Rh7CG225500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000269
Physical Location & Seq
Forward (+)
20902188 .. 20902466
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG225500.1

Sequence Viewer

Length: 279 bp
ATGGATGCAAGTGACTTTGAAAATGTGATGGGGTTGAAGAATGCTGGGTCCGAGGTCGACTTTAAAGGTTCCACTAATGATCACCCTGAGTTGATGGCGATAATAAACTCCTTGTGTGGGAAGGATAAGAAGATCAGTTTAAGGGACGTGCAGAACTACATGAAGGATACAGAAGAAGTTGACAACAAGTTCAAGCGCCTGTTTGTGTTGTTCACAATGAGCACCATCCTTAGCCCATCTGCCTCACTGACAATACCAAAGAAGTGGCTGCTGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

92

Amino Acids

10.36

Weight (kDa)

5.73

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 3 cut(s) 20, 37, 193
AjiI CACGTC 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 224
ApeKI GCWGC 2 cut(s) 268, 271
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 255, 258
BccI CCATC 4 cut(s) 22, 88, 233, 244
BciVI GTATCC 1 cut(s) 160
BclI TGATCA 1 cut(s) 79
BfoI RGCGCY 1 cut(s) 199
BfuI GTATCC 1 cut(s) 160
BisI GCNGC 2 cut(s) 269, 272
BlsI GCNGC 2 cut(s) 270, 273
Bme18I GGWCC 1 cut(s) 48
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 2 cut(s) 49, 70
Bpu10I CCTNAGC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 2 cut(s) 10, 225
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 255, 258
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 224
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 79, 132
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 49, 70
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 79, 132
BstDEI CTNAG 2 cut(s) 87, 230
BstF5I GGATG 2 cut(s) 10, 225
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 2 cut(s) 82, 135
BstMBI GATC 2 cut(s) 79, 132
BstV1I GCAGC 2 cut(s) 255, 258
BstXI CCANNNNNNTGG 1 cut(s) 264
BsuI GTATCC 1 cut(s) 160
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 10, 225
BtsIMutI CAGTG 1 cut(s) 245
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 48
CviAII CATG 1 cut(s) 160
CviJI RGCY 2 cut(s) 234, 268
CviKI_1 RGCY 2 cut(s) 234, 268
DdeI CTNAG 2 cut(s) 87, 230
DpnI GATC 2 cut(s) 81, 134
DpnII GATC 2 cut(s) 79, 132
DraI TTTAAA 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 48
FaeI CATG 1 cut(s) 163
FaiI YATR 1 cut(s) 161
FaqI GGGAC 1 cut(s) 158
FatI CATG 1 cut(s) 159
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 269, 272
FokI GGATG 2 cut(s) 17, 212
Fsp4HI GCNGC 2 cut(s) 269, 272
GlaI GCGC 1 cut(s) 197
GluI GCNGC 2 cut(s) 269, 272
GsaI CCCAGC 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 199
HhaI GCGC 1 cut(s) 198
Hin1II CATG 1 cut(s) 163
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 2 cut(s) 58, 181
HindII GTYRAC 2 cut(s) 58, 181
HphI GGTGA 1 cut(s) 74
Hpy166II GTNNAC 3 cut(s) 58, 181, 213
Hpy188I TCNGA 1 cut(s) 52
Hpy8I GTNNAC 3 cut(s) 58, 181, 213
HpyAV CCTTC 2 cut(s) 115, 157
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 2 cut(s) 8, 151
HpyF3I CTNAG 2 cut(s) 87, 230
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 1 cut(s) 163
HspAI GCGC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 2 cut(s) 79, 132
LpnPI CCDG 3 cut(s) 30, 99, 212
Lsp1109I GCAGC 2 cut(s) 255, 258
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 81, 134
MboI GATC 2 cut(s) 79, 132
MboII GAAGA 3 cut(s) 49, 142, 185
MhlI GDGCHC 1 cut(s) 224
MnlI CCTC 2 cut(s) 46, 253
MseI TTAA 2 cut(s) 63, 140
Mva1269I GAATGC 1 cut(s) 46
NdeII GATC 2 cut(s) 79, 132
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 2 cut(s) 49, 70
NmuCI GTSAC 1 cut(s) 11
PctI GAATGC 1 cut(s) 46
PkrI GCNGC 2 cut(s) 270, 273
PspFI CCCAGC 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 49, 70
PspPI GGNCC 1 cut(s) 48
SalI GTCGAC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 63, 140
SatI GCNGC 2 cut(s) 269, 272
Sau3AI GATC 2 cut(s) 79, 132
Sau96I GGNCC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 224
SetI ASST 3 cut(s) 57, 70, 150
SinI GGWCC 1 cut(s) 48
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 57
Tru1I TTAA 2 cut(s) 63, 140
Tru9I TTAA 2 cut(s) 63, 140
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 2 cut(s) 268, 271
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 176
TspRI CASTG 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.