Rh1DG057500

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000269
Physical Location & Seq
Forward (+)
9381528 .. 9382391
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG057500.1

Sequence Viewer

Length: 600 bp
ATGAAAAGTTACAATGACAAAGACATGTGTGGAGATTCGGCAAGGGCAGTTTCGAAGGGTTTGGGTGTAAAGAGATTTGAGAATGGCATACCTGAGTGCAAGAAGATTTTCATACCAATGCATGATATCAATCATTGGTACCTCCTTGTTATGCGTCTTGATAATCAGATAGGACAAGTGTGGGATAGATTACAATGTAACAAGAGAAAAATGAATCTGTGCAAAGCCGTTTTGCAAACACTGGACATTTTCTACCACCATGTGGAATTCAAAGTCAAGAATGTTGTGAAGAAGTTTGCTGACTTCCATGTATTCGAGTCGGCTCAATGCCCTAAACAAGAGGGCGGTTCTGACTGTGGGGTGTATGTGATCAAACACATGCAGTGTTATGGATCTGAGTGGTGGCATCAGTTTAACTCAGAAGAGGTACGTATGGACTTAACCATTGAATTGGTAAGGAACAAATTCAATGAGTGCTGGAAATGGATCGAGGAAGCCATCAAAACTCTGCCACCACCAATATGTTCTACACCTAAGACGGCACAAAGGGAAACTAAAGCAGCACCGAAGAAAGGGACCGTGAAGAACCCAATCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

199

Amino Acids

23.19

Weight (kDa)

