FvH4_7g12892

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000269
Physical Location & Seq
Reverse (-)
11654540 .. 11655417
878 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12892.t1

Sequence Viewer

Length: 570 bp
ATGGATTGTGTCAAGAGCGGCCCAACCATCGTGGACAAGTCACTGCACCCGGTTGAAAGTTGGGGCGACCGAGAAGCAAATAAGCTGCTGGGATGGGTAAACAATCAGGGTGGTTTGACGTCGGAGAGTGTTGATGTATCAAAGACCAAGGATCGTACATGGAGGGGGAAGGGACGTGCGGCTAGCAGCAAGGTCTCGGCAGACAAGTATGAGGAATTGGCTGGTAAAGTGGCTTCGCTGCAAGATGGCCTCGCTGAGGTATCGGGGAAGCTGCAAGATATGATGGACATGATGCAGACTTTAGTTTCCGCTCATAACAAGGCCAAGGAAGCTAATACAGAAGCAACTGGGTGTGTTGCCATTGTACCAATTAAGCAAGTAAGCCCCTCCAAGGCCCCCGACCCTATAGCTTCAGTGGTGGCAGACCAATACAGCCCTTGCAAATCTGCAGCTCCTCAAGATGGAAAGCCAGAGGTATCACCTATGGAAAAGAAGAAGAGCGTGTCTATTGTGGATGTAGAATCTGACTCTTCTGTTTTGAGTCCTATAAGATCTGTAAAGAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.08

Weight (kDa)

