RLG00000009211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000269
Physical Location & Seq
Forward (+)
48870547 .. 48872114
1568 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009211

Sequence Viewer

Length: 969 bp
ATGCTGCCAAAGGTCTACACAAAGAAGGCACCCAAAAGGGCGAAACCGAGTAGCTCTAGTAACTCTGATGGAGCGGTAATTGAGGCACCGAAACCTATTTTCGATGAACTGGTGGTTGAGGAGGAGAAACCTCCTTCCAATGATATGCGATCACGAAAAGAGAAGGCACCAGAGGATTTAGAGCTGTCTGCCTCACTTGTCGAAGCCAAAGAGGTGAAGGATCGAAAGAAGCTCATCATGAAGAAGAAAGCCTCCGGTCGTTCCATAAGCTTTTTGAACTACTGGACTTTGGTTGCAGATTTTAGCGATGAGAAAAAGGCAGCCTGTTCAGCAATTGGATTTGATGTGTTGTTGAAGATGTCAGGAAGGAAAATTCACCACTCTATGCTGCGTGTCCTTGTGGACTCCGTAGACCCCAATGTATGTACTATAACTATGCACGGAAAAGAGATTGAAATGGATGCAAGTGACTTTGAAAATGTGATGGGGTTGAAGAATGTTGGGTCCAAGGTCGACTTTAAAGGTTCCACTAATGATCACACTGAGTTGATGGCGATAATAAACTCCTTGCATGGGAAGGATAGGAAGATTAGTTTAAAGGACGTGCAGAACTACTTGAAGGATACAGAAGAAGTTGACAACAAGTTCAAGCGCTTGTTTGTGCTGTTCACAATGAGCACCATCCTTAGCCCATCTGCCTCACTGACGATACCAAAGAAGTGGCTGCTGGCCCTGAAGGACACTCGCCTGATTAGCTCTTTAAACTGGGCTGATTACTCATTCAAATGTTTGATGGAGGCCATCGTCAGTTTCAAAAAAGACTCTCAGTCCTATTGTAGCTATTGTGTCCTGTTTCTGCAACCGTTCTATTTTGATTGTGTTTCACATAGGAAGACCATTGTGGACAAGTCCTTCTACCCAGTTGAAGCTTGGGGGACCATGAAACGGGCAAACTGCTCAAATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

323

Amino Acids

36.37

Weight (kDa)

