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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 253 |
| AccB1I | GGYRCC | 5 cut(s) | 28, 74, 253, 295, 376 |
| AccI | GTMKAC | 3 cut(s) | 15, 669, 771 |
| AccII | CGCG | 1 cut(s) | 164 |
| AciI | CCGC | 6 cut(s) | 98, 210, 242, 284, 332, 535 |
| AcsI | RAATTY | 3 cut(s) | 190, 630, 1678 |
| AcuI | CTGAAG | 2 cut(s) | 896, 1668 |
| AfaI | GTAC | 5 cut(s) | 154, 255, 685, 1055, 1437 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 831, 977, 1084, 1439 |
| AgeI | ACCGGT | 2 cut(s) | 319, 1432 |
| AhlI | ACTAGT | 1 cut(s) | 1688 |
| AjiI | CACGTC | 1 cut(s) | 862 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 292, 324, 1687, 1719 |
| Alw21I | GWGCWC | 1 cut(s) | 938 |
| Alw26I | GTCTC | 5 cut(s) | 175, 184, 347, 366, 1652 |
| AoxI | GGCC | 3 cut(s) | 99, 139, 1182 |
| ApeKI | GCWGC | 4 cut(s) | 51, 578, 1226, 1243 |
| ApoI | RAATTY | 3 cut(s) | 190, 630, 1678 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1605, 1637 |
| AsiGI | ACCGGT | 2 cut(s) | 319, 1432 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 85, 1137 |
| Asp718I | GGTACC | 1 cut(s) | 253 |
| AspLEI | GCGC | 1 cut(s) | 912 |
| AspS9I | GGNCC | 4 cut(s) | 100, 140, 762, 1075 |
| AsuHPI | GGTGA | 4 cut(s) | 626, 788, 1117, 1210 |
| AvaII | GGWCC | 2 cut(s) | 762, 1075 |
| BaeGI | GKGCMC | 1 cut(s) | 79 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 967, 1000 |
| BanI | GGYRCC | 5 cut(s) | 28, 74, 253, 295, 376 |
| BbsI | GAAGAC | 3 cut(s) | 1037, 1452, 1472 |
| Bbv12I | GWGCWC | 1 cut(s) | 938 |
| BbvCI | CCTCAGC | 1 cut(s) | 403 |
| BbvI | GCAGC | 4 cut(s) | 63, 590, 1213, 1230 |
| BccI | CCATC | 9 cut(s) | 62, 128, 736, 802, 947, 958, 1273, 1282, 1355 |
| BciVI | GTATCC | 2 cut(s) | 874, 995 |
| BclI | TGATCA | 1 cut(s) | 793 |
| BcoDI | GTCTC | 5 cut(s) | 175, 184, 347, 366, 1652 |
| BcuI | ACTAGT | 1 cut(s) | 1688 |
| BfaI | CTAG | 1 cut(s) | 1689 |
| BfmI | CTRYAG | 2 cut(s) | 666, 1500 |
| BfoI | RGCGCY | 1 cut(s) | 913 |
| BfuI | GTATCC | 2 cut(s) | 874, 995 |
| BisI | GCNGC | 5 cut(s) | 52, 99, 579, 1227, 1244 |
| BlpI | GCTNAGC | 1 cut(s) | 1366 |
| BlsI | GCNGC | 5 cut(s) | 53, 100, 580, 1228, 1245 |
| BmcAI | AGTACT | 1 cut(s) | 154 |
| Bme18I | GGWCC | 2 cut(s) | 762, 1075 |
| BmgBI | CACGTC | 1 cut(s) | 862 |
| BmgT120I | GGNCC | 4 cut(s) | 100, 140, 762, 1075 |
| BmrI | ACTGGG | 1 cut(s) | 1052 |
| BmsI | GCATC | 2 cut(s) | 709, 1525 |
| BmuI | ACTGGG | 1 cut(s) | 1052 |
| BpiI | GAAGAC | 3 cut(s) | 1037, 1452, 1472 |
| BpmI | CTGGAG | 3 cut(s) | 40, 513, 1431 |
| Bpu10I | CCTNAGC | 2 cut(s) | 403, 944 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1366 |
