Rh4DG157600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000269
Physical Location & Seq
Reverse (-)
31454468 .. 31455321
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG157600.1

Sequence Viewer

Length: 516 bp
ATGCCTCAATTGGCTGCCAAAGTGACTGGGCTGGAAAATAATATGTACAATTTGAGAGATGATATGATGGGAAAGATGGACAAAGTCTTGAGTATGTTGAACACTTTGACATCACAAAATGTGAATGCCAATCAGAACTCTCAAACTGATGGCTTAGCAGAGAAAGTGAGCCTCAATAAAGCTTCAAAAAAGAAAGCGGGAGAGCAATATGAGGTGTTACTGGTATATGGGGAAGAGTGGCGACAAAGAAAGAAGACCTCCTTGATTTGCCTATCTGACTCAACATCTGTAGTCAGCCCACTGAAAAGTATGAAGAAAGTTGATGCCAATCCCACGACCAAGAGTAACATAGAGAATATTAGTAACTTCAAAGTCAAGGGAGATCGAGAGGAGGCTGACAAAGAAGTGTTTATGTTTGTTTATGATGTGTCAGCTAAAGAGAATGAGACCATTGTGGATAGTGAAAATTTCTTCACTAGCCGAAAAGTAGTTTGGTCACTGAAACCTAACAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.34

Weight (kDa)

8.85

Isoelectric Point (pI)

26.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 466
AfaI GTAC 1 cut(s) 47
AgsI TTSAA 3 cut(s) 100, 186, 370
AjuI GAANNNNNNNTTGG 2 cut(s) 475, 507
AluBI AGCT 2 cut(s) 182, 434
AluI AGCT 2 cut(s) 182, 434
Alw26I GTCTC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 260
BccI CCATC 3 cut(s) 61, 70, 143
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 15
BlpI GCTNAGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 16
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 260
Bpu1102I GCTNAGC 1 cut(s) 154
BpuEI CTTGAG 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 440
Bse1I ACTGG 2 cut(s) 31, 225
Bse8I GATNNNNATC 1 cut(s) 327
BseJI GATNNNNATC 1 cut(s) 327
BseNI ACTGG 2 cut(s) 31, 225
BseRI GAGGAG 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 130
Bso31I GGTCTC 1 cut(s) 440
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 1 cut(s) 382
Bsp1720I GCTNAGC 1 cut(s) 154
BspACI CCGC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 440
BsrGI TGTACA 1 cut(s) 45
BsrI ACTGG 2 cut(s) 31, 225
BssMI GATC 1 cut(s) 382
Bst6I CTCTTC 1 cut(s) 228
BstAUI TGTACA 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 154
BstKTI GATC 1 cut(s) 385
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 288
BstV2I GAAGAC 1 cut(s) 260
BtsIMutI CAGTG 2 cut(s) 299, 497
Csp6I GTAC 1 cut(s) 46
CviJI RGCY 9 cut(s) 14, 31, 153, 171, 182, 297, 395, 434, 480
CviKI_1 RGCY 9 cut(s) 14, 31, 153, 171, 182, 297, 395, 434, 480
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 154
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco31I GGTCTC 1 cut(s) 440
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 1 cut(s) 477
GluI GCNGC 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 1 cut(s) 278
Hpy188I TCNGA 2 cut(s) 135, 277
Hpy188III TCNNGA 2 cut(s) 88, 386
HpyF3I CTNAG 1 cut(s) 154
Kzo9I GATC 1 cut(s) 382
LpnPI CCDG 3 cut(s) 12, 17, 206
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 5 cut(s) 22, 216, 344, 362, 495
MalI GATC 1 cut(s) 384
MboI GATC 1 cut(s) 382
MboII GAAGA 4 cut(s) 245, 265, 325, 463
MfeI CAATTG 1 cut(s) 8
MluCI AATT 3 cut(s) 8, 49, 466
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 6 cut(s) 15, 182, 205, 268, 382, 385
MunI CAATTG 1 cut(s) 8
Mva1269I GAATGC 1 cut(s) 130
NdeII GATC 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 22, 495
PctI GAATGC 1 cut(s) 130
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 382
SchI GAGTC 1 cut(s) 272
SetI ASST 5 cut(s) 184, 216, 260, 436, 508
SfaNI GCATC 1 cut(s) 313
SfcI CTRYAG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 3 cut(s) 8, 49, 466
SsiI CCGC 1 cut(s) 197
SspI AATATT 1 cut(s) 358
SspMI CTAG 1 cut(s) 477
TaqI TCGA 1 cut(s) 385
TasI AATT 3 cut(s) 8, 49, 466
TatI WGTACW 1 cut(s) 45
TscAI CASTG 2 cut(s) 306, 504
TseFI GTSAC 2 cut(s) 22, 495
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 2 cut(s) 22, 495
TspDTI ATGAA 1 cut(s) 326
TspRI CASTG 2 cut(s) 306, 504
Tth111I GACNNNGTC 1 cut(s) 83
XapI RAATTY 1 cut(s) 466
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.