNI CGCG 1 cut(s) 52
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 4 cut(s) 9, 123, 367, 388
BspPI GGATC 1 cut(s) 219
BspT107I GGYRCC 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 466
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 3 cut(s) 211, 397, 450
Bst4CI ACNGT 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 466
BstBAI YACGTR 1 cut(s) 489
BstC8I GCNNGC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 328, 469
BstFNI CGCG 1 cut(s) 52
BstKTI GATC 3 cut(s) 214, 400, 453
BstMBI GATC 3 cut(s) 211, 397, 450
BstMCI CGRYCG 2 cut(s) 50, 250
BstMWI GCNNNNNNNGC 4 cut(s) 40, 49, 55, 188
BstSNI TACGTA 1 cut(s) 489
BstUI CGCG 1 cut(s) 52
BstZI CGGCCG 1 cut(s) 47
BsuRI GGCC 3 cut(s) 8, 49, 58
BtsCI GGATG 2 cut(s) 328, 469
Cac8I GCNNGC 1 cut(s) 143
CciI TCATGA 1 cut(s) 228
Cfr13I GGNCC 2 cut(s) 7, 366
Csp6I GTAC 2 cut(s) 20, 467
CviAII CATG 1 cut(s) 229
CviJI RGCY 8 cut(s) 8, 49, 58, 141, 197, 223, 242, 261
CviKI_1 RGCY 8 cut(s) 8, 49, 58, 141, 197, 223, 242, 261
CviQI GTAC 2 cut(s) 20, 467
DpnI GATC 3 cut(s) 213, 399, 452
DpnII GATC 3 cut(s) 211, 397, 450
DraI TTTAAA 1 cut(s) 382
EaeI YGGCCR 1 cut(s) 47
EagI CGGCCG 1 cut(s) 47
EciI GGCGGA 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 47
Eco105I TACGTA 1 cut(s) 489
Eco47I GGWCC 1 cut(s) 366
Eco52I CGGCCG 1 cut(s) 47
Eco88I CYCGRG 2 cut(s) 62, 404
EcoO109I RGGNCCY 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 1 cut(s) 232
FaiI YATR 3 cut(s) 230, 294, 300
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 1 cut(s) 228
FauI CCCGC 1 cut(s) 196
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 2 cut(s) 32, 50
FokI GGATG 2 cut(s) 335, 476
Fsp4HI GCNGC 2 cut(s) 32, 50
FspBI CTAG 1 cut(s) 161
GluI GCNGC 2 cut(s) 32, 50
HaeIII GGCC 3 cut(s) 8, 49, 58
Hin1II CATG 1 cut(s) 232
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 3 cut(s) 26, 95, 425
HphI GGTGA 3 cut(s) 177, 217, 392
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 3 cut(s) 62, 70, 229
Hpy8I GTNNAC 1 cut(s) 117
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 3 cut(s) 148, 202, 253
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 3 cut(s) 285, 302, 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 49, 55, 188
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 3 cut(s) 211, 397, 450
LweI GCATC 3 cut(s) 52, 294, 313
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 488
MalI GATC 3 cut(s) 213, 399, 452
MboI GATC 3 cut(s) 211, 397, 450
MboII GAAGA 4 cut(s) 244, 247, 367, 460
MluCI AATT 3 cut(s) 79, 87, 332
MlyI GAGTC 2 cut(s) 104, 419
MnlI CCTC 7 cut(s) 45, 58, 69, 157, 193, 196, 364
Mph1103I ATGCAT 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 242
MseI TTAA 2 cut(s) 381, 458
MslI CAYNNNNRTG 1 cut(s) 280
MvnI CGCG 1 cut(s) 52
MwoI GCNNNNNNNGC 4 cut(s) 40, 49, 55, 188
NdeII GATC 3 cut(s) 211, 397, 450
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 4 cut(s) 9, 123, 367, 388
NsiI ATGCAT 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 62
PagI TCATGA 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 33, 51
PleI GAGTC 2 cut(s) 103, 419
PpsI GAGTC 2 cut(s) 103, 419
Ppu21I YACGTR 1 cut(s) 489
PspN4I GGNNCC 4 cut(s) 9, 123, 367, 388
PspPI GGNCC 2 cut(s) 7, 366
RsaI GTAC 2 cut(s) 21, 468
RsaNI GTAC 2 cut(s) 20, 467
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 2 cut(s) 381, 458
SatI GCNGC 2 cut(s) 32, 50
Sau3AI GATC 3 cut(s) 211, 397, 450
Sau96I GGNCC 2 cut(s) 7, 366
SchI GAGTC 2 cut(s) 104, 419
SfaNI GCATC 3 cut(s) 52, 294, 313
SfiI GGCCNNNNNGGCC 1 cut(s) 55
Sfr274I CTCGAG 1 cut(s) 62
SinI GGWCC 1 cut(s) 366
SlaI CTCGAG 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SnaBI TACGTA 1 cut(s) 489
Sse9I AATT 3 cut(s) 79, 87, 332
SsiI CCGC 5 cut(s) 32, 50, 99, 180, 189
SspMI CTAG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 132
TaiI ACGT 1 cut(s) 491
TaqI TCGA 2 cut(s) 63, 214
TaqII GACCGA 1 cut(s) 236
TasI AATT 3 cut(s) 79, 87, 332
TatI WGTACW 1 cut(s) 466
TauI GCSGC 2 cut(s) 34, 52
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 2 cut(s) 381, 458
Tru9I TTAA 2 cut(s) 381, 458
TspDTI ATGAA 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 366
XapI RAATTY 2 cut(s) 79, 332
XhoI CTCGAG 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 242
XspI CTAG 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.