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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 439 |
| Acc36I | ACCTGC | 1 cut(s) | 439 |
| Acc65I | GGTACC | 2 cut(s) | 277, 2106 |
| AccB1I | GGYRCC | 7 cut(s) | 28, 74, 257, 277, 319, 400, 2106 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1361 |
| AccI | GTMKAC | 2 cut(s) | 15, 948 |
| AccII | CGCG | 1 cut(s) | 382 |
| AclWI | GGATC | 2 cut(s) | 2257, 2351 |
| AcoI | YGGCCR | 1 cut(s) | 2366 |
| AcsI | RAATTY | 4 cut(s) | 214, 807, 1864, 2321 |
| AcuI | CTGAAG | 4 cut(s) | 627, 700, 1190, 1854 |
| AdeI | CACNNNGTG | 1 cut(s) | 1361 |
| AfaI | GTAC | 7 cut(s) | 154, 279, 862, 1352, 1623, 2108, 2286 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1008, 1361, 2429 |
| AflIII | ACRYGT | 3 cut(s) | 1992, 2457, 2470 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1261 |
| AjiI | CACGTC | 1 cut(s) | 1039 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| Alw21I | GWGCWC | 2 cut(s) | 1115, 1809 |
| Alw26I | GTCTC | 5 cut(s) | 199, 208, 1838, 1983, 2167 |
| AlwI | GGATC | 2 cut(s) | 2257, 2351 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 659 |
| AoxI | GGCC | 6 cut(s) | 99, 139, 1164, 1233, 1425, 2366 |
| ApeKI | GCWGC | 6 cut(s) | 51, 114, 755, 1159, 1469, 2417 |
| ApoI | RAATTY | 4 cut(s) | 214, 807, 1864, 2321 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1380, 2027, 2075, 2321 |
| Asp718I | GGTACC | 2 cut(s) | 277, 2106 |
| AspLEI | GCGC | 1 cut(s) | 1089 |
| AspS9I | GGNCC | 5 cut(s) | 100, 140, 939, 1165, 2433 |
| AsuHPI | GGTGA | 5 cut(s) | 420, 460, 803, 965, 1453 |
| AsuII | TTCGAA | 2 cut(s) | 91, 2021 |
| AvaII | GGWCC | 2 cut(s) | 939, 2433 |
| BaeGI | GKGCMC | 1 cut(s) | 79 |
| BanI | GGYRCC | 7 cut(s) | 28, 74, 257, 277, 319, 400, 2106 |
| BbsI | GAAGAC | 3 cut(s) | 1334, 1638, 1658 |
| Bbv12I | GWGCWC | 2 cut(s) | 1115, 1809 |
| BbvI | GCAGC | 6 cut(s) | 63, 126, 767, 1146, 1456, 2429 |
| BceAI | ACGGC | 1 cut(s) | 271 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 165, 199 |
| BciVI | GTATCC | 1 cut(s) | 1051 |
| BclI | TGATCA | 2 cut(s) | 970, 2226 |
| BcoDI | GTCTC | 5 cut(s) | 199, 208, 1838, 1983, 2167 |
| BfaI | CTAG | 2 cut(s) | 1370, 1913 |
| BfmI | CTRYAG | 2 cut(s) | 432, 1686 |
| BfoI | RGCGCY | 1 cut(s) | 1090 |
| BfuAI | ACCTGC | 1 cut(s) | 439 |
| BfuI | GTATCC | 1 cut(s) | 1051 |
| BlpI | GCTNAGC | 1 cut(s) | 1609 |
| BmcAI | AGTACT | 1 cut(s) | 154 |
| Bme18I | GGWCC | 2 cut(s) | 939, 2433 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1261 |
| BmgBI | CACGTC | 1 cut(s) | 1039 |
| BmgT120I | GGNCC | 5 cut(s) | 100, 140, 939, 1165, 2433 |
| BmrI | ACTGGG | 2 cut(s) | 1210, 1255 |
| BmsI | GCATC | 4 cut(s) | 185, 886, 1711, 2272 |
| BmuI | ACTGGG | 2 cut(s) | 1210, 1255 |
| BpiI | GAAGAC | 3 cut(s) | 1334, 1638, 1658 |