| BpuEI | CTTGAG | 2 cut(s) | 518, 1321 |
| BsaAI | YACGTR | 1 cut(s) | 700 |
| BsaI | GGTCTC | 3 cut(s) | 175, 184, 1652 |
| BsaJI | CCNNGG | 1 cut(s) | 765 |
| BsaWI | WCCGGW | 2 cut(s) | 319, 1432 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 831, 977, 1084, 1439 |
| Bse118I | RCCGGY | 2 cut(s) | 319, 1432 |
| Bse1I | ACTGG | 3 cut(s) | 57, 461, 1058 |
| Bse3DI | GCAATG | 1 cut(s) | 571 |
| BseDI | CCNNGG | 1 cut(s) | 765 |
| BseGI | GGATG | 3 cut(s) | 724, 939, 1135 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 831, 977, 1084, 1439 |
| BseMI | GCAATG | 1 cut(s) | 571 |
| BseMII | CTCAG | 2 cut(s) | 165, 417 |
| BseNI | ACTGG | 3 cut(s) | 57, 461, 1058 |
| BseSI | GKGCMC | 1 cut(s) | 79 |
| BseXI | GCAGC | 4 cut(s) | 63, 590, 1213, 1230 |
| BseYI | CCCAGC | 1 cut(s) | 758 |
| Bsh1236I | CGCG | 1 cut(s) | 164 |
| BshFI | GGCC | 3 cut(s) | 101, 141, 1184 |
| BshNI | GGYRCC | 5 cut(s) | 28, 74, 253, 295, 376 |
| BshTI | ACCGGT | 2 cut(s) | 319, 1432 |
| BsiHKAI | GWGCWC | 1 cut(s) | 938 |
| BsiSI | CCGG | 2 cut(s) | 320, 1433 |
| BslFI | GGGAC | 2 cut(s) | 872, 1088 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 831, 977, 1084, 1439 |
| BsmAI | GTCTC | 5 cut(s) | 175, 184, 347, 366, 1652 |
| BsmBI | CGTCTC | 1 cut(s) | 347 |
| BsmFI | GGGAC | 2 cut(s) | 872, 1088 |
| BsmI | GAATGC | 1 cut(s) | 760 |
| BsnI | GGCC | 3 cut(s) | 101, 141, 1184 |
| Bso31I | GGTCTC | 3 cut(s) | 175, 184, 1652 |
| Bsp1286I | GDGCHC | 2 cut(s) | 79, 938 |
| Bsp143I | GATC | 5 cut(s) | 793, 846, 1159, 1177, 1594 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1366 |
| Bsp68I | TCGCGA | 1 cut(s) | 164 |
| BspACI | CCGC | 6 cut(s) | 98, 210, 242, 284, 332, 535 |
| BspANI | GGCC | 3 cut(s) | 101, 141, 1184 |
| BspCNI | CTCAG | 2 cut(s) | 166, 416 |
| BspFNI | CGCG | 1 cut(s) | 164 |
| BspT107I | GGYRCC | 5 cut(s) | 28, 74, 253, 295, 376 |
| BspTNI | GGTCTC | 3 cut(s) | 175, 184, 1652 |
| BsrDI | GCAATG | 1 cut(s) | 571 |
| BsrFI | RCCGGY | 2 cut(s) | 319, 1432 |
| BsrI | ACTGG | 3 cut(s) | 57, 461, 1058 |
| BssAI | RCCGGY | 2 cut(s) | 319, 1432 |
| BssECI | CCNNGG | 1 cut(s) | 765 |
| BssMI | GATC | 5 cut(s) | 793, 846, 1159, 1177, 1594 |
| Bst4CI | ACNGT | 3 cut(s) | 169, 980, 1002 |
| Bst6I | CTCTTC | 3 cut(s) | 462, 483, 1644 |
| BstBAI | YACGTR | 1 cut(s) | 700 |
| BstDEI | CTNAG | 6 cut(s) | 174, 403, 840, 944, 1265, 1366 |
| BstF5I | GGATG | 3 cut(s) | 724, 939, 1135 |
| BstFNI | CGCG | 1 cut(s) | 164 |
| BstH2I | RGCGCY | 1 cut(s) | 913 |
| BstHHI | GCGC | 1 cut(s) | 912 |
| BstKTI | GATC | 5 cut(s) | 796, 849, 1162, 1180, 1597 |