9.02

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1985 PF09331 143 - 266 8.5e-07 Domain of unknown function (DUF1985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 28, 85, 166
AccBSI CCGCTC 1 cut(s) 74
AccI GTMKAC 3 cut(s) 15, 411, 513
AciI CCGC 1 cut(s) 74
AclWI GGATC 1 cut(s) 228
AcsI RAATTY 1 cut(s) 372
AcuI CTGAAG 1 cut(s) 755
AfaI GTAC 1 cut(s) 427
AfeI AGCGCT 1 cut(s) 653
AfiI CCNNNNNNNGG 2 cut(s) 573, 945
AhdI GACNNNNNGTC 1 cut(s) 826
AjiI CACGTC 1 cut(s) 604
AluBI AGCT 7 cut(s) 54, 184, 232, 270, 756, 840, 929
AluI AGCT 7 cut(s) 54, 184, 232, 270, 756, 840, 929
Alw21I GWGCWC 1 cut(s) 680
AlwI GGATC 1 cut(s) 228
Aor51HI AGCGCT 1 cut(s) 653
AoxI GGCC 2 cut(s) 729, 798
ApeKI GCWGC 4 cut(s) 4, 320, 388, 724
ApoI RAATTY 1 cut(s) 372
AspLEI GCGC 1 cut(s) 654
AspS9I GGNCC 3 cut(s) 504, 730, 936
AsuHPI GGTGA 2 cut(s) 226, 368
AvaII GGWCC 2 cut(s) 504, 936
BanI GGYRCC 3 cut(s) 28, 85, 166
BbsI GAAGAC 1 cut(s) 899
Bbv12I GWGCWC 1 cut(s) 680
BbvI GCAGC 3 cut(s) 332, 375, 711
BccI CCATC 7 cut(s) 62, 478, 544, 689, 700, 787, 809
BciVI GTATCC 1 cut(s) 616
BclI TGATCA 1 cut(s) 535
BfaI CTAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 655
BfuI GTATCC 1 cut(s) 616
BisI GCNGC 4 cut(s) 5, 321, 389, 725
BlsI GCNGC 4 cut(s) 6, 322, 390, 726
Bme18I GGWCC 2 cut(s) 504, 936
BmeRI GACNNNNNGTC 1 cut(s) 826
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 3 cut(s) 504, 730, 936
BmiI GGNNCC 6 cut(s) 30, 87, 168, 505, 526, 937
BmrI ACTGGG 2 cut(s) 775, 914
BmsI GCATC 1 cut(s) 451
BmuI ACTGGG 2 cut(s) 775, 914
BpiI GAAGAC 1 cut(s) 899
Bpu10I CCTNAGC 1 cut(s) 686
BsaJI CCNNGG 1 cut(s) 507
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 2 cut(s) 573, 945
Bse1I ACTGG 4 cut(s) 114, 287, 770, 920
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 2 cut(s) 466, 681
BseLI CCNNNNNNNGG 2 cut(s) 573, 945
BseMII CTCAG 2 cut(s) 534, 839
BseNI ACTGG 4 cut(s) 114, 287, 770, 920
BseRI GAGGAG 2 cut(s) 134, 137
BseXI GCAGC 3 cut(s) 332, 375, 711
BsgI GTGCAG 1 cut(s) 626
Bsh1285I CGRYCG 1 cut(s) 259
BshFI GGCC 2 cut(s) 731, 800
BshNI GGYRCC 3 cut(s) 28, 85, 166
BsiEI CGRYCG 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 680
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 949
BslI CCNNNNNNNGG 2 cut(s) 573, 945
BsmFI GGGAC 1 cut(s) 949
BsnI GGCC 2 cut(s) 731, 800
Bsp1286I GDGCHC 1 cut(s) 680
Bsp143I GATC 3 cut(s) 149, 220, 535
BspACI CCGC 1 cut(s) 74
BspANI GGCC 2 cut(s) 731, 800
BspCNI CTCAG 2 cut(s) 535, 838
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 6 cut(s) 30, 87, 168, 505, 526, 937
BspPI GGATC 1 cut(s) 228
BspT107I GGYRCC 3 cut(s) 28, 85, 166
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 4 cut(s) 114, 287, 770, 920
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 3 cut(s) 149, 220, 535
BssT1I CCWWGG 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 864
BstC8I GCNNGC 1 cut(s) 729
BstDEI CTNAG 3 cut(s) 543, 686, 825
BstF5I GGATG 2 cut(s) 466, 681
BstH2I RGCGCY 1 cut(s) 655
BstHHI GCGC 1 cut(s) 654
BstKTI GATC 3 cut(s) 152, 223, 538
BstMBI GATC 3 cut(s) 149, 220, 535
BstMCI CGRYCG 1 cut(s) 259
BstMWI GCNNNNNNNGC 2 cut(s) 329, 753
BstV1I GCAGC 3 cut(s) 332, 375, 711
BstV2I GAAGAC 1 cut(s) 899
BstXI CCANNNNNNTGG 1 cut(s) 720
BsuI GTATCC 1 cut(s) 616
BsuRI GGCC 2 cut(s) 731, 800
BtgZI GCGATG 1 cut(s) 321
BtrI CACGTC 1 cut(s) 604
BtsCI GGATG 2 cut(s) 466, 681
BtsIMutI CAGTG 2 cut(s) 540, 701
Cac8I GCNNGC 1 cut(s) 729
CciI TCATGA 1 cut(s) 237
CfoI GCGC 1 cut(s) 654
Cfr13I GGNCC 3 cut(s) 504, 730, 936
Csp6I GTAC 1 cut(s) 426
CviAII CATG 3 cut(s) 238, 572, 940
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 3 cut(s) 543, 686, 825
DpnI GATC 3 cut(s) 151, 222, 537
DpnII GATC 3 cut(s) 149, 220, 535
DraI TTTAAA 3 cut(s) 520, 597, 762