| BpmI | CTGGAG | 2 cut(s) | 40, 690 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1121, 1808 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1609 |
| Bpu14I | TTCGAA | 2 cut(s) | 91, 2021 |
| BpuEI | CTTGAG | 2 cut(s) | 695, 1564 |
| Bsa29I | ATCGAT | 2 cut(s) | 637, 2346 |
| BsaI | GGTCTC | 3 cut(s) | 199, 208, 1838 |
| BsaJI | CCNNGG | 1 cut(s) | 942 |
| BsaWI | WCCGGW | 1 cut(s) | 488 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1008, 1361, 2429 |
| Bse1I | ACTGG | 3 cut(s) | 57, 1205, 1261 |
| BseCI | ATCGAT | 2 cut(s) | 637, 2346 |
| BseDI | CCNNGG | 1 cut(s) | 942 |
| BseGI | GGATG | 2 cut(s) | 901, 1116 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1008, 1361, 2429 |
| BseMII | CTCAG | 8 cut(s) | 189, 651, 969, 1499, 1822, 2052, 2244, 2289 |
| BseNI | ACTGG | 3 cut(s) | 57, 1205, 1261 |
| BseRI | GAGGAG | 1 cut(s) | 1802 |
| BseSI | GKGCMC | 1 cut(s) | 79 |
| BseXI | GCAGC | 6 cut(s) | 63, 126, 767, 1146, 1456, 2429 |
| BseYI | CCCAGC | 1 cut(s) | 935 |
| BsgI | GTGCAG | 2 cut(s) | 1061, 1551 |
| Bsh1236I | CGCG | 1 cut(s) | 382 |
| Bsh1285I | CGRYCG | 3 cut(s) | 386, 493, 1405 |
| BshFI | GGCC | 6 cut(s) | 101, 141, 1166, 1235, 1427, 2368 |
| BshNI | GGYRCC | 7 cut(s) | 28, 74, 257, 277, 319, 400, 2106 |
| BshVI | ATCGAT | 2 cut(s) | 637, 2346 |
| BsiEI | CGRYCG | 3 cut(s) | 386, 493, 1405 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1115, 1809 |
| BsiSI | CCGG | 1 cut(s) | 489 |
| BslFI | GGGAC | 3 cut(s) | 1049, 1249, 2446 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1008, 1361, 2429 |
| BsmAI | GTCTC | 5 cut(s) | 199, 208, 1838, 1983, 2167 |
| BsmBI | CGTCTC | 1 cut(s) | 2167 |
| BsmFI | GGGAC | 3 cut(s) | 1049, 1249, 2446 |
| BsmI | GAATGC | 1 cut(s) | 937 |
| BsnI | GGCC | 6 cut(s) | 101, 141, 1166, 1235, 1427, 2368 |
| Bso31I | GGTCTC | 3 cut(s) | 199, 208, 1838 |
| Bsp119I | TTCGAA | 2 cut(s) | 91, 2021 |
| Bsp1286I | GDGCHC | 3 cut(s) | 79, 1115, 1809 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1609 |
| BspANI | GGCC | 6 cut(s) | 101, 141, 1166, 1235, 1427, 2368 |
| BspCNI | CTCAG | 8 cut(s) | 190, 652, 970, 1500, 1821, 2053, 2245, 2288 |
| BspDI | ATCGAT | 2 cut(s) | 637, 2346 |
| BspFNI | CGCG | 1 cut(s) | 382 |
| BspHI | TCATGA | 1 cut(s) | 471 |
| BspMAI | CTGCAG | 1 cut(s) | 436 |
| BspMI | ACCTGC | 1 cut(s) | 439 |
| BspPI | GGATC | 2 cut(s) | 2257, 2351 |
| BspT104I | TTCGAA | 2 cut(s) | 91, 2021 |
| BspT107I | GGYRCC | 7 cut(s) | 28, 74, 257, 277, 319, 400, 2106 |
| BspTNI | GGTCTC | 3 cut(s) | 199, 208, 1838 |
| BsrI | ACTGG | 3 cut(s) | 57, 1205, 1261 |
| BssECI | CCNNGG | 1 cut(s) | 942 |
| Bst4CI | ACNGT | 5 cut(s) | 193, 621, 1299, 2213, 2437 |
| Bst6I | CTCTTC | 4 cut(s) | 603, 660, 1830, 2274 |
| BstBI | TTCGAA | 2 cut(s) | 91, 2021 |
