Rh6AG088500

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000269
Physical Location & Seq
Reverse (-)
13212876 .. 13213202
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG088500.1

Sequence Viewer

Length: 327 bp
ATGAAGAAAGTGGATGCCAACCCCATGACCAAGAGTAACATAGAGAAGATTGGTAACTTCAACGTCAATGGAGATCGGGAGGAGGCTGACAAAGGAGTGCTAAGGTTTGTTTATGATGTGTCAGCTGAAAAGAAGGAGACCATTGTGGATAATGAAAATTTCTTCACTAGTCGAAAAACAATTTGGTCACTTAAACCTAACGGATGGGTTGAAGATGATATTATCAAATTGTTTAGTGATTATCTATTTCTAGGACACTTTCCAGGCAATAGATGTTGTTACTCCACAACATACTTCTATATATCAGAAGATGAAAAGTTACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005912 GO:0005924 GO:0005925 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006807 GO:0006915 GO:0006919 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0012505 GO:0016020 GO:0016787 GO:0016925 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0030055 GO:0030162 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032270 GO:0032446 GO:0036211 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043280 GO:0043281 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045862 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051336 GO:0051345 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0065007 GO:0065009 GO:0070011 GO:0070013 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070161 GO:0070646 GO:0070647 GO:0071704 GO:0080090 GO:0097190 GO:0140096 GO:1901564 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000116 GO:2001056 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

108

Amino Acids

12.61

Weight (kDa)

5.16

Isoelectric Point (pI)

18.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 157
AgsI TTSAA 2 cut(s) 61, 212
AhlI ACTAGT 1 cut(s) 167
AjnI CCWGG 1 cut(s) 262
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 157
BccI CCATC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 131
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 2 cut(s) 168, 251
Bme1390I CCNGG 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 4
Bpu10I CCTNAGC 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 131
BseBI CCWGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 19, 209
BseRI GAGGAG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 73
BspTNI GGTCTC 1 cut(s) 131
BssMI GATC 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 2 cut(s) 19, 209
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 73
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BtsCI GGATG 2 cut(s) 19, 209
CviAII CATG 1 cut(s) 25
CviJI RGCY 2 cut(s) 86, 125
CviKI_1 RGCY 2 cut(s) 86, 125
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 1 cut(s) 28
FaiI YATR 6 cut(s) 26, 41, 114, 292, 300, 302
FatI CATG 1 cut(s) 24
FokI GGATG 2 cut(s) 26, 216
FspBI CTAG 2 cut(s) 168, 251
Hin1II CATG 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 101
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 28
Kzo9I GATC 1 cut(s) 73
LpnPI CCDG 2 cut(s) 249, 276
LweI GCATC 1 cut(s) 4
MaeI CTAG 2 cut(s) 168, 251
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 5 cut(s) 35, 53, 186, 278, 318
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 5 cut(s) 16, 58, 154, 224, 320
MluCI AATT 3 cut(s) 157, 180, 227
MnlI CCTC 2 cut(s) 73, 76
MseI TTAA 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 125
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 264
SetI ASST 4 cut(s) 66, 107, 127, 199
SfaNI GCATC 1 cut(s) 4
SgeI CNNG 7 cut(s) 37, 43, 89, 180, 263, 275, 276
SpeI ACTAGT 1 cut(s) 167
Sse9I AATT 3 cut(s) 157, 180, 227
SspMI CTAG 2 cut(s) 168, 251
StyD4I CCNGG 1 cut(s) 262
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 172
TasI AATT 3 cut(s) 157, 180, 227
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseFI GTSAC 1 cut(s) 186
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 3 cut(s) 17, 168, 327
TspGWI ACGGA 1 cut(s) 216
XapI RAATTY 1 cut(s) 157
XspI CTAG 2 cut(s) 168, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.