RLG00000020178

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000269
Physical Location & Seq
Forward (+)
62055389 .. 62056290
902 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020178

Sequence Viewer

Length: 666 bp
ATGAAAAGTTACAATGACAGAGACATGTGTGGAGATTTGACTAAGGCAGTTTCGAAGGGTTTGGGTGTAAAGAGATTTGAGAATCTCATACCTAACTGTGAGAAGATTTTCATACCAATGCATGACGTCAATCATTGGTACCTCCTTGGTGTGCCTCTTGATAATCAGACAGGAGAAGTGTGGGATAGCTTAGAATGTAACAGGAGACGAATGAATCTGTGCAAAGCCGCTTTACAAACACTGGACATTATCTACCACCATGTGGAGTTCAAAGTCAAGAATGTTGTGAACAAGAAGTTTGCCGACTTCCATGTATTCGAGCCGGCTCAATGCCCTAAACAAGAGGGTGGTTCTAACTGTGGGGTGTATGTGATCAAACACATGCAATGTTATGGATCTGAGTGGTGGCATCATTTTAACTCAAAAGAGTTGCGCATGGACTTAACCATTGAATTGGAAAGGAACAAATTCAATGAGTGCTGGAAATGGATCGAGGAACCCATCAAAACTCGGCCACCACCAATATGTTCTACACTTAAGACGACACAAAGGGAAACTAAAGCAGCACCGAAGAAAGGGACCGTGAAGAAACCAATCGTCCAACCACCTCACACTAGAGCTCAATCCAAGAGGGGTGTGGCATCAAATGTCCGTCACAGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

222

Amino Acids

25.72

Weight (kDa)