DriI GACNNNNNGTC 1 cut(s) 826
Eam1105I GACNNNNNGTC 1 cut(s) 826
Eco130I CCWWGG 1 cut(s) 507
Eco47I GGWCC 2 cut(s) 504, 936
Eco47III AGCGCT 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 755
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 3 cut(s) 241, 575, 943
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FaqI GGGAC 1 cut(s) 949
FatI CATG 3 cut(s) 237, 571, 939
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 3 cut(s) 15, 411, 513
Fnu4HI GCNGC 4 cut(s) 5, 321, 389, 725
FokI GGATG 2 cut(s) 473, 668
Fsp4HI GCNGC 4 cut(s) 5, 321, 389, 725
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 653
GluI GCNGC 4 cut(s) 5, 321, 389, 725
HaeII RGCGCY 1 cut(s) 655
HaeIII GGCC 2 cut(s) 731, 800
HapII CCGG 1 cut(s) 255
HhaI GCGC 1 cut(s) 654
Hin1II CATG 3 cut(s) 241, 575, 943
Hin6I GCGC 1 cut(s) 652
HinP1I GCGC 1 cut(s) 652
HincII GTYRAC 2 cut(s) 514, 637
HindII GTYRAC 2 cut(s) 514, 637
HindIII AAGCTT 2 cut(s) 268, 927
HinfI GANTC 2 cut(s) 404, 821
HpaII CCGG 1 cut(s) 255
HphI GGTGA 2 cut(s) 226, 368
Hpy166II GTNNAC 7 cut(s) 16, 403, 412, 514, 637, 669, 904
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 3 cut(s) 153, 238, 363
Hpy8I GTNNAC 7 cut(s) 16, 403, 412, 514, 637, 669, 904
HpyAV CCTTC 9 cut(s) 19, 144, 157, 211, 360, 571, 613, 730, 922
HpyCH4III ACNGT 1 cut(s) 864
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 6 cut(s) 296, 439, 464, 571, 607, 859
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 753
HpyF3I CTNAG 3 cut(s) 543, 686, 825
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 3 cut(s) 241, 575, 943
HspAI GCGC 1 cut(s) 652
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 3 cut(s) 149, 220, 535
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 3 cut(s) 332, 375, 711
LweI GCATC 1 cut(s) 451
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 2 cut(s) 59, 467
MalI GATC 3 cut(s) 151, 222, 537
MbiI CCGCTC 1 cut(s) 74
MboI GATC 3 cut(s) 149, 220, 535
MboII GAAGA 7 cut(s) 253, 256, 367, 505, 598, 641, 904
MfeI CAATTG 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 680
MluCI AATT 3 cut(s) 78, 333, 372
MlyI GAGTC 2 cut(s) 398, 815
MseI TTAA 3 cut(s) 519, 596, 761
MslI CAYNNNNRTG 1 cut(s) 784
MspI CCGG 1 cut(s) 255
MunI CAATTG 1 cut(s) 333
MwoI GCNNNNNNNGC 2 cut(s) 329, 753
NdeII GATC 3 cut(s) 149, 220, 535
NlaIII CATG 3 cut(s) 241, 575, 943
NlaIV GGNNCC 6 cut(s) 30, 87, 168, 505, 526, 937
NmuCI GTSAC 1 cut(s) 467
PagI TCATGA 1 cut(s) 237
PkrI GCNGC 4 cut(s) 6, 322, 390, 726
PleI GAGTC 2 cut(s) 398, 815
PpsI GAGTC 2 cut(s) 398, 815
PspN4I GGNNCC 6 cut(s) 30, 87, 168, 505, 526, 937
PspPI GGNCC 3 cut(s) 504, 730, 936
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
RseI CAYNNNNRTG 1 cut(s) 784
SalI GTCGAC 1 cut(s) 512
SaqAI TTAA 3 cut(s) 519, 596, 761
SatI GCNGC 4 cut(s) 5, 321, 389, 725
Sau3AI GATC 3 cut(s) 149, 220, 535
Sau96I GGNCC 3 cut(s) 504, 730, 936
SchI GAGTC 2 cut(s) 398, 815
SduI GDGCHC 1 cut(s) 680
SfaNI GCATC 1 cut(s) 451
SinI GGWCC 2 cut(s) 504, 936
SmiMI CAYNNNNRTG 1 cut(s) 784
Sse9I AATT 3 cut(s) 78, 333, 372
SsiI CCGC 1 cut(s) 74
SspMI CTAG 1 cut(s) 57
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 1 cut(s) 864
TaiI ACGT 1 cut(s) 606
TaqI TCGA 4 cut(s) 102, 201, 223, 513
TasI AATT 3 cut(s) 78, 333, 372
TatI WGTACW 1 cut(s) 425
Tru1I TTAA 3 cut(s) 519, 596, 761
Tru9I TTAA 3 cut(s) 519, 596, 761
TscAI CASTG 2 cut(s) 547, 708
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 4 cut(s) 4, 320, 388, 724
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 3 cut(s) 120, 254, 956
TspGWI ACGGA 2 cut(s) 397, 456
TspRI CASTG 2 cut(s) 547, 708
VpaK11BI GGWCC 2 cut(s) 504, 936
XapI RAATTY 1 cut(s) 372
XcmI CCANNNNNNNNNTGG 1 cut(s) 927
XmiI GTMKAC 3 cut(s) 15, 411, 513
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.