| BstC8I | GCNNGC | 3 cut(s) | 729, 1164, 2200 |
| BstF5I | GGATG | 2 cut(s) | 901, 1116 |
| BstFNI | CGCG | 1 cut(s) | 382 |
| BstH2I | RGCGCY | 1 cut(s) | 1090 |
| BstHHI | GCGC | 1 cut(s) | 1089 |
| BstMAI | GTCTC | 5 cut(s) | 199, 208, 1838, 1983, 2167 |
| BstMCI | CGRYCG | 3 cut(s) | 386, 493, 1405 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 173, 242, 431, 764, 1188, 1926 |
| BstNSI | RCATGY | 5 cut(s) | 830, 861, 1996, 2239, 2461 |
| BstSFI | CTRYAG | 2 cut(s) | 432, 1686 |
| BstSLI | GKGCMC | 1 cut(s) | 79 |
| BstUI | CGCG | 1 cut(s) | 382 |
| BstV1I | GCAGC | 6 cut(s) | 63, 126, 767, 1146, 1456, 2429 |
| BstV2I | GAAGAC | 3 cut(s) | 1334, 1638, 1658 |
| BstX2I | RGATCY | 1 cut(s) | 2249 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1155, 2308 |
| BstYI | RGATCY | 1 cut(s) | 2249 |
| Bsu15I | ATCGAT | 2 cut(s) | 637, 2346 |
| BsuI | GTATCC | 1 cut(s) | 1051 |
| BsuRI | GGCC | 6 cut(s) | 101, 141, 1166, 1235, 1427, 2368 |
| BsuTUI | ATCGAT | 2 cut(s) | 637, 2346 |
| BtgZI | GCGATG | 1 cut(s) | 756 |
| BtrI | CACGTC | 1 cut(s) | 1039 |
| BtsCI | GGATG | 2 cut(s) | 901, 1116 |
| BtsI | GCAGTG | 1 cut(s) | 2246 |
| BtsIMutI | CAGTG | 3 cut(s) | 1136, 1697, 2246 |
| BveI | ACCTGC | 1 cut(s) | 439 |
| Cac8I | GCNNGC | 3 cut(s) | 729, 1164, 2200 |
| CaiI | CAGNNNCTG | 1 cut(s) | 659 |
| CciI | TCATGA | 1 cut(s) | 471 |
| CfoI | GCGC | 1 cut(s) | 1089 |
| Cfr13I | GGNCC | 5 cut(s) | 100, 140, 939, 1165, 2433 |
| ClaI | ATCGAT | 2 cut(s) | 637, 2346 |
| CseI | GACGC | 2 cut(s) | 1926, 2111 |
| Csp6I | GTAC | 7 cut(s) | 153, 278, 861, 1351, 1622, 2107, 2285 |
| CviQI | GTAC | 7 cut(s) | 153, 278, 861, 1351, 1622, 2107, 2285 |
| DraI | TTTAAA | 2 cut(s) | 955, 1197 |
| DraIII | CACNNNGTG | 1 cut(s) | 1361 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1261 |
| EaeI | YGGCCR | 1 cut(s) | 2366 |
| Eam1104I | CTCTTC | 4 cut(s) | 603, 660, 1830, 2274 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1261 |
| EarI | CTCTTC | 4 cut(s) | 603, 660, 1830, 2274 |
| EciI | GGCGGA | 1 cut(s) | 371 |
| Eco31I | GGTCTC | 3 cut(s) | 199, 208, 1838 |
| Eco32I | GATATC | 1 cut(s) | 579 |
| Eco47I | GGWCC | 2 cut(s) | 939, 2433 |
| Eco57I | CTGAAG | 4 cut(s) | 627, 700, 1190, 1854 |
| EcoO109I | RGGNCCY | 1 cut(s) | 140 |
| EcoRV | GATATC | 1 cut(s) | 579 |
| EcoT22I | ATGCAT | 2 cut(s) | 859, 2091 |
| Esp3I | CGTCTC | 1 cut(s) | 2167 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 657, 689, 1643, 1675 |
| FaqI | GGGAC | 3 cut(s) | 1049, 1249, 2446 |
| FauNDI | CATATG | 1 cut(s) | 1435 |
| FbaI | TGATCA | 2 cut(s) | 970, 2226 |
| FblI | GTMKAC | 2 cut(s) | 15, 948 |
| FokI | GGATG | 2 cut(s) | 908, 1103 |
| FspBI | CTAG | 2 cut(s) | 1370, 1913 |
| GlaI | GCGC | 1 cut(s) | 1088 |
| GsaI | CCCAGC | 1 cut(s) | 939 |
