RLG00000019921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000269
Physical Location & Seq
Reverse (-)
58532944 .. 58533451
508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019921

Sequence Viewer

Length: 447 bp
ATGCCGCCAAAGGTCTACATAAAGAAGGCACCCAAAAGGGCGAAACTGAGCAGCTCTAGTAACTCTGATGGAGGTGCCCGAAAGAGTTCTCGAATGGTGGCCCCTAAACTGAGTAGCTCCACAACAATCTCCGATGGAGGCCCCCGAAATAGTACTCGAATCGCCGCCTCTAAAGCATCAGCTTCGGCGACGATCTTTGAGGTACCTAAACTGAAACCTACTTCCGATGAAGCGGTAGTTGAGGCATCGAAATCTACTTCCGATGAACTGGTGGTTGAGGCAGAGAAACCTCCTTCCGATGAGACGCGGTCACGAAAAGAGAAGGCACCAGAGGATTTAGAGTTGTCTACCTCACCTGTTAAAGCCAAAGAGGTGAAGGATCGAAAGAAACTCATCATGAAGAAGAAAGCCTCTGGTCGTTCCAAGAGCTTTTTGAACTACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

15.92

Weight (kDa)

10.03

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 202
AccB1I GGYRCC 4 cut(s) 28, 74, 202, 325
AccI GTMKAC 2 cut(s) 15, 347
AccII CGCG 1 cut(s) 307
AciI CCGC 4 cut(s) 5, 165, 233, 307
AclWI GGATC 1 cut(s) 387
AfaI GTAC 2 cut(s) 154, 204
AgsI TTSAA 1 cut(s) 436
AluBI AGCT 4 cut(s) 54, 117, 182, 429
AluI AGCT 4 cut(s) 54, 117, 182, 429
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 387
AoxI GGCC 2 cut(s) 99, 139
ApeKI GCWGC 1 cut(s) 51
Asp700I GAANNNNTTC 1 cut(s) 85
Asp718I GGTACC 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 100, 140
AsuHPI GGTGA 2 cut(s) 345, 385
BaeGI GKGCMC 1 cut(s) 79
BanI GGYRCC 4 cut(s) 28, 74, 202, 325
BbvI GCAGC 1 cut(s) 63
BccI CCATC 2 cut(s) 62, 128
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BcoDI GTCTC 1 cut(s) 296
BfaI CTAG 1 cut(s) 57
BisI GCNGC 3 cut(s) 5, 52, 165
BlsI GCNGC 3 cut(s) 6, 53, 166
BmcAI AGTACT 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 100, 140
BmiI GGNNCC 6 cut(s) 30, 76, 102, 142, 204, 327
BmsI GCATC 2 cut(s) 185, 254
Bse1I ACTGG 1 cut(s) 273
BseMII CTCAG 2 cut(s) 38, 101
BseNI ACTGG 1 cut(s) 273
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 2 cut(s) 101, 141
BshNI GGYRCC 4 cut(s) 28, 74, 202, 325
BsmAI GTCTC 1 cut(s) 296
BsmBI CGTCTC 1 cut(s) 296
BsnI GGCC 2 cut(s) 101, 141
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 192, 379
BspACI CCGC 4 cut(s) 5, 165, 233, 307
BspANI GGCC 2 cut(s) 101, 141
BspCNI CTCAG 2 cut(s) 39, 102
BspFNI CGCG 1 cut(s) 307
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 6 cut(s) 30, 76, 102, 142, 204, 327
BspPI GGATC 1 cut(s) 387
BspT107I GGYRCC 4 cut(s) 28, 74, 202, 325
BsrI ACTGG 1 cut(s) 273
BssMI GATC 2 cut(s) 192, 379
BstDEI CTNAG 2 cut(s) 47, 110
BstFNI CGCG 1 cut(s) 307
BstKTI GATC 2 cut(s) 195, 382
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 2 cut(s) 192, 379
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 63
BsuRI GGCC 2 cut(s) 101, 141
CciI TCATGA 1 cut(s) 396
