RchiOBHm_Chr7g0204351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000269
Physical Location & Seq
Forward (+)
22017743 .. 22018555
813 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18290

Sequence Viewer

Length: 813 bp
ATGTTTCAGTTTCGAGTTGAGATATCTCAAAAATGGAAACAGCTTCCAGCTGAAGAGAAGGAACAGTATGTAGTGACTGATCGATGTGGTCAGTCATCAGTTTCTGAGGAAGAGTTGCTTGAGTTGGTTCGGATTGATACCCGTTGCTCTCCAGACCGCTTCAGGTCTTTGGTTGCAGACTTTAGCGATGAGAAAAAGGCAGCCTGTTCAGCAATTGGATTTGATGTGTTGTTGAAGATGTCAGGAAGGAAAATTCACCACTCTATGTTGCGTGTCCTTGTGGACTCCGTAGACCCCAATGCATGTACTATAACTATGCACGGAAAGAAGATTGAAATGGATGCAAGTGACTTTGAAAATGTGATGGGGTTGAAGAATGCTGGGTCCGAGGTCGACTTTAAAGGTTCCACTAATGATCACCCTGAGTTGATGGCGATAATAAACTCCTTGTGTGGGAAGGATAATAAGATCAATTTAAGGGACGTGCAGAACTACATGAAGGATACAGAAGAAGTTGACAACAAGTTCAAGCGCCTGTTTGTGTTGTTCACAATGAGCACCATCCTTAGCCCATCTGCCTCACTGACAATACCAAAGAAGTGGCTGCTGGCCCTGAAGGACACTCGCCTGATTAGCTCTTTAAACTGGGCTGATTACTCATTCAAATGTTTAATGGAGGCCATCGTCAGTTTCAAAAAAGAATCCCAGTCCTATTGTAGCGGTTGTGTCCTGTTTCTGCAACTGTTCTATTTTGATTGTGTTTCACATGGGAAGACCATTGTGGACAAGTCCTTGTACCCAGTTGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

270

Amino Acids

30.69

Weight (kDa)

