Rh7DG219700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000269
Physical Location & Seq
Forward (+)
21367410 .. 21367808
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG219700.1

Sequence Viewer

Length: 399 bp
ATGTCGCCGAAGGTCTACACAAAGAAGGCACCCAAAAGGGCAAAACTGAGTAGCTCCAGTAACTCTGATGGAGGTGCCCGAAAGAGTTCTCGAATGGCGGCCCCTAAACCGAGCAGCTCCACAACGATCTCCGATGTAGGCCCCCGAAAGAGTACTCGAATTGCCGCCTCTAAAGCATCGGCTTCGGCGACCGTCTCTGAGGTCTCGAACCAAAATTCTCCAATTTTGGAGTCCGCAAAGAAAGCTTCTGTTAACGGCACCAAAGCGGTGGTTGAGCTACCTAAACTGAAACCTACTTCCGATGAAGCGGTAATTGAGGCACCGAAACCTACTTTCGATGAACCGGTGGTTGAGGCGCACCTTCCAATGATACGCGGTCGCAAAAAGAGAAGGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.96

Weight (kDa)

10.51

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 28, 74, 257, 319
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 375
AciI CCGC 6 cut(s) 98, 165, 234, 266, 308, 375
AcsI RAATTY 1 cut(s) 214
AfaI GTAC 1 cut(s) 154
AgeI ACCGGT 1 cut(s) 343
AluBI AGCT 4 cut(s) 54, 117, 245, 277
AluI AGCT 4 cut(s) 54, 117, 245, 277
Alw26I GTCTC 2 cut(s) 199, 208
AoxI GGCC 2 cut(s) 99, 139
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 214
AsiGI ACCGGT 1 cut(s) 343
Asp700I GAANNNNTTC 1 cut(s) 85
AspLEI GCGC 1 cut(s) 358
AspS9I GGNCC 2 cut(s) 100, 140
BaeGI GKGCMC 1 cut(s) 79
BanI GGYRCC 4 cut(s) 28, 74, 257, 319
BbvI GCAGC 1 cut(s) 126
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 271
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BcoDI GTCTC 2 cut(s) 199, 208
BfaI CTAG 1 cut(s) 397
BisI GCNGC 3 cut(s) 99, 115, 165
BlsI GCNGC 3 cut(s) 100, 116, 166
BmcAI AGTACT 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 100, 140
BmiI GGNNCC 6 cut(s) 30, 76, 102, 142, 259, 321
BmsI GCATC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 208
BsaWI WCCGGW 1 cut(s) 343
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 38, 189
BseNI ACTGG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 375
Bsh1285I CGRYCG 2 cut(s) 192, 379
BshFI GGCC 2 cut(s) 101, 141
BshNI GGYRCC 4 cut(s) 28, 74, 257, 319
BshTI ACCGGT 1 cut(s) 343
BsiEI CGRYCG 2 cut(s) 192, 379
BsiSI CCGG 1 cut(s) 344
BsmAI GTCTC 2 cut(s) 199, 208
BsmBI CGTCTC 1 cut(s) 199
BsnI GGCC 2 cut(s) 101, 141
Bso31I GGTCTC 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 6 cut(s) 98, 165, 234, 266, 308, 375
BspANI GGCC 2 cut(s) 101, 141
BspCNI CTCAG 2 cut(s) 39, 190
BspFNI CGCG 1 cut(s) 375
BspLI GGNNCC 6 cut(s) 30, 76, 102, 142, 259, 321
BspT107I GGYRCC 4 cut(s) 28, 74, 257, 319
BspTNI GGTCTC 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 343
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 343
BssMI GATC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 47, 198
BstFNI CGCG 1 cut(s) 375
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 2 cut(s) 199, 208
BstMBI GATC 1 cut(s) 126
BstMCI CGRYCG 2 cut(s) 192, 379
BstMWI GCNNNNNNNGC 2 cut(s) 173, 242
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 268
BsuRI GGCC 2 cut(s) 101, 141
CfoI GCGC 1 cut(s) 358
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 2 cut(s) 100, 140
Csp6I GTAC 1 cut(s) 153
CspAI ACCGGT 1 cut(s) 343
CviJI RGCY 7 cut(s) 54, 101, 117, 141, 182, 245, 277
CviKI_1 RGCY 7 cut(s) 54, 101, 117, 141, 182, 245, 277
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 2 cut(s) 47, 198
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 199
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 3 cut(s) 99, 115, 165
Fsp4HI GCNGC 3 cut(s) 99, 115, 165
FspBI CTAG 1 cut(s) 397
GlaI GCGC 1 cut(s) 357
GluI GCNGC 3 cut(s) 99, 115, 165
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 2 cut(s) 101, 141
HapII CCGG 1 cut(s) 344
HhaI GCGC 1 cut(s) 358
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 1 cut(s) 230
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 1 cut(s) 344
Hpy166II GTNNAC 2 cut(s) 16, 253
Hpy188I TCNGA 4 cut(s) 67, 133, 199, 301
Hpy188III TCNNGA 2 cut(s) 90, 205
Hpy8I GTNNAC 2 cut(s) 16, 253
HpyAV CCTTC 4 cut(s) 4, 19, 371, 384
HpyCH4III ACNGT 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 242
HpyF3I CTNAG 2 cut(s) 47, 198
HspAI GCGC 1 cut(s) 356
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 2 cut(s) 59, 122
LpnPI CCDG 2 cut(s) 70, 357
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 185
MaeI CTAG 1 cut(s) 397
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 4 cut(s) 159, 214, 222, 312
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 5 cut(s) 65, 178, 193, 310, 346
MroXI GAANNNNTTC 1 cut(s) 85
MseI TTAA 1 cut(s) 252
MspI CCGG 1 cut(s) 344
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 2 cut(s) 173, 242
NdeII GATC 1 cut(s) 126
NlaIV GGNNCC 6 cut(s) 30, 76, 102, 142, 259, 321
PcsI WCGNNNNNNNCGW 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 85
PinAI ACCGGT 1 cut(s) 343
PkrI GCNGC 3 cut(s) 100, 116, 166
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspN4I GGNNCC 6 cut(s) 30, 76, 102, 142, 259, 321
PspPI GGNCC 2 cut(s) 100, 140
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 3 cut(s) 99, 115, 165
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 2 cut(s) 100, 140
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 185
SgeI CNNG 9 cut(s) 69, 90, 102, 123, 156, 168, 217, 356, 386
Sse9I AATT 4 cut(s) 159, 214, 222, 312
SsiI CCGC 6 cut(s) 98, 165, 234, 266, 308, 375
SspMI CTAG 1 cut(s) 397
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 4 cut(s) 91, 157, 206, 336
TasI AATT 4 cut(s) 159, 214, 222, 312
TatI WGTACW 1 cut(s) 152
TauI GCSGC 2 cut(s) 101, 167
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 318, 354
XapI RAATTY 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 85
XspI CTAG 1 cut(s) 397
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.