9.0

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 29 - 140 2.7e-12 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 262
AciI CCGC 1 cut(s) 345
AclWI GGATC 2 cut(s) 400, 494
AcsI RAATTY 2 cut(s) 266, 464
AdeI CACNNNGTG 1 cut(s) 262
AfaI GTAC 2 cut(s) 140, 429
AfiI CCNNNNNNNGG 2 cut(s) 262, 572
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 271, 449, 469
AlwI GGATC 2 cut(s) 400, 494
ApeKI GCWGC 1 cut(s) 560
ApoI RAATTY 2 cut(s) 266, 464
Asp700I GAANNNNTTC 2 cut(s) 107, 464
Asp718I GGTACC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 576
AsuII TTCGAA 1 cut(s) 53
AvaII GGWCC 1 cut(s) 576
BanI GGYRCC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 572
BccI CCATC 1 cut(s) 506
BceAI ACGGC 2 cut(s) 212, 555
BclI TGATCA 1 cut(s) 369
BisI GCNGC 1 cut(s) 561
BlsI GCNGC 1 cut(s) 562
Bme18I GGWCC 1 cut(s) 576
BmgT120I GGNCC 1 cut(s) 576
BmiI GGNNCC 2 cut(s) 140, 577
BmsI GCATC 1 cut(s) 415
Bpu14I TTCGAA 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 572
Bse1I ACTGG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 262, 572
BseMII CTCAG 3 cut(s) 84, 387, 432
BseNI ACTGG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 572
BshNI GGYRCC 1 cut(s) 138
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 2 cut(s) 262, 572
BsmFI GGGAC 1 cut(s) 589
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 3 cut(s) 369, 392, 486
BspACI CCGC 1 cut(s) 345
BspCNI CTCAG 3 cut(s) 85, 388, 431
BspLI GGNNCC 2 cut(s) 140, 577
BspPI GGATC 2 cut(s) 400, 494
BspT104I TTCGAA 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 246
BssMI GATC 3 cut(s) 369, 392, 486
Bst4CI ACNGT 2 cut(s) 356, 580
Bst6I CTCTTC 1 cut(s) 417
BstBAI YACGTR 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 53
BstDEI CTNAG 4 cut(s) 93, 396, 418, 534
BstKTI GATC 3 cut(s) 372, 395, 489
BstMBI GATC 3 cut(s) 369, 392, 486
BstNSI RCATGY 2 cut(s) 28, 382
BstSNI TACGTA 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 572
BstX2I RGATCY 1 cut(s) 392
BstXI CCANNNNNNTGG 1 cut(s) 451
BstYI RGATCY 1 cut(s) 392
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 2 cut(s) 239, 389
Cfr13I GGNCC 1 cut(s) 576
CseI GACGC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 139, 428
CviAII CATG 5 cut(s) 25, 122, 260, 308, 379
CviJI RGCY 3 cut(s) 227, 323, 497
CviKI_1 RGCY 3 cut(s) 227, 323, 497
CviQI GTAC 2 cut(s) 139, 428
DdeI CTNAG 4 cut(s) 93, 396, 418, 534
DpnI GATC 3 cut(s) 371, 394, 488
DpnII GATC 3 cut(s) 369, 392, 486
DraIII CACNNNGTG 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco105I TACGTA 1 cut(s) 431
Eco32I GATATC 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 576
EcoRI GAATTC 1 cut(s) 266
EcoRV GATATC 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 123
FaeI CATG 5 cut(s) 28, 125, 263, 311, 382
FaqI GGGAC 1 cut(s) 589
FatI CATG 5 cut(s) 24, 121, 259, 307, 378
FbaI TGATCA 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 561
Fsp4HI GCNGC 1 cut(s) 561
GluI GCNGC 1 cut(s) 561
HgaI GACGC 1 cut(s) 143
Hin1II CATG 5 cut(s) 28, 125, 263, 311, 382
HinfI GANTC 3 cut(s) 35, 214, 317
Hpy188I TCNGA 4 cut(s) 168, 352, 397, 421
Hpy188III TCNNGA 2 cut(s) 158, 277
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 2 cut(s) 356, 580
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 5 cut(s) 99, 121, 222, 235, 382
HpyF3I CTNAG 4 cut(s) 93, 396, 418, 534
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 5 cut(s) 28, 125, 263, 311, 382
KpnI GGTACC 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 369
Kzo9I GATC 3 cut(s) 369, 392, 486
LpnPI CCDG 3 cut(s) 105, 227, 463
Lsp1109I GCAGC 1 cut(s) 572
LweI GCATC 1 cut(s) 415
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 2 cut(s) 8, 197
MalI GATC 3 cut(s) 371, 394, 488
MboI GATC 3 cut(s) 369, 392, 486
MboII GAAGA 5 cut(s) 115, 301, 434, 580, 595
MflI RGATCY 1 cut(s) 392
MluCI AATT 3 cut(s) 266, 449, 464
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 4 cut(s) 152, 334, 418, 484
Mph1103I ATGCAT 1 cut(s) 123
MroXI GAANNNNTTC 2 cut(s) 107, 464
MseI TTAA 2 cut(s) 414, 440
MslI CAYNNNNRTG 2 cut(s) 116, 520
NdeII GATC 3 cut(s) 369, 392, 486
NlaIII CATG 5 cut(s) 28, 125, 263, 311, 382
NlaIV GGNNCC 2 cut(s) 140, 577
NsiI ATGCAT 1 cut(s) 123
NspI RCATGY 2 cut(s) 28, 382
NspV TTCGAA 1 cut(s) 53
PciI ACATGT 1 cut(s) 24
PdmI GAANNNNTTC 2 cut(s) 107, 464
PfeI GAWTC 2 cut(s) 35, 214
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 1 cut(s) 562
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 431
PscI ACATGT 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 140, 577
PspPI GGNCC 1 cut(s) 576
PsuI RGATCY 1 cut(s) 392
RsaI GTAC 2 cut(s) 140, 429
RsaNI GTAC 2 cut(s) 139, 428
RseI CAYNNNNRTG 2 cut(s) 116, 520
SaqAI TTAA 2 cut(s) 414, 440
SatI GCNGC 1 cut(s) 561
Sau3AI GATC 3 cut(s) 369, 392, 486
Sau96I GGNCC 1 cut(s) 576
SchI GAGTC 1 cut(s) 326
SetI ASST 5 cut(s) 94, 144, 429, 433, 535
SfaNI GCATC 1 cut(s) 415
SfuI TTCGAA 1 cut(s) 53
SinI GGWCC 1 cut(s) 576
SmiMI CAYNNNNRTG 2 cut(s) 116, 520
SnaBI TACGTA 1 cut(s) 431
Sse9I AATT 3 cut(s) 266, 449, 464
SsiI CCGC 1 cut(s) 345
TaaI ACNGT 2 cut(s) 356, 580
TaiI ACGT 1 cut(s) 433
TaqI TCGA 3 cut(s) 53, 315, 489
TasI AATT 3 cut(s) 266, 449, 464
TfiI GAWTC 2 cut(s) 35, 214
Tru1I TTAA 2 cut(s) 414, 440
Tru9I TTAA 2 cut(s) 414, 440
TscAI CASTG 2 cut(s) 246, 389
TseI GCWGC 1 cut(s) 560
TspDTI ATGAA 3 cut(s) 17, 100, 227
TspRI CASTG 2 cut(s) 246, 389
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 576
XapI RAATTY 2 cut(s) 266, 464
XceI RCATGY 2 cut(s) 28, 382
XmnI GAANNNNTTC 2 cut(s) 107, 464
Zsp2I ATGCAT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.