| GsuI | CTGGAG | 2 cut(s) | 40, 690 |
| HaeII | RGCGCY | 1 cut(s) | 1090 |
| HaeIII | GGCC | 6 cut(s) | 101, 141, 1166, 1235, 1427, 2368 |
| HapII | CCGG | 1 cut(s) | 489 |
| HgaI | GACGC | 2 cut(s) | 1926, 2111 |
| HhaI | GCGC | 1 cut(s) | 1089 |
| Hin6I | GCGC | 1 cut(s) | 1087 |
| HinP1I | GCGC | 1 cut(s) | 1087 |
| HincII | GTYRAC | 3 cut(s) | 253, 949, 1072 |
| HindII | GTYRAC | 3 cut(s) | 253, 949, 1072 |
| HindIII | AAGCTT | 1 cut(s) | 243 |
| HinfI | GANTC | 6 cut(s) | 230, 839, 1256, 1676, 2003, 2182 |
| HpaI | GTTAAC | 1 cut(s) | 253 |
| HpaII | CCGG | 1 cut(s) | 489 |
| HphI | GGTGA | 5 cut(s) | 420, 460, 803, 965, 1453 |
| Hpy188III | TCNNGA | 6 cut(s) | 472, 707, 798, 1543, 1784, 2126 |
| Hpy99I | CGWCG | 1 cut(s) | 193 |
| HpyCH4III | ACNGT | 5 cut(s) | 193, 621, 1299, 2213, 2437 |
| HpyCH4IV | ACGT | 2 cut(s) | 1038, 2470 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 173, 242, 431, 764, 1188, 1926 |
| HpySE526I | ACGT | 2 cut(s) | 1038, 2470 |
| HspAI | GCGC | 1 cut(s) | 1087 |
| KpnI | GGTACC | 2 cut(s) | 281, 2110 |
| Ksp22I | TGATCA | 2 cut(s) | 970, 2226 |
| KspAI | GTTAAC | 1 cut(s) | 253 |
| LmnI | GCTCC | 2 cut(s) | 59, 122 |
| Lsp1109I | GCAGC | 6 cut(s) | 63, 126, 767, 1146, 1456, 2429 |
| LweI | GCATC | 4 cut(s) | 185, 886, 1711, 2272 |
| MaeI | CTAG | 2 cut(s) | 1370, 1913 |
| MaeII | ACGT | 2 cut(s) | 1038, 2470 |
| MaeIII | GTNAC | 9 cut(s) | 59, 628, 902, 1742, 1760, 1898, 1940, 1976, 2165 |
| MfeI | CAATTG | 1 cut(s) | 768 |
| MflI | RGATCY | 1 cut(s) | 2249 |
| MhlI | GDGCHC | 3 cut(s) | 79, 1115, 1809 |
| MlyI | GAGTC | 4 cut(s) | 239, 833, 1250, 1670 |
| MmeI | TCCRAC | 2 cut(s) | 1467, 2508 |
| Mph1103I | ATGCAT | 2 cut(s) | 859, 2091 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1380, 2027, 2075, 2321 |
| MseI | TTAA | 7 cut(s) | 252, 954, 1031, 1196, 1446, 2271, 2297 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1219, 2084, 2377 |
| MspA1I | CMGCKG | 3 cut(s) | 605, 1832, 2198 |
| MspI | CCGG | 1 cut(s) | 489 |
| MunI | CAATTG | 1 cut(s) | 768 |
| Mva1269I | GAATGC | 1 cut(s) | 937 |
| MvnI | CGCG | 1 cut(s) | 382 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 173, 242, 431, 764, 1188, 1926 |
| NdeI | CATATG | 1 cut(s) | 1435 |
| NmeAIII | GCCGAG | 1 cut(s) | 2344 |
| NmuCI | GTSAC | 3 cut(s) | 628, 902, 1898 |
| NsiI | ATGCAT | 2 cut(s) | 859, 2091 |
| NspI | RCATGY | 5 cut(s) | 830, 861, 1996, 2239, 2461 |
| NspV | TTCGAA | 2 cut(s) | 91, 2021 |
| PagI | TCATGA | 1 cut(s) | 471 |
| PaqCI | CACCTGC | 1 cut(s) | 439 |
| PciI | ACATGT | 2 cut(s) | 1992, 2457 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 185 |
| PctI | GAATGC | 1 cut(s) | 937 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1380, 2027, 2075, 2321 |
| PfeI | GAWTC | 2 cut(s) | 2003, 2182 |
