Rroxscaffold_3G00229940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000269
Physical Location & Seq
Reverse (-)
14482269 .. 14482523
255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00229940.1

Sequence Viewer

Length: 255 bp
ATGGAGGCCTCCGAAAGAGTACTCGAATTGCCGCCTCTAAAGCATCGGCTTCGGCAATGGTCTCTCGAGGTCTCGAACCAAAATTCTCCAATTTTGGAGTCCGCAAAGAAAGCTTCTATTAACGGCACCGAAGTGGTGGTTGAGGTACCTAAACCGAAACCTACTTCCGATGAAGTGGTAATTGAGGCACCGAAACCTACTTTTGATGAACCGGTGGTTGAGGCGGAGAAACCTCCTTCCAATGATACGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.34

Weight (kDa)

4.98

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 145
AccB1I GGYRCC 3 cut(s) 125, 145, 187
AccII CGCG 1 cut(s) 250
AciI CCGC 4 cut(s) 32, 102, 224, 250
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 2 cut(s) 21, 147
AgeI ACCGGT 1 cut(s) 211
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 2 cut(s) 66, 76
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 82
AsiGI ACCGGT 1 cut(s) 211
Asp718I GGTACC 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 65
BanI GGYRCC 3 cut(s) 125, 145, 187
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BcoDI GTCTC 2 cut(s) 66, 76
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
BmcAI AGTACT 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 65
BmiI GGNNCC 3 cut(s) 127, 147, 189
BmsI GCATC 1 cut(s) 52
BsaI GGTCTC 2 cut(s) 66, 76
BsaWI WCCGGW 1 cut(s) 211
Bse118I RCCGGY 1 cut(s) 211
Bse3DI GCAATG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 3 cut(s) 125, 145, 187
BshTI ACCGGT 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 212
BsmAI GTCTC 2 cut(s) 66, 76
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 2 cut(s) 66, 76
BsoBI CYCGRG 1 cut(s) 65
BspACI CCGC 4 cut(s) 32, 102, 224, 250
BspANI GGCC 1 cut(s) 8
BspFNI CGCG 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 127, 147, 189
BspT107I GGYRCC 3 cut(s) 125, 145, 187
BspTNI GGTCTC 2 cut(s) 66, 76
BsrDI GCAATG 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 211
BstFNI CGCG 1 cut(s) 250
BstMAI GTCTC 2 cut(s) 66, 76
BstMWI GCNNNNNNNGC 2 cut(s) 40, 110
BstUI CGCG 1 cut(s) 250
BsuRI GGCC 1 cut(s) 8
Cfr10I RCCGGY 1 cut(s) 211
Csp6I GTAC 2 cut(s) 20, 146
CspAI ACCGGT 1 cut(s) 211
CviJI RGCY 3 cut(s) 8, 49, 113
CviKI_1 RGCY 3 cut(s) 8, 49, 113
CviQI GTAC 2 cut(s) 20, 146
EciI GGCGGA 1 cut(s) 239
Eco147I AGGCCT 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 66, 76
Eco88I CYCGRG 1 cut(s) 65
Fnu4HI GCNGC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 32
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 212
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 1 cut(s) 98
HpaII CCGG 1 cut(s) 212
Hpy188I TCNGA 2 cut(s) 13, 169
Hpy188III TCNNGA 2 cut(s) 65, 73
HpyAV CCTTC 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 110
KpnI GGTACC 1 cut(s) 149
LpnPI CCDG 1 cut(s) 225
LweI GCATC 1 cut(s) 52
MluCI AATT 4 cut(s) 26, 82, 90, 180
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 7 cut(s) 19, 45, 61, 136, 178, 214, 243
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 131
MspI CCGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 250
MwoI GCNNNNNNNGC 2 cut(s) 40, 110
NlaIV GGNNCC 3 cut(s) 127, 147, 189
OliI CACNNNNGTG 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 65
PceI AGGCCT 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 211
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PspN4I GGNNCC 3 cut(s) 127, 147, 189
RsaI GTAC 2 cut(s) 21, 147
RsaNI GTAC 2 cut(s) 20, 146
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 32
ScaI AGTACT 1 cut(s) 21
SchI GAGTC 1 cut(s) 107
SetI ASST 7 cut(s) 72, 115, 147, 151, 163, 199, 235
SfaNI GCATC 1 cut(s) 52
Sfr274I CTCGAG 1 cut(s) 65
SgeI CNNG 5 cut(s) 35, 77, 79, 85, 224
SlaI CTCGAG 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 4 cut(s) 26, 82, 90, 180
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 4 cut(s) 32, 102, 224, 250
StuI AGGCCT 1 cut(s) 8
TaqI TCGA 3 cut(s) 24, 66, 74
TasI AATT 4 cut(s) 26, 82, 90, 180
TatI WGTACW 1 cut(s) 19
TauI GCSGC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TspDTI ATGAA 2 cut(s) 186, 222
XapI RAATTY 1 cut(s) 82
XhoI CTCGAG 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.