Rh7CG225400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000269
Physical Location & Seq
Forward (+)
20901601 .. 20902186
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG225400.1

Sequence Viewer

Length: 414 bp
ATGAAGAAGAAAGCCTTCGGTCGTTCCATGAGCTTTTTAAACTACCTGAACATTCAACACAAACAAATCAATCCCCCAAAACTAAACCATGATTTTCGAGTTGAGATATCTCAAAAATGGAAAGAGCTTCCAGCTGAAGAGAAGGAACAGTATGTAGTGACTGATCGATGTGGTCAGTCATCAGTTTCTGAGGAAGAGTTGCTTGAGTTGGTTCGGATTGATACCCGTTGCTCTCCAGACCGCTTCAGGTCTTTGGTTGCAGACTTTAGCGATGAGAAAAAGGCAGCCTGTTCAGCAATTGGATTTGATGTGTTGTTGAAGATGTCAGGAAGGAAAATTCACCACTCTATGTTGCGTGTCCTTGTGGACTCCGTAGACCCCAATGCATGTACTATAACTATGCACGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

137

Amino Acids

15.78

Weight (kDa)

6.96

Isoelectric Point (pI)

65.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 375
AciI CCGC 1 cut(s) 241
AcsI RAATTY 1 cut(s) 336
AcuI CTGAAG 2 cut(s) 156, 229
AfaI GTAC 1 cut(s) 391
AgsI TTSAA 2 cut(s) 56, 319
AluBI AGCT 3 cut(s) 33, 127, 134
AluI AGCT 3 cut(s) 33, 127, 134
AlwNI CAGNNNCTG 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 336
Asp700I GAANNNNTTC 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 332
BbvI GCAGC 1 cut(s) 296
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
BpmI CTGGAG 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 224
Bsa29I ATCGAT 1 cut(s) 166
BseCI ATCGAT 1 cut(s) 166
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 22
BshVI ATCGAT 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 22
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 181
BspDI ATCGAT 1 cut(s) 166
BssMI GATC 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 150
Bst6I CTCTTC 2 cut(s) 132, 189
BstDEI CTNAG 1 cut(s) 189
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNSI RCATGY 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 296
Bsu15I ATCGAT 1 cut(s) 166
BsuTUI ATCGAT 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 285
CaiI CAGNNNCTG 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 166
Csp6I GTAC 1 cut(s) 390
CviAII CATG 3 cut(s) 28, 89, 387
CviJI RGCY 5 cut(s) 14, 33, 127, 134, 287
CviKI_1 RGCY 5 cut(s) 14, 33, 127, 134, 287
CviQI GTAC 1 cut(s) 390
DdeI CTNAG 1 cut(s) 189
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DraI TTTAAA 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 132, 189
EarI CTCTTC 2 cut(s) 132, 189
Eco32I GATATC 1 cut(s) 108
Eco57I CTGAAG 2 cut(s) 156, 229
EcoRV GATATC 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 388
FaeI CATG 3 cut(s) 31, 92, 390
FaiI YATR 7 cut(s) 29, 90, 153, 350, 388, 395, 401
FalI AAGNNNNNCTT 3 cut(s) 31, 186, 218
FatI CATG 3 cut(s) 27, 88, 386
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 285
GsuI CTGGAG 1 cut(s) 219
Hin1II CATG 3 cut(s) 31, 92, 390
HinfI GANTC 1 cut(s) 368
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 367, 376
Hpy188I TCNGA 2 cut(s) 190, 216
Hpy188III TCNNGA 2 cut(s) 236, 327
Hpy8I GTNNAC 2 cut(s) 367, 376
HpyAV CCTTC 3 cut(s) 25, 136, 324
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 260, 386, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 3 cut(s) 31, 92, 390
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 6 cut(s) 59, 144, 232, 249, 301, 312
Lsp1109I GCAGC 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 5 cut(s) 16, 19, 149, 206, 331
MfeI CAATTG 1 cut(s) 297
MluCI AATT 2 cut(s) 297, 336
MlyI GAGTC 1 cut(s) 362
MnlI CCTC 1 cut(s) 184
Mph1103I ATGCAT 1 cut(s) 388
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 134
MunI CAATTG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 1 cut(s) 163
NlaIII CATG 3 cut(s) 31, 92, 390
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PstNI CAGNNNCTG 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 1 cut(s) 391
RsaNI GTAC 1 cut(s) 390
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 1 cut(s) 163
SchI GAGTC 1 cut(s) 362
SetI ASST 5 cut(s) 35, 48, 129, 136, 251
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 297, 336
SsiI CCGC 1 cut(s) 241
TaaI ACNGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 97, 166
TaqII GACCGA 1 cut(s) 8
TasI AATT 2 cut(s) 297, 336
TatI WGTACW 1 cut(s) 389
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 361
XapI RAATTY 1 cut(s) 336
XceI RCATGY 1 cut(s) 390
XmiI GTMKAC 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.