Cfr13I GGNCC 2 cut(s) 100, 140
CseI GACGC 1 cut(s) 313
Csp6I GTAC 2 cut(s) 153, 203
CviAII CATG 1 cut(s) 397
CviJI RGCY 8 cut(s) 54, 101, 117, 141, 182, 365, 410, 429
CviKI_1 RGCY 8 cut(s) 54, 101, 117, 141, 182, 365, 410, 429
CviQI GTAC 2 cut(s) 153, 203
DdeI CTNAG 2 cut(s) 47, 110
DpnI GATC 2 cut(s) 194, 381
DpnII GATC 2 cut(s) 192, 379
EcoO109I RGGNCCY 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 296
FaeI CATG 1 cut(s) 400
FaiI YATR 2 cut(s) 20, 398
FatI CATG 1 cut(s) 396
FblI GTMKAC 2 cut(s) 15, 347
Fnu4HI GCNGC 3 cut(s) 5, 52, 165
Fsp4HI GCNGC 3 cut(s) 5, 52, 165
FspBI CTAG 1 cut(s) 57
GluI GCNGC 3 cut(s) 5, 52, 165
HaeIII GGCC 2 cut(s) 101, 141
HgaI GACGC 1 cut(s) 313
Hin1II CATG 1 cut(s) 400
HinfI GANTC 1 cut(s) 159
HphI GGTGA 2 cut(s) 345, 385
Hpy166II GTNNAC 2 cut(s) 16, 348
Hpy188I TCNGA 5 cut(s) 67, 133, 226, 262, 298
Hpy188III TCNNGA 3 cut(s) 90, 312, 397
Hpy8I GTNNAC 2 cut(s) 16, 348
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 4 cut(s) 19, 303, 316, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 2 cut(s) 47, 110
Hsp92II CATG 1 cut(s) 400
KpnI GGTACC 1 cut(s) 206
Kzo9I GATC 2 cut(s) 192, 379
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 4 cut(s) 254, 342, 369, 399
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 2 cut(s) 185, 254
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 59, 309
MalI GATC 2 cut(s) 194, 381
MboI GATC 2 cut(s) 192, 379
MboII GAAGA 2 cut(s) 412, 415
MhlI GDGCHC 1 cut(s) 79
MroXI GAANNNNTTC 1 cut(s) 85
MseI TTAA 1 cut(s) 360
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 173
NdeII GATC 2 cut(s) 192, 379
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 6 cut(s) 30, 76, 102, 142, 204, 327
NmuCI GTSAC 1 cut(s) 309
PagI TCATGA 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 159
PflFI GACNNNGTC 1 cut(s) 307
PkrI GCNGC 3 cut(s) 6, 53, 166
PspN4I GGNNCC 6 cut(s) 30, 76, 102, 142, 204, 327
PspPI GGNCC 2 cut(s) 100, 140
PsyI GACNNNGTC 1 cut(s) 307
RsaI GTAC 2 cut(s) 154, 204
RsaNI GTAC 2 cut(s) 153, 203
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 3 cut(s) 5, 52, 165
Sau3AI GATC 2 cut(s) 192, 379
Sau96I GGNCC 2 cut(s) 100, 140
ScaI AGTACT 1 cut(s) 154
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 2 cut(s) 185, 254
SsiI CCGC 4 cut(s) 5, 165, 233, 307
SspMI CTAG 1 cut(s) 57
TaqI TCGA 4 cut(s) 91, 157, 248, 382
TatI WGTACW 1 cut(s) 152
TauI GCSGC 2 cut(s) 7, 167
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TseFI GTSAC 1 cut(s) 309
TseI GCWGC 1 cut(s) 51
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 3 cut(s) 243, 279, 413
Tth111I GACNNNGTC 1 cut(s) 307
XmiI GTMKAC 2 cut(s) 15, 347
XmnI GAANNNNTTC 1 cut(s) 85
XspI CTAG 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.