Rroxscaffold_2G00133470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000269
Physical Location & Seq
Forward (+)
70802683 .. 70803165
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133470.1

Sequence Viewer

Length: 441 bp
ATGGAAAGAGCTTCCACCGAAGAGAAGGAACAAGATGTAGTGACCGATCGATGTGGTCAATCATCGGTTTATGAGGAAGAGTTGCTTGAGTCTTTGGTTGCGTACTTTAGCGATGAGAAAAAGGCAGCCTGTTCAGCAATTGGATTTGATGTGTTGTTGAAGATGTCGGGGAAGGAAAATTCACCACTCTATGTTGCGTGTCCTTGTGGACTCCGTAGAACCCAATGCATGTACTATAACAATGCATCTAAAAAGATTGAAATGGATGCAAGTGACTTTGAAAATGTGATGGGGTTGAAGAATGCCGGGTCCGAGGTTGACTTTAAAGGTTCCACTAATGATCACCCCGAGTTGATGGCGATAATAAACTCCTTGTGTGGGAAAGATAAGAAGATCGCTTTAAGGGACGTGCGAACTACCGAAGGATACAAAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

146

Amino Acids

16.27

Weight (kDa)

5.03

Isoelectric Point (pI)

53.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 2 cut(s) 104, 233
AfiI CCNNNNNNNGG 1 cut(s) 378
AgsI TTSAA 4 cut(s) 160, 260, 281, 298
AjiI CACGTC 1 cut(s) 409
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 309
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 174, 335
AvaI CYCGRG 1 cut(s) 347
AvaII GGWCC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 283, 349
BciVI GTATCC 1 cut(s) 419
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 1 cut(s) 307
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 347
BmgBI CACGTC 1 cut(s) 409
BmgT120I GGNCC 1 cut(s) 309
BmiI GGNNCC 2 cut(s) 310, 331
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 254, 256
BpuEI CTTGAG 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 307
Bsa29I ATCGAT 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 1 cut(s) 378
BseCI ATCGAT 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 378
BseXI GCAGC 1 cut(s) 137
Bsh1285I CGRYCG 1 cut(s) 49
BshVI ATCGAT 1 cut(s) 49
BsiEI CGRYCG 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 307
BsoBI CYCGRG 1 cut(s) 347
Bsp143I GATC 3 cut(s) 46, 340, 393
BspDI ATCGAT 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 310, 331
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 3 cut(s) 46, 340, 393
Bst6I CTCTTC 2 cut(s) 15, 72
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 3 cut(s) 49, 343, 396
BstMBI GATC 3 cut(s) 46, 340, 393
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 137
Bsu15I ATCGAT 1 cut(s) 49
BsuI GTATCC 1 cut(s) 419
BsuTUI ATCGAT 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 126
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 309
ClaI ATCGAT 1 cut(s) 49
Csp6I GTAC 2 cut(s) 103, 232
CviAII CATG 1 cut(s) 229
CviJI RGCY 2 cut(s) 11, 128
CviKI_1 RGCY 2 cut(s) 11, 128
CviQI GTAC 2 cut(s) 103, 232
DpnI GATC 3 cut(s) 48, 342, 395
DpnII GATC 3 cut(s) 46, 340, 393
DraI TTTAAA 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 15, 72
EarI CTCTTC 2 cut(s) 15, 72
Eco47I GGWCC 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 347
EcoT22I ATGCAT 2 cut(s) 230, 247
FaeI CATG 1 cut(s) 232
FaiI YATR 4 cut(s) 72, 192, 230, 237
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 1 cut(s) 419
FatI CATG 1 cut(s) 228
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HapII CCGG 1 cut(s) 306
Hin1II CATG 1 cut(s) 232
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 2 cut(s) 89, 210
HpaII CCGG 1 cut(s) 306
HphI GGTGA 2 cut(s) 174, 335
Hpy166II GTNNAC 2 cut(s) 209, 319
Hpy188I TCNGA 1 cut(s) 313
Hpy8I GTNNAC 2 cut(s) 209, 319
HpyAV CCTTC 3 cut(s) 19, 166, 416
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 3 cut(s) 228, 245, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 1 cut(s) 232
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 3 cut(s) 46, 340, 393
LpnPI CCDG 2 cut(s) 142, 319
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 2 cut(s) 254, 256
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 2 cut(s) 40, 272
MalI GATC 3 cut(s) 48, 342, 395
MboI GATC 3 cut(s) 46, 340, 393
MboII GAAGA 5 cut(s) 32, 89, 172, 310, 403
MfeI CAATTG 1 cut(s) 138
MluCI AATT 2 cut(s) 138, 178
MlyI GAGTC 2 cut(s) 98, 204
MnlI CCTC 2 cut(s) 67, 307
Mph1103I ATGCAT 2 cut(s) 230, 247
MseI TTAA 2 cut(s) 324, 401
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 307
MunI CAATTG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 134
NciI CCSGG 1 cut(s) 307
NdeII GATC 3 cut(s) 46, 340, 393
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 2 cut(s) 310, 331
NmuCI GTSAC 2 cut(s) 40, 272
NsiI ATGCAT 2 cut(s) 230, 247
NspI RCATGY 1 cut(s) 232
PctI GAATGC 1 cut(s) 307
PkrI GCNGC 1 cut(s) 127
Ple19I CGATCG 1 cut(s) 49
PleI GAGTC 2 cut(s) 97, 204
PpsI GAGTC 2 cut(s) 97, 204
PspN4I GGNNCC 2 cut(s) 310, 331
PspPI GGNCC 1 cut(s) 309
PvuI CGATCG 1 cut(s) 49
RsaI GTAC 2 cut(s) 104, 233
RsaNI GTAC 2 cut(s) 103, 232
SaqAI TTAA 2 cut(s) 324, 401
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 3 cut(s) 46, 340, 393
Sau96I GGNCC 1 cut(s) 309
SchI GAGTC 2 cut(s) 98, 204
ScrFI CCNGG 1 cut(s) 307
SetI ASST 4 cut(s) 13, 318, 331, 411
SfaNI GCATC 2 cut(s) 254, 256
SinI GGWCC 1 cut(s) 309
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 138, 178
StyD4I CCNGG 1 cut(s) 305
TaiI ACGT 1 cut(s) 411
TaqI TCGA 1 cut(s) 49
TaqII GACCGA 1 cut(s) 59
TasI AATT 2 cut(s) 138, 178
TatI WGTACW 1 cut(s) 231
Tru1I TTAA 2 cut(s) 324, 401
Tru9I TTAA 2 cut(s) 324, 401
TseFI GTSAC 2 cut(s) 40, 272
TseI GCWGC 1 cut(s) 125
Tsp45I GTSAC 2 cut(s) 40, 272
TspGWI ACGGA 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 309
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 232
Zsp2I ATGCAT 2 cut(s) 230, 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.