6.01

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1985 PF09331 100 - 226 5e-07 Domain of unknown function (DUF1985)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 291, 393
AciI CCGC 2 cut(s) 157, 720
AcsI RAATTY 1 cut(s) 252
AcuI CTGAAG 3 cut(s) 72, 145, 635
AfaI GTAC 2 cut(s) 307, 797
AfiI CCNNNNNNNGG 1 cut(s) 453
AgsI TTSAA 8 cut(s) 235, 335, 356, 373, 529, 664, 694, 806
AjiI CACGTC 1 cut(s) 484
AluBI AGCT 4 cut(s) 43, 50, 636, 809
AluI AGCT 4 cut(s) 43, 50, 636, 809
Alw21I GWGCWC 1 cut(s) 560
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 2 cut(s) 609, 678
ApeKI GCWGC 2 cut(s) 200, 604
ApoI RAATTY 1 cut(s) 252
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 2 cut(s) 384, 610
AsuHPI GGTGA 2 cut(s) 248, 410
AvaII GGWCC 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 779
Bbv12I GWGCWC 1 cut(s) 560
BbvI GCAGC 2 cut(s) 212, 591
BccI CCATC 5 cut(s) 358, 424, 569, 580, 689
BciVI GTATCC 1 cut(s) 496
BclI TGATCA 1 cut(s) 415
BfoI RGCGCY 1 cut(s) 535
BfuI GTATCC 1 cut(s) 496
BisI GCNGC 2 cut(s) 201, 605
BlsI GCNGC 2 cut(s) 202, 606
Bme18I GGWCC 1 cut(s) 384
BmgBI CACGTC 1 cut(s) 484
BmgT120I GGNCC 2 cut(s) 384, 610
BmiI GGNNCC 2 cut(s) 385, 406
BmrI ACTGGG 3 cut(s) 655, 700, 794
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 3 cut(s) 655, 700, 794
BpiI GAAGAC 1 cut(s) 779
BpmI CTGGAG 1 cut(s) 135
Bpu10I CCTNAGC 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 140
Bsa29I ATCGAT 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 387
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse1I ACTGG 3 cut(s) 650, 706, 800
BseCI ATCGAT 1 cut(s) 82
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 2 cut(s) 346, 561
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMII CTCAG 2 cut(s) 96, 414
BseNI ACTGG 3 cut(s) 650, 706, 800
BseXI GCAGC 2 cut(s) 212, 591
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 506
BshFI GGCC 2 cut(s) 611, 680
BshVI ATCGAT 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 560
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 1 cut(s) 453
BsmFI GGGAC 1 cut(s) 494
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 2 cut(s) 611, 680
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 3 cut(s) 79, 415, 468
BspACI CCGC 2 cut(s) 157, 720
BspANI GGCC 2 cut(s) 611, 680
BspCNI CTCAG 2 cut(s) 97, 415
BspDI ATCGAT 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 385, 406
BsrI ACTGG 3 cut(s) 650, 706, 800
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 3 cut(s) 79, 415, 468
Bst4CI ACNGT 2 cut(s) 66, 744
Bst6I CTCTTC 2 cut(s) 48, 105
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 3 cut(s) 105, 423, 566
BstF5I GGATG 2 cut(s) 346, 561
BstH2I RGCGCY 1 cut(s) 535
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 3 cut(s) 82, 418, 471
BstMBI GATC 3 cut(s) 79, 415, 468
BstMWI GCNNNNNNNGC 2 cut(s) 209, 633
BstNSI RCATGY 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 212, 591
BstV2I GAAGAC 1 cut(s) 779
BstXI CCANNNNNNTGG 1 cut(s) 600
Bsu15I ATCGAT 1 cut(s) 82
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 2 cut(s) 611, 680
BsuTUI ATCGAT 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 201
BtrI CACGTC 1 cut(s) 484
BtsCI GGATG 2 cut(s) 346, 561
BtsIMutI CAGTG 1 cut(s) 581
Cac8I GCNNGC 1 cut(s) 609
CaiI CAGNNNCTG 1 cut(s) 104
CfoI GCGC 1 cut(s) 534
Cfr13I GGNCC 2 cut(s) 384, 610
ClaI ATCGAT 1 cut(s) 82
Csp6I GTAC 2 cut(s) 306, 796
CviAII CATG 3 cut(s) 303, 496, 767
CviQI GTAC 2 cut(s) 306, 796
DdeI CTNAG 3 cut(s) 105, 423, 566
DpnI GATC 3 cut(s) 81, 417, 470
DpnII GATC 3 cut(s) 79, 415, 468
DraI TTTAAA 2 cut(s) 400, 642
Eam1104I CTCTTC 2 cut(s) 48, 105
EarI CTCTTC 2 cut(s) 48, 105
Eco32I GATATC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 384