| PflFI | GACNNNGTC | 1 cut(s) | 1538 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1361 |
| Ple19I | CGATCG | 1 cut(s) | 1405 |
| PleI | GAGTC | 4 cut(s) | 238, 833, 1250, 1670 |
| PpsI | GAGTC | 4 cut(s) | 238, 833, 1250, 1670 |
| PscI | ACATGT | 2 cut(s) | 1992, 2457 |
| PspFI | CCCAGC | 1 cut(s) | 935 |
| PspPI | GGNCC | 5 cut(s) | 100, 140, 939, 1165, 2433 |
| PstI | CTGCAG | 1 cut(s) | 436 |
| PstNI | CAGNNNCTG | 1 cut(s) | 659 |
| PsuI | RGATCY | 1 cut(s) | 2249 |
| PsyI | GACNNNGTC | 1 cut(s) | 1538 |
| PvuI | CGATCG | 1 cut(s) | 1405 |
| PvuII | CAGCTG | 2 cut(s) | 605, 1832 |
| RsaI | GTAC | 7 cut(s) | 154, 279, 862, 1352, 1623, 2108, 2286 |
| RsaNI | GTAC | 7 cut(s) | 153, 278, 861, 1351, 1622, 2107, 2285 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1219, 2084, 2377 |
| SalI | GTCGAC | 1 cut(s) | 947 |
| SaqAI | TTAA | 7 cut(s) | 252, 954, 1031, 1196, 1446, 2271, 2297 |
| Sau96I | GGNCC | 5 cut(s) | 100, 140, 939, 1165, 2433 |
| ScaI | AGTACT | 1 cut(s) | 154 |
| SchI | GAGTC | 4 cut(s) | 239, 833, 1250, 1670 |
| SduI | GDGCHC | 3 cut(s) | 79, 1115, 1809 |
| SfaNI | GCATC | 4 cut(s) | 185, 886, 1711, 2272 |
| SfcI | CTRYAG | 2 cut(s) | 432, 1686 |
| SfuI | TTCGAA | 2 cut(s) | 91, 2021 |
| SinI | GGWCC | 2 cut(s) | 939, 2433 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1219, 2084, 2377 |
| SmlI | CTYRAG | 2 cut(s) | 674, 1543 |
| SmoI | CTYRAG | 2 cut(s) | 674, 1543 |
| SspMI | CTAG | 2 cut(s) | 1370, 1913 |
| TaaI | ACNGT | 5 cut(s) | 193, 621, 1299, 2213, 2437 |
| TaiI | ACGT | 2 cut(s) | 1041, 2473 |
| TaqI | TCGA | 9 cut(s) | 91, 157, 336, 457, 568, 637, 948, 2021, 2346 |
| TatI | WGTACW | 3 cut(s) | 152, 860, 1621 |
| TauI | GCSGC | 4 cut(s) | 7, 101, 167, 2198 |
| TfiI | GAWTC | 2 cut(s) | 2003, 2182 |
| Tru1I | TTAA | 7 cut(s) | 252, 954, 1031, 1196, 1446, 2271, 2297 |
| Tru9I | TTAA | 7 cut(s) | 252, 954, 1031, 1196, 1446, 2271, 2297 |
| TscAI | CASTG | 3 cut(s) | 1143, 1704, 2246 |
| TseFI | GTSAC | 3 cut(s) | 628, 902, 1898 |
| TseI | GCWGC | 6 cut(s) | 51, 114, 755, 1159, 1469, 2417 |
| Tsp45I | GTSAC | 3 cut(s) | 628, 902, 1898 |
| TspDTI | ATGAA | 8 cut(s) | 354, 488, 1389, 1724, 1985, 2068, 2195, 2364 |
| TspGWI | ACGGA | 2 cut(s) | 832, 891 |
| TspRI | CASTG | 3 cut(s) | 1143, 1704, 2246 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1538 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1361 |
| VpaK11BI | GGWCC | 2 cut(s) | 939, 2433 |
| XapI | RAATTY | 4 cut(s) | 214, 807, 1864, 2321 |
| XceI | RCATGY | 5 cut(s) | 830, 861, 1996, 2239, 2461 |
| XmiI | GTMKAC | 2 cut(s) | 15, 948 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1380, 2027, 2075, 2321 |
| XspI | CTAG | 2 cut(s) | 1370, 1913 |
| ZrmI | AGTACT | 1 cut(s) | 154 |
| Zsp2I | ATGCAT | 2 cut(s) | 859, 2091 |