| BstMAI | GTCTC | 5 cut(s) | 175, 184, 347, 366, 1652 |
| BstMBI | GATC | 5 cut(s) | 793, 846, 1159, 1177, 1594 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 218, 413, 587 |
| BstNSI | RCATGY | 1 cut(s) | 684 |
| BstSFI | CTRYAG | 2 cut(s) | 666, 1500 |
| BstSLI | GKGCMC | 1 cut(s) | 79 |
| BstUI | CGCG | 1 cut(s) | 164 |
| BstV1I | GCAGC | 4 cut(s) | 63, 590, 1213, 1230 |
| BstV2I | GAAGAC | 3 cut(s) | 1037, 1452, 1472 |
| BsuI | GTATCC | 2 cut(s) | 874, 995 |
| BsuRI | GGCC | 3 cut(s) | 101, 141, 1184 |
| BtrI | CACGTC | 1 cut(s) | 862 |
| BtsCI | GGATG | 3 cut(s) | 724, 939, 1135 |
| BtsIMutI | CAGTG | 2 cut(s) | 959, 1511 |
| BtuMI | TCGCGA | 1 cut(s) | 164 |
| CfoI | GCGC | 1 cut(s) | 912 |
| Cfr10I | RCCGGY | 2 cut(s) | 319, 1432 |
| Cfr13I | GGNCC | 4 cut(s) | 100, 140, 762, 1075 |
| CseI | GACGC | 1 cut(s) | 364 |
| Csp6I | GTAC | 5 cut(s) | 153, 254, 684, 1054, 1436 |
| CspAI | ACCGGT | 2 cut(s) | 319, 1432 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1099, 1134 |
| CviAII | CATG | 5 cut(s) | 681, 1025, 1079, 1439, 1546 |
| CviQI | GTAC | 5 cut(s) | 153, 254, 684, 1054, 1436 |
| DdeI | CTNAG | 6 cut(s) | 174, 403, 840, 944, 1265, 1366 |
| DpnI | GATC | 5 cut(s) | 795, 848, 1161, 1179, 1596 |
| DpnII | GATC | 5 cut(s) | 793, 846, 1159, 1177, 1594 |
| DraI | TTTAAA | 1 cut(s) | 778 |
| Eam1104I | CTCTTC | 3 cut(s) | 462, 483, 1644 |
| EarI | CTCTTC | 3 cut(s) | 462, 483, 1644 |
| EciI | GGCGGA | 1 cut(s) | 347 |
| Eco31I | GGTCTC | 3 cut(s) | 175, 184, 1652 |
| Eco32I | GATATC | 1 cut(s) | 438 |
| Eco47I | GGWCC | 2 cut(s) | 762, 1075 |
| Eco57I | CTGAAG | 2 cut(s) | 896, 1668 |
| EcoO109I | RGGNCCY | 1 cut(s) | 140 |
| EcoRV | GATATC | 1 cut(s) | 438 |
| EcoT22I | ATGCAT | 1 cut(s) | 682 |
| Esp3I | CGTCTC | 1 cut(s) | 347 |
| FaeI | CATG | 5 cut(s) | 684, 1028, 1082, 1442, 1549 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 480, 512, 1457, 1489 |
| FaqI | GGGAC | 2 cut(s) | 872, 1088 |
| FatI | CATG | 5 cut(s) | 680, 1024, 1078, 1438, 1545 |
| FauNDI | CATATG | 1 cut(s) | 1192 |
| FbaI | TGATCA | 1 cut(s) | 793 |
| FblI | GTMKAC | 3 cut(s) | 15, 669, 771 |
| Fnu4HI | GCNGC | 5 cut(s) | 52, 99, 579, 1227, 1244 |
| FokI | GGATG | 3 cut(s) | 731, 926, 1142 |
| Fsp4HI | GCNGC | 5 cut(s) | 52, 99, 579, 1227, 1244 |
| FspBI | CTAG | 1 cut(s) | 1689 |
| GlaI | GCGC | 1 cut(s) | 911 |
| GluI | GCNGC | 5 cut(s) | 52, 99, 579, 1227, 1244 |
| GsaI | CCCAGC | 1 cut(s) | 762 |
| GsuI | CTGGAG | 3 cut(s) | 40, 513, 1431 |
| HaeII | RGCGCY | 1 cut(s) | 913 |
| HaeIII | GGCC | 3 cut(s) | 101, 141, 1184 |
| HapII | CCGG | 2 cut(s) | 320, 1433 |