7.65

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 122
AccBSI CCGCTC 2 cut(s) 18, 311
AciI CCGC 3 cut(s) 18, 179, 309
AclWI GGATC 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 119
AfaI GTAC 2 cut(s) 157, 366
AfiI CCNNNNNNNGG 3 cut(s) 256, 391, 461
AgsI TTSAA 1 cut(s) 56
AjiI CACGTC 1 cut(s) 176
AluBI AGCT 5 cut(s) 85, 271, 332, 410, 452
AluI AGCT 5 cut(s) 85, 271, 332, 410, 452
Alw26I GTCTC 1 cut(s) 199
AlwI GGATC 1 cut(s) 159
AoxI GGCC 4 cut(s) 19, 247, 321, 393
ApeKI GCWGC 5 cut(s) 85, 186, 238, 271, 449
AspS9I GGNCC 2 cut(s) 20, 394
AsuC2I CCSGG 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 471
AsuNHI GCTAGC 1 cut(s) 182
BarI GAAGNNNNNNTAC 2 cut(s) 217, 249
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 5 cut(s) 72, 198, 225, 258, 461
BccI CCATC 5 cut(s) 35, 87, 239, 277, 455
BcnI CCSGG 1 cut(s) 50
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 2 cut(s) 405, 447
BglII AGATCT 1 cut(s) 551
BisI GCNGC 7 cut(s) 19, 86, 180, 187, 239, 272, 450
BlsI GCNGC 7 cut(s) 20, 87, 181, 188, 240, 273, 451
Bme1390I CCNGG 1 cut(s) 50
BmgBI CACGTC 1 cut(s) 176
BmgT120I GGNCC 2 cut(s) 20, 394
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 282
BmtI GCTAGC 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 357
Bpu10I CCTNAGC 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 441
BpuMI CCSGG 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 3 cut(s) 147, 324, 390
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 391, 461
Bse1I ACTGG 1 cut(s) 352
BseDI CCNNGG 3 cut(s) 147, 324, 390
BseGI GGATG 2 cut(s) 98, 520
BseLI CCNNNNNNNGG 3 cut(s) 256, 391, 461
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 1 cut(s) 444
BseXI GCAGC 5 cut(s) 72, 198, 225, 258, 461
BseYI CCCAGC 1 cut(s) 88
BsgI GTGCAG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 21, 249, 323, 395
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 186
BslI CCNNNNNNNGG 3 cut(s) 256, 391, 461
BsmAI GTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 4 cut(s) 21, 249, 323, 395
Bso31I GGTCTC 1 cut(s) 199
Bsp143I GATC 2 cut(s) 151, 551
BspACI CCGC 3 cut(s) 18, 179, 309
BspANI GGCC 4 cut(s) 21, 249, 323, 395
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 451
BspOI GCTAGC 1 cut(s) 186
BspPI GGATC 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 199
BsrBI CCGCTC 2 cut(s) 18, 311
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 147, 324, 390
BssMI GATC 2 cut(s) 151, 551
BssNI GRCGYC 1 cut(s) 119
BssT1I CCWWGG 3 cut(s) 147, 324, 390
Bst6I CTCTTC 2 cut(s) 491, 535
BstACI GRCGYC 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 255
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 98, 520
BstKTI GATC 2 cut(s) 154, 554
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 2 cut(s) 151, 551
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 2 cut(s) 405, 447
BstV1I GCAGC 5 cut(s) 72, 198, 225, 258, 461
BstX2I RGATCY 1 cut(s) 551
BstYI RGATCY 1 cut(s) 551
BsuRI GGCC 4 cut(s) 21, 249, 323, 395
BtrI CACGTC 1 cut(s) 176
BtsCI GGATG 2 cut(s) 98, 520
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 2 cut(s) 41, 420
Cac8I GCNNGC 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 20, 394
Csp6I GTAC 2 cut(s) 156, 365
CspCI CAANNNNNGTGG 4 cut(s) 12, 47, 91, 126
CviAII CATG 2 cut(s) 159, 289
CviQI GTAC 2 cut(s) 156, 365
DdeI CTNAG 1 cut(s) 255
DpnI GATC 2 cut(s) 153, 553
DpnII GATC 2 cut(s) 151, 551
Eam1104I CTCTTC 2 cut(s) 491, 535
EarI CTCTTC 2 cut(s) 491, 535
Eco130I CCWWGG 3 cut(s) 147, 324, 390
Eco31I GGTCTC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 396
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 394
EcoT14I CCWWGG 3 cut(s) 147, 324, 390
ErhI CCWWGG 3 cut(s) 147, 324, 390
FaeI CATG 2 cut(s) 162, 292
FaiI YATR 8 cut(s) 160, 210, 281, 290, 315, 407, 485, 548
FaqI GGGAC 1 cut(s) 186
FatI CATG 2 cut(s) 158, 288
Fnu4HI GCNGC 7 cut(s) 19, 86, 180, 187, 239, 272, 450
FokI GGATG 2 cut(s) 105, 527
Fsp4HI GCNGC 7 cut(s) 19, 86, 180, 187, 239, 272, 450
FspBI CTAG 1 cut(s) 183
GluI GCNGC 7 cut(s) 19, 86, 180, 187, 239, 272, 450
GsaI CCCAGC 1 cut(s) 92
HaeIII GGCC 4 cut(s) 21, 249, 323, 395
HapII CCGG 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 2 cut(s) 162, 292
HinfI GANTC 3 cut(s) 521, 527, 541
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 471
Hpy166II GTNNAC 2 cut(s) 34, 100
Hpy188I TCNGA 2 cut(s) 124, 526
Hpy188III TCNNGA 2 cut(s) 13, 458
Hpy8I GTNNAC 2 cut(s) 34, 100
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 163
HpyCH4IV ACGT 2 cut(s) 119, 175
HpyCH4V TGCA 6 cut(s) 46, 241, 274, 295, 441, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 2 cut(s) 119, 175
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 2 cut(s) 162, 292
Kzo9I GATC 2 cut(s) 151, 551
LguI GCTCTTC 1 cut(s) 491
LmnI GCTCC 1 cut(s) 457
LpnPI CCDG 6 cut(s) 63, 74, 92, 207, 333, 483
Lsp1109I GCAGC 5 cut(s) 72, 198, 225, 258, 461
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 183
MaeII ACGT 2 cut(s) 119, 175
MaeIII GTNAC 1 cut(s) 39
MalI GATC 2 cut(s) 153, 553
MbiI CCGCTC 2 cut(s) 18, 311
MboI GATC 2 cut(s) 151, 551
MboII GAAGA 3 cut(s) 505, 508, 522
MflI RGATCY 1 cut(s) 551
MluCI AATT 2 cut(s) 215, 369
MlyI GAGTC 2 cut(s) 521, 550
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 7 cut(s) 156, 205, 250, 260, 397, 465, 466
MseI TTAA 2 cut(s) 372, 568
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 329
NciI CCSGG 1 cut(s) 50
NdeII GATC 2 cut(s) 151, 551
NheI GCTAGC 1 cut(s) 182
NlaIII CATG 2 cut(s) 162, 292
NlaIV GGNNCC 1 cut(s) 396
NmeAIII GCCGAG 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 521
PkrI GCNGC 7 cut(s) 20, 87, 181, 188, 240, 273, 451
PleI GAGTC 2 cut(s) 521, 549
PpsI GAGTC 2 cut(s) 521, 549
PspFI CCCAGC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 2 cut(s) 20, 394
PstI CTGCAG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 551
RsaI GTAC 2 cut(s) 157, 366
RsaNI GTAC 2 cut(s) 156, 365
SapI GCTCTTC 1 cut(s) 491
SaqAI TTAA 2 cut(s) 372, 568
SatI GCNGC 7 cut(s) 19, 86, 180, 187, 239, 272, 450
Sau3AI GATC 2 cut(s) 151, 551
Sau96I GGNCC 2 cut(s) 20, 394
SchI GAGTC 2 cut(s) 521, 550
ScrFI CCNGG 1 cut(s) 50
SfaNI GCATC 1 cut(s) 282
SfcI CTRYAG 2 cut(s) 405, 447
SmlI CTYRAG 1 cut(s) 456
SmoI CTYRAG 1 cut(s) 456
Sse9I AATT 2 cut(s) 215, 369
SsiI CCGC 3 cut(s) 18, 179, 309
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 48
StyI CCWWGG 3 cut(s) 147, 324, 390
TaiI ACGT 2 cut(s) 122, 178
TaqII GACCGA 1 cut(s) 84
TasI AATT 2 cut(s) 215, 369
TauI GCSGC 2 cut(s) 21, 182
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 2 cut(s) 372, 568
Tru9I TTAA 2 cut(s) 372, 568
TscAI CASTG 2 cut(s) 48, 420
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 5 cut(s) 85, 186, 238, 271, 449
Tsp45I GTSAC 1 cut(s) 39
TspRI CASTG 2 cut(s) 48, 420
XagI CCTNNNNNAGG 1 cut(s) 254
XspI CTAG 1 cut(s) 183
ZraI GACGTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.