Rh6AG139800

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000269
Physical Location & Seq
Reverse (-)
21543558 .. 21544142
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG139800.1

Sequence Viewer

Length: 411 bp
ATGAAAAGTTACAATGACAGAGACATGTGTGGAGATTCGGCTAGGGCAGTTTCGAAGGGTTTAGGTGTAAAGAGATTTGAGAATGGTATACCTGAGTGCGAGAAGATTTTCATACCAATACATGACATCAATCATTGGTACCTCCTTGTTGTGCGTCTTGATAATCAGACAGGAGAAGTGTGGGATAGCTTACAATGTAACAGGAGACGAATGAATCTGTGCAAAGCCGCTTTGCAAACACTGGACATTATATACCACCATGTGGAGTTCAAATTCAAGAATGTTGTGAAGAAGTTTGCTGACTTCCATGTATTCGAGCTGGCTCAATGCCCTAAACAAGAGGGCAGTTCTGACTGTGGGGTGTATGTGATCAGACACATGCAGTGCTATGGATTTGAGTGGTGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

136

Amino Acids

16.04

Weight (kDa)

7.63

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 29 - 130 2.2e-16 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 262
AccI GTMKAC 1 cut(s) 88
AciI CCGC 1 cut(s) 228
AcsI RAATTY 1 cut(s) 272
AdeI CACNNNGTG 1 cut(s) 262
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 262
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 2 cut(s) 271, 277
AluBI AGCT 2 cut(s) 189, 319
AluI AGCT 2 cut(s) 189, 319
Alw26I GTCTC 2 cut(s) 15, 199
ApoI RAATTY 1 cut(s) 272
Asp700I GAANNNNTTC 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 138
AsuII TTCGAA 1 cut(s) 53
BanI GGYRCC 1 cut(s) 138
BclI TGATCA 1 cut(s) 369
BcoDI GTCTC 2 cut(s) 15, 199
BfaI CTAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 53
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 246
BshNI GGYRCC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 262
BsmAI GTCTC 2 cut(s) 15, 199
BsmBI CGTCTC 1 cut(s) 199
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 369
BspACI CCGC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 246
BssMI GATC 1 cut(s) 369
BssNAI GTATAC 1 cut(s) 89
Bst1107I GTATAC 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 356
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 93
BstKTI GATC 1 cut(s) 372
BstMAI GTCTC 2 cut(s) 15, 199
BstMBI GATC 1 cut(s) 369
BstNSI RCATGY 2 cut(s) 28, 382
BstZ17I GTATAC 1 cut(s) 89
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 2 cut(s) 239, 389
Cac8I GCNNGC 1 cut(s) 321
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 139
CviAII CATG 5 cut(s) 25, 122, 260, 308, 379
CviJI RGCY 5 cut(s) 41, 189, 227, 319, 323
CviKI_1 RGCY 5 cut(s) 41, 189, 227, 319, 323
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
DraIII CACNNNGTG 1 cut(s) 262
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 5 cut(s) 28, 125, 263, 311, 382
FatI CATG 5 cut(s) 24, 121, 259, 307, 378
FbaI TGATCA 1 cut(s) 369
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 1 cut(s) 42
GluI GCNGC 1 cut(s) 228
HgaI GACGC 1 cut(s) 143
Hin1II CATG 5 cut(s) 28, 125, 263, 311, 382
HinfI GANTC 2 cut(s) 35, 214
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 3 cut(s) 168, 352, 374
Hpy188III TCNNGA 2 cut(s) 158, 277
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 3 cut(s) 222, 235, 382
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 5 cut(s) 28, 125, 263, 311, 382
KpnI GGTACC 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 1 cut(s) 369
LpnPI CCDG 5 cut(s) 105, 156, 187, 227, 305
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 2 cut(s) 8, 197
MalI GATC 1 cut(s) 371
MboI GATC 1 cut(s) 369
MboII GAAGA 2 cut(s) 115, 301
MluCI AATT 1 cut(s) 272
MnlI CCTC 2 cut(s) 152, 334
MroXI GAANNNNTTC 1 cut(s) 107
NdeII GATC 1 cut(s) 369
NlaIII CATG 5 cut(s) 28, 125, 263, 311, 382
NlaIV GGNNCC 1 cut(s) 140
NspI RCATGY 2 cut(s) 28, 382
NspV TTCGAA 1 cut(s) 53
PciI ACATGT 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 35, 214
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 1 cut(s) 229
PscI ACATGT 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 140
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 1 cut(s) 369
SetI ASST 5 cut(s) 67, 94, 144, 191, 321
SfuI TTCGAA 1 cut(s) 53
Sse9I AATT 1 cut(s) 272
SsiI CCGC 1 cut(s) 228
SspMI CTAG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 2 cut(s) 53, 315
TasI AATT 1 cut(s) 272
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 2 cut(s) 35, 214
TscAI CASTG 2 cut(s) 246, 389
TspDTI ATGAA 3 cut(s) 17, 100, 227
TspRI CASTG 2 cut(s) 246, 389
Van91I CCANNNNNTGG 1 cut(s) 262
XapI RAATTY 1 cut(s) 272
XceI RCATGY 2 cut(s) 28, 382
XmiI GTMKAC 1 cut(s) 88
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.