Eco57I CTGAAG 3 cut(s) 72, 145, 635
EcoRV GATATC 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 304
FaeI CATG 3 cut(s) 306, 499, 770
FaiI YATR 7 cut(s) 69, 266, 304, 311, 317, 497, 768
FalI AAGNNNNNCTT 2 cut(s) 102, 134
FaqI GGGAC 1 cut(s) 494
FatI CATG 3 cut(s) 302, 495, 766
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 2 cut(s) 291, 393
Fnu4HI GCNGC 2 cut(s) 201, 605
FokI GGATG 2 cut(s) 353, 548
Fsp4HI GCNGC 2 cut(s) 201, 605
GlaI GCGC 1 cut(s) 533
GluI GCNGC 2 cut(s) 201, 605
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 535
HaeIII GGCC 2 cut(s) 611, 680
HhaI GCGC 1 cut(s) 534
Hin1II CATG 3 cut(s) 306, 499, 770
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HincII GTYRAC 2 cut(s) 394, 517
HindII GTYRAC 2 cut(s) 394, 517
HindIII AAGCTT 1 cut(s) 807
HinfI GANTC 2 cut(s) 284, 701
HphI GGTGA 2 cut(s) 248, 410
Hpy166II GTNNAC 6 cut(s) 283, 292, 394, 517, 549, 784
Hpy188I TCNGA 3 cut(s) 106, 132, 388
Hpy188III TCNNGA 2 cut(s) 152, 243
Hpy8I GTNNAC 6 cut(s) 283, 292, 394, 517, 549, 784
HpyAV CCTTC 5 cut(s) 52, 240, 451, 493, 610
HpyCH4III ACNGT 2 cut(s) 66, 744
HpyCH4IV ACGT 1 cut(s) 483
HpyCH4V TGCA 6 cut(s) 176, 302, 319, 344, 487, 739
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 633
HpyF3I CTNAG 3 cut(s) 105, 423, 566
HpySE526I ACGT 1 cut(s) 483
Hsp92II CATG 3 cut(s) 306, 499, 770
HspAI GCGC 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 3 cut(s) 79, 415, 468
Lsp1109I GCAGC 2 cut(s) 212, 591
LweI GCATC 1 cut(s) 331
MaeII ACGT 1 cut(s) 483
MaeIII GTNAC 2 cut(s) 73, 347
MalI GATC 3 cut(s) 81, 417, 470
MboI GATC 3 cut(s) 79, 415, 468
MboII GAAGA 7 cut(s) 65, 122, 247, 340, 385, 521, 784
MfeI CAATTG 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 3 cut(s) 213, 252, 472
MlyI GAGTC 1 cut(s) 278
MnlI CCTC 4 cut(s) 100, 382, 589, 670
Mph1103I ATGCAT 1 cut(s) 304
MseI TTAA 4 cut(s) 399, 476, 641, 671
MslI CAYNNNNRTG 1 cut(s) 664
MspA1I CMGCKG 1 cut(s) 50
MunI CAATTG 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 382
MwoI GCNNNNNNNGC 2 cut(s) 209, 633
NdeII GATC 3 cut(s) 79, 415, 468
NlaIII CATG 3 cut(s) 306, 499, 770
NlaIV GGNNCC 2 cut(s) 385, 406
NmuCI GTSAC 2 cut(s) 73, 347
NsiI ATGCAT 1 cut(s) 304
NspI RCATGY 1 cut(s) 306
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 701
PkrI GCNGC 2 cut(s) 202, 606
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 385, 406
PspPI GGNCC 2 cut(s) 384, 610
PstNI CAGNNNCTG 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 50
RsaI GTAC 2 cut(s) 307, 797
RsaNI GTAC 2 cut(s) 306, 796
RseI CAYNNNNRTG 1 cut(s) 664
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 4 cut(s) 399, 476, 641, 671
SatI GCNGC 2 cut(s) 201, 605
Sau3AI GATC 3 cut(s) 79, 415, 468
Sau96I GGNCC 2 cut(s) 384, 610
SchI GAGTC 1 cut(s) 278
SduI GDGCHC 1 cut(s) 560
SetI ASST 8 cut(s) 45, 52, 167, 393, 406, 486, 638, 811
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 1 cut(s) 384
SmiMI CAYNNNNRTG 1 cut(s) 664
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 3 cut(s) 213, 252, 472
SsiI CCGC 2 cut(s) 157, 720
TaaI ACNGT 2 cut(s) 66, 744
TaiI ACGT 1 cut(s) 486
TaqI TCGA 3 cut(s) 13, 82, 393
TasI AATT 3 cut(s) 213, 252, 472
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 1 cut(s) 701
Tru1I TTAA 4 cut(s) 399, 476, 641, 671
Tru9I TTAA 4 cut(s) 399, 476, 641, 671
TscAI CASTG 1 cut(s) 588
TseFI GTSAC 2 cut(s) 73, 347
TseI GCWGC 2 cut(s) 200, 604
Tsp45I GTSAC 2 cut(s) 73, 347
TspDTI ATGAA 1 cut(s) 512
TspGWI ACGGA 2 cut(s) 277, 336
TspRI CASTG 1 cut(s) 588
VpaK11BI GGWCC 1 cut(s) 384
XapI RAATTY 1 cut(s) 252
XceI RCATGY 1 cut(s) 306
XmiI GTMKAC 2 cut(s) 291, 393
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.