| HgaI | GACGC | 1 cut(s) | 364 |
| HhaI | GCGC | 1 cut(s) | 912 |
| Hin1II | CATG | 5 cut(s) | 684, 1028, 1082, 1442, 1549 |
| Hin6I | GCGC | 1 cut(s) | 910 |
| HinP1I | GCGC | 1 cut(s) | 910 |
| HincII | GTYRAC | 3 cut(s) | 229, 772, 895 |
| HindII | GTYRAC | 3 cut(s) | 229, 772, 895 |
| HindIII | AAGCTT | 2 cut(s) | 219, 1065 |
| HinfI | GANTC | 5 cut(s) | 159, 206, 662, 821, 1490 |
| HpaII | CCGG | 2 cut(s) | 320, 1433 |
| HphI | GGTGA | 4 cut(s) | 626, 788, 1117, 1210 |
| Hpy166II | GTNNAC | 9 cut(s) | 16, 229, 661, 670, 772, 895, 927, 1042, 1108 |
| Hpy188I | TCNGA | 9 cut(s) | 67, 133, 175, 277, 766, 1219, 1320, 1347, 1489 |
| Hpy188III | TCNNGA | 8 cut(s) | 90, 163, 181, 363, 530, 621, 1300, 1598 |
| Hpy8I | GTNNAC | 9 cut(s) | 16, 229, 661, 670, 772, 895, 927, 1042, 1108 |
| Hpy99I | CGWCG | 1 cut(s) | 169 |
| HpyCH4III | ACNGT | 3 cut(s) | 169, 980, 1002 |
| HpyCH4IV | ACGT | 2 cut(s) | 699, 861 |
| HpyCH4V | TGCA | 7 cut(s) | 680, 697, 722, 865, 997, 1246, 1260 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 218, 413, 587 |
| HpyF3I | CTNAG | 6 cut(s) | 174, 403, 840, 944, 1265, 1366 |
| HpySE526I | ACGT | 2 cut(s) | 699, 861 |
| Hsp92II | CATG | 5 cut(s) | 684, 1028, 1082, 1442, 1549 |
| HspAI | GCGC | 1 cut(s) | 910 |
| KpnI | GGTACC | 1 cut(s) | 257 |
| Ksp22I | TGATCA | 1 cut(s) | 793 |
| Kzo9I | GATC | 5 cut(s) | 793, 846, 1159, 1177, 1594 |
| LmnI | GCTCC | 3 cut(s) | 59, 122, 475 |
| Lsp1109I | GCAGC | 4 cut(s) | 63, 590, 1213, 1230 |
| LweI | GCATC | 2 cut(s) | 709, 1525 |
| MaeI | CTAG | 1 cut(s) | 1689 |
| MaeII | ACGT | 2 cut(s) | 699, 861 |
| MaeIII | GTNAC | 6 cut(s) | 59, 725, 1428, 1556, 1574, 1707 |
| MalI | GATC | 5 cut(s) | 795, 848, 1161, 1179, 1596 |
| MboI | GATC | 5 cut(s) | 793, 846, 1159, 1177, 1594 |
| MfeI | CAATTG | 2 cut(s) | 591, 1012 |
| MhlI | GDGCHC | 2 cut(s) | 79, 938 |
| MluCI | AATT | 7 cut(s) | 190, 198, 510, 591, 630, 1012, 1678 |
| MlyI | GAGTC | 4 cut(s) | 215, 656, 815, 1484 |
| Mph1103I | ATGCAT | 1 cut(s) | 682 |
| MroXI | GAANNNNTTC | 2 cut(s) | 85, 1137 |
| MseI | TTAA | 7 cut(s) | 264, 291, 777, 815, 854, 1203, 1713 |
| MspA1I | CMGCKG | 2 cut(s) | 407, 1646 |
| MspI | CCGG | 2 cut(s) | 320, 1433 |
| MunI | CAATTG | 2 cut(s) | 591, 1012 |
| Mva1269I | GAATGC | 1 cut(s) | 760 |
| MvnI | CGCG | 1 cut(s) | 164 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 218, 413, 587 |
| NdeI | CATATG | 1 cut(s) | 1192 |
| NdeII | GATC | 5 cut(s) | 793, 846, 1159, 1177, 1594 |
| NlaIII | CATG | 5 cut(s) | 684, 1028, 1082, 1442, 1549 |
| NmuCI | GTSAC | 2 cut(s) | 725, 1707 |
| NruI | TCGCGA | 1 cut(s) | 164 |
| NsiI | ATGCAT | 1 cut(s) | 682 |