9.32

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 27 - 140 2.6e-14 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
Acc16I TGCGCA 1 cut(s) 434
Acc65I GGTACC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 138
AccB7I CCANNNNNTGG 1 cut(s) 262
AciI CCGC 1 cut(s) 228
AclWI GGATC 2 cut(s) 403, 497
AcoI YGGCCR 1 cut(s) 512
AcsI RAATTY 1 cut(s) 467
AcyI GRCGYC 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 262
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 262, 575
AflII CTTAAG 1 cut(s) 536
AflIII ACRYGT 1 cut(s) 24
AgsI TTSAA 3 cut(s) 271, 452, 472
AluBI AGCT 2 cut(s) 189, 620
AluI AGCT 2 cut(s) 189, 620
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 2 cut(s) 15, 199
AlwI GGATC 2 cut(s) 403, 497
AoxI GGCC 1 cut(s) 512
ApeKI GCWGC 1 cut(s) 563
ApoI RAATTY 1 cut(s) 467
Asp700I GAANNNNTTC 2 cut(s) 107, 467
Asp718I GGTACC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 435
AspS9I GGNCC 1 cut(s) 579
AsuII TTCGAA 1 cut(s) 53
AvaII GGWCC 1 cut(s) 579
BanI GGYRCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 1 cut(s) 575
BccI CCATC 1 cut(s) 509
BclI TGATCA 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 15, 199
BfaI CTAG 1 cut(s) 615
BfrI CTTAAG 1 cut(s) 536
BisI GCNGC 2 cut(s) 228, 564
BlsI GCNGC 2 cut(s) 229, 565
Bme18I GGWCC 1 cut(s) 579
BmgT120I GGNCC 1 cut(s) 579
BmiI GGNNCC 3 cut(s) 140, 498, 580
BmsI GCATC 2 cut(s) 418, 650
Bpu14I TTCGAA 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 575
Bse118I RCCGGY 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 2 cut(s) 262, 575
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 575
BshFI GGCC 1 cut(s) 514
BshNI GGYRCC 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 622
BsiSI CCGG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 592
BslI CCNNNNNNNGG 2 cut(s) 262, 575
BsmAI GTCTC 2 cut(s) 15, 199
BsmBI CGTCTC 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 592
BsnI GGCC 1 cut(s) 514
Bsp119I TTCGAA 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 3 cut(s) 372, 395, 489
BspACI CCGC 1 cut(s) 228
BspANI GGCC 1 cut(s) 514
BspCNI CTCAG 1 cut(s) 391
BspLI GGNNCC 3 cut(s) 140, 498, 580
BspPI GGATC 2 cut(s) 403, 497
BspT104I TTCGAA 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 392
BsrFI RCCGGY 1 cut(s) 322
BsrI ACTGG 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 3 cut(s) 372, 395, 489
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 4 cut(s) 98, 359, 583, 659
BstACI GRCGYC 1 cut(s) 126
BstAFI CTTAAG 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 3 cut(s) 42, 190, 399
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 3 cut(s) 375, 398, 492
BstMAI GTCTC 2 cut(s) 15, 199
BstMBI GATC 3 cut(s) 372, 395, 489
BstNSI RCATGY 2 cut(s) 28, 385
BstV1I GCAGC 1 cut(s) 575
BstX2I RGATCY 1 cut(s) 395
BstXI CCANNNNNNTGG 1 cut(s) 454
BstYI RGATCY 1 cut(s) 395
BsuRI GGCC 1 cut(s) 514
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 324
CfoI GCGC 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 579
Csp6I GTAC 1 cut(s) 139
CviAII CATG 6 cut(s) 25, 122, 260, 311, 382, 436
CviJI RGCY 6 cut(s) 189, 227, 322, 326, 514, 620
CviKI_1 RGCY 6 cut(s) 189, 227, 322, 326, 514, 620
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 3 cut(s) 42, 190, 399
DpnI GATC 3 cut(s) 374, 397, 491
DpnII GATC 3 cut(s) 372, 395, 489
DraIII CACNNNGTG 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 512
Ecl136II GAGCTC 1 cut(s) 620
Eco130I CCWWGG 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 579
Eco53kI GAGCTC 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 620
EcoT14I CCWWGG 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 622
ErhI CCWWGG 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 6 cut(s) 28, 125, 263, 314, 385, 439
FaqI GGGAC 1 cut(s) 592
FatI CATG 6 cut(s) 24, 121, 259, 310, 381, 435
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 228, 564
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 2 cut(s) 228, 564
FspBI CTAG 1 cut(s) 615
FspI TGCGCA 1 cut(s) 434
GlaI GCGC 1 cut(s) 434
GluI GCNGC 2 cut(s) 228, 564
HaeIII GGCC 1 cut(s) 514
HapII CCGG 1 cut(s) 323
HhaI GCGC 1 cut(s) 435
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 6 cut(s) 28, 125, 263, 314, 385, 439
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HinfI GANTC 2 cut(s) 82, 214
HpaII CCGG 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 2 cut(s) 168, 400
Hpy188III TCNNGA 2 cut(s) 158, 277
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 4 cut(s) 98, 359, 583, 659
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 121, 222, 385
HpyF3I CTNAG 3 cut(s) 42, 190, 399
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 6 cut(s) 28, 125, 263, 314, 385, 439
HspAI GCGC 1 cut(s) 433
KpnI GGTACC 1 cut(s) 142
KroI GCCGGC 1 cut(s) 322
KroNI GCCGGC 1 cut(s) 324
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 3 cut(s) 372, 395, 489
LpnPI CCDG 5 cut(s) 156, 187, 227, 336, 466
Lsp1109I GCAGC 1 cut(s) 575
LweI GCATC 2 cut(s) 418, 650
MaeI CTAG 1 cut(s) 615
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 8, 197, 653
MalI GATC 3 cut(s) 374, 397, 491
MboI GATC 3 cut(s) 372, 395, 489
MboII GAAGA 3 cut(s) 115, 583, 598
MflI RGATCY 1 cut(s) 395
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 2 cut(s) 452, 467
MmeI TCCRAC 1 cut(s) 625
MnlI CCTC 6 cut(s) 152, 165, 337, 487, 618, 624
Mph1103I ATGCAT 1 cut(s) 123
MroNI GCCGGC 1 cut(s) 322
MroXI GAANNNNTTC 2 cut(s) 107, 467
MseI TTAA 3 cut(s) 417, 443, 537
MslI CAYNNNNRTG 2 cut(s) 116, 523
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 1 cut(s) 323
NaeI GCCGGC 1 cut(s) 324
NdeII GATC 3 cut(s) 372, 395, 489
NgoMIV GCCGGC 1 cut(s) 322
NlaIII CATG 6 cut(s) 28, 125, 263, 314, 385, 439
NlaIV GGNNCC 3 cut(s) 140, 498, 580
NmeAIII GCCGAG 1 cut(s) 490
NmuCI GTSAC 1 cut(s) 653
NsbI TGCGCA 1 cut(s) 434
NsiI ATGCAT 1 cut(s) 123
NspI RCATGY 2 cut(s) 28, 385
NspV TTCGAA 1 cut(s) 53
PciI ACATGT 1 cut(s) 24
PdiI GCCGGC 1 cut(s) 324
PdmI GAANNNNTTC 2 cut(s) 107, 467
PfeI GAWTC 2 cut(s) 82, 214
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 2 cut(s) 229, 565
PscI ACATGT 1 cut(s) 24
Psp124BI GAGCTC 1 cut(s) 622
PspN4I GGNNCC 3 cut(s) 140, 498, 580
PspPI GGNCC 1 cut(s) 579
PsuI RGATCY 1 cut(s) 395
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 2 cut(s) 116, 523
SacI GAGCTC 1 cut(s) 622
SaqAI TTAA 3 cut(s) 417, 443, 537
SatI GCNGC 2 cut(s) 228, 564
Sau3AI GATC 3 cut(s) 372, 395, 489
Sau96I GGNCC 1 cut(s) 579
SduI GDGCHC 1 cut(s) 622
SetI ASST 7 cut(s) 94, 129, 144, 191, 610, 622, 665
SfaNI GCATC 2 cut(s) 418, 650
SfuI TTCGAA 1 cut(s) 53
SinI GGWCC 1 cut(s) 579
SmiMI CAYNNNNRTG 2 cut(s) 116, 523
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 2 cut(s) 452, 467
SsiI CCGC 1 cut(s) 228
SspMI CTAG 1 cut(s) 615
SstI GAGCTC 1 cut(s) 622
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 4 cut(s) 98, 359, 583, 659
TaiI ACGT 1 cut(s) 129
TaqI TCGA 3 cut(s) 53, 318, 492
TasI AATT 2 cut(s) 452, 467
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 2 cut(s) 82, 214
Tru1I TTAA 3 cut(s) 417, 443, 537
Tru9I TTAA 3 cut(s) 417, 443, 537
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 1 cut(s) 563
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 3 cut(s) 17, 100, 227
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 1 cut(s) 246
Van91I CCANNNNNTGG 1 cut(s) 262
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 579
XapI RAATTY 1 cut(s) 467
XceI RCATGY 2 cut(s) 28, 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XmnI GAANNNNTTC 2 cut(s) 107, 467
XspI CTAG 1 cut(s) 615
ZraI GACGTC 1 cut(s) 127
Zsp2I ATGCAT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.