| NspI | RCATGY | 1 cut(s) | 684 |
| PctI | GAATGC | 1 cut(s) | 760 |
| PdmI | GAANNNNTTC | 2 cut(s) | 85, 1137 |
| PfeI | GAWTC | 1 cut(s) | 159 |
| PflFI | GACNNNGTC | 2 cut(s) | 358, 1295 |
| PinAI | ACCGGT | 2 cut(s) | 319, 1432 |
| PkrI | GCNGC | 5 cut(s) | 53, 100, 580, 1228, 1245 |
| PleI | GAGTC | 4 cut(s) | 214, 656, 815, 1484 |
| PpsI | GAGTC | 4 cut(s) | 214, 656, 815, 1484 |
| Ppu21I | YACGTR | 1 cut(s) | 700 |
| PspFI | CCCAGC | 1 cut(s) | 758 |
| PspPI | GGNCC | 4 cut(s) | 100, 140, 762, 1075 |
| PsyI | GACNNNGTC | 2 cut(s) | 358, 1295 |
| PvuII | CAGCTG | 2 cut(s) | 407, 1646 |
| RruI | TCGCGA | 1 cut(s) | 164 |
| RsaI | GTAC | 5 cut(s) | 154, 255, 685, 1055, 1437 |
| RsaNI | GTAC | 5 cut(s) | 153, 254, 684, 1054, 1436 |
| SalI | GTCGAC | 1 cut(s) | 770 |
| SaqAI | TTAA | 7 cut(s) | 264, 291, 777, 815, 854, 1203, 1713 |
| SatI | GCNGC | 5 cut(s) | 52, 99, 579, 1227, 1244 |
| Sau3AI | GATC | 5 cut(s) | 793, 846, 1159, 1177, 1594 |
| Sau96I | GGNCC | 4 cut(s) | 100, 140, 762, 1075 |
| ScaI | AGTACT | 1 cut(s) | 154 |
| SchI | GAGTC | 4 cut(s) | 215, 656, 815, 1484 |
| SduI | GDGCHC | 2 cut(s) | 79, 938 |
| SfaNI | GCATC | 2 cut(s) | 709, 1525 |
| SfcI | CTRYAG | 2 cut(s) | 666, 1500 |
| SinI | GGWCC | 2 cut(s) | 762, 1075 |
| SmlI | CTYRAG | 2 cut(s) | 497, 1300 |
| SmoI | CTYRAG | 2 cut(s) | 497, 1300 |
| SpeI | ACTAGT | 1 cut(s) | 1688 |
| Sse9I | AATT | 7 cut(s) | 190, 198, 510, 591, 630, 1012, 1678 |
| SsiI | CCGC | 6 cut(s) | 98, 210, 242, 284, 332, 535 |
| SspMI | CTAG | 1 cut(s) | 1689 |
| TaaI | ACNGT | 3 cut(s) | 169, 980, 1002 |
| TaiI | ACGT | 2 cut(s) | 702, 864 |
| TasI | AATT | 7 cut(s) | 190, 198, 510, 591, 630, 1012, 1678 |
| TatI | WGTACW | 2 cut(s) | 152, 683 |
| TauI | GCSGC | 1 cut(s) | 101 |
| TfiI | GAWTC | 1 cut(s) | 159 |
| Tru1I | TTAA | 7 cut(s) | 264, 291, 777, 815, 854, 1203, 1713 |
| Tru9I | TTAA | 7 cut(s) | 264, 291, 777, 815, 854, 1203, 1713 |
| TscAI | CASTG | 2 cut(s) | 966, 1518 |
| TseFI | GTSAC | 2 cut(s) | 725, 1707 |
| TseI | GCWGC | 4 cut(s) | 51, 578, 1226, 1243 |
| Tsp45I | GTSAC | 2 cut(s) | 725, 1707 |
| TspDTI | ATGAA | 5 cut(s) | 294, 330, 1095, 1146, 1538 |
| TspRI | CASTG | 2 cut(s) | 966, 1518 |
| Tth111I | GACNNNGTC | 2 cut(s) | 358, 1295 |
| VpaK11BI | GGWCC | 2 cut(s) | 762, 1075 |
| XapI | RAATTY | 3 cut(s) | 190, 630, 1678 |
| XceI | RCATGY | 1 cut(s) | 684 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 319, 1065 |
| XmiI | GTMKAC | 3 cut(s) | 15, 669, 771 |
| XmnI | GAANNNNTTC | 2 cut(s) | 85, 1137 |
| XspI | CTAG | 1 cut(s) | 1689 |
| ZrmI | AGTACT | 1 cut(s) | 154 |
| Zsp2I | ATGCAT | 1 cut(s) | 682 |