Rorug01G0116700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000269
Physical Location & Seq
Reverse (-)
20470515 .. 20471410
896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0116700.1

Sequence Viewer

Length: 372 bp
ATGATTGCATGTGCGGTGGTGAAGAACAAGGAGTGCAAGGAGGAACAGCACGGCGGTGTTCAAGGTCGCCGAGAGCGGAATAGCCCTCGGGAAATAGGGCCTAGAGAAGAAGAGAACGTGGGATCGATCCACCACCAGCACCACCACCATGACAGCGATTTGGACTCGAACAGTCCGTCCAGCTTTACCAGTAGTGTGTTGGGCGGCCACGATTCAGAGACTTTCACTGGCTCCAGCAGCAGCAGTAGCACCAGCGTTGACTGTTGCTCCGGTAATATTACCGAGGAGGATGAGGATGAGGATGATGGCTGCACAAGTATACTTACTTCATCAACTGAAATATCACTAGTATGTGGAATGGAATGCACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

123

Amino Acids

13.2

Weight (kDa)

4.6

Isoelectric Point (pI)

87.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 76
AccI GTMKAC 1 cut(s) 319
AciI CCGC 4 cut(s) 14, 54, 76, 204
AclWI GGATC 2 cut(s) 121, 130
AcoI YGGCCR 1 cut(s) 205
AgsI TTSAA 1 cut(s) 62
AhlI ACTAGT 1 cut(s) 346
AleI CACNNNNGTG 1 cut(s) 54
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 121, 130
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 2 cut(s) 98, 205
ApeKI GCWGC 3 cut(s) 237, 240, 309
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 87
BarI GAAGNNNNNNTAC 2 cut(s) 310, 342
BbvI GCAGC 3 cut(s) 249, 252, 296
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 212
BcuI ACTAGT 1 cut(s) 346
BfaI CTAG 2 cut(s) 102, 347
BisI GCNGC 4 cut(s) 205, 238, 241, 310
BlsI GCNGC 4 cut(s) 206, 239, 242, 311
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 217
Bsa29I ATCGAT 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 86, 282
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bse1I ACTGG 2 cut(s) 189, 232
BseCI ATCGAT 1 cut(s) 125
BseDI CCNNGG 2 cut(s) 86, 282
BseGI GGATG 3 cut(s) 295, 301, 307
BseNI ACTGG 2 cut(s) 189, 232
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 249, 252, 296
BsgI GTGCAG 1 cut(s) 295
BshFI GGCC 2 cut(s) 100, 207
BshVI ATCGAT 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 212
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 2 cut(s) 100, 207
BsoBI CYCGRG 1 cut(s) 87
Bsp143I GATC 2 cut(s) 122, 126
BspACI CCGC 4 cut(s) 14, 54, 76, 204
BspANI GGCC 2 cut(s) 100, 207
BspDI ATCGAT 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 2 cut(s) 121, 130
BsrBI CCGCTC 1 cut(s) 76
BsrI ACTGG 2 cut(s) 189, 232
BssECI CCNNGG 2 cut(s) 86, 282
BssMI GATC 2 cut(s) 122, 126
BssNAI GTATAC 1 cut(s) 320
Bst1107I GTATAC 1 cut(s) 320
Bst4CI ACNGT 2 cut(s) 173, 263
Bst6I CTCTTC 1 cut(s) 105
BstF5I GGATG 3 cut(s) 295, 301, 307
BstKTI GATC 2 cut(s) 125, 129
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 122, 126
BstMWI GCNNNNNNNGC 2 cut(s) 237, 246
BstNSI RCATGY 1 cut(s) 12
BstV1I GCAGC 3 cut(s) 249, 252, 296
BstZ17I GTATAC 1 cut(s) 320
Bsu15I ATCGAT 1 cut(s) 125
BsuRI GGCC 2 cut(s) 100, 207
BsuTUI ATCGAT 1 cut(s) 125
BtsCI GGATG 3 cut(s) 295, 301, 307
BtsIMutI CAGTG 1 cut(s) 225
Cfr13I GGNCC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 125
CviAII CATG 2 cut(s) 9, 149
CviJI RGCY 6 cut(s) 84, 100, 183, 207, 231, 309
CviKI_1 RGCY 6 cut(s) 84, 100, 183, 207, 231, 309
DpnI GATC 2 cut(s) 124, 128
DpnII GATC 2 cut(s) 122, 126
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 98
FaeI CATG 2 cut(s) 12, 152
FaiI YATR 4 cut(s) 10, 150, 320, 352
FatI CATG 2 cut(s) 8, 148
FblI GTMKAC 1 cut(s) 319
Fnu4HI GCNGC 4 cut(s) 205, 238, 241, 310
FokI GGATG 3 cut(s) 302, 308, 314
Fsp4HI GCNGC 4 cut(s) 205, 238, 241, 310
FspBI CTAG 2 cut(s) 102, 347
GluI GCNGC 4 cut(s) 205, 238, 241, 310
GsuI CTGGAG 1 cut(s) 217
HaeIII GGCC 2 cut(s) 100, 207
HapII CCGG 1 cut(s) 270
Hin1II CATG 2 cut(s) 12, 152
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 2 cut(s) 164, 212
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 2 cut(s) 259, 320
Hpy188I TCNGA 1 cut(s) 217
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 2 cut(s) 259, 320
HpyCH4III ACNGT 2 cut(s) 173, 263
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 4 cut(s) 8, 36, 312, 366
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 246
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 2 cut(s) 12, 152
Kzo9I GATC 2 cut(s) 122, 126
LmnI GCTCC 2 cut(s) 236, 272
LpnPI CCDG 7 cut(s) 149, 193, 202, 213, 247, 265, 283
Lsp1109I GCAGC 3 cut(s) 249, 252, 296
MaeI CTAG 2 cut(s) 102, 347
MaeII ACGT 1 cut(s) 117
MalI GATC 2 cut(s) 124, 128
MbiI CCGCTC 1 cut(s) 76
MboI GATC 2 cut(s) 122, 126
MboII GAAGA 3 cut(s) 34, 119, 122
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 6 cut(s) 34, 96, 277, 280, 286, 292
MslI CAYNNNNRTG 3 cut(s) 54, 147, 349
MspI CCGG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 237, 246
NdeII GATC 2 cut(s) 122, 126
NlaIII CATG 2 cut(s) 12, 152
NlaIV GGNNCC 1 cut(s) 232
NmeAIII GCCGAG 1 cut(s) 95
NspI RCATGY 1 cut(s) 12
OliI CACNNNNGTG 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 4 cut(s) 206, 239, 242, 311
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 98
RseI CAYNNNNRTG 3 cut(s) 54, 147, 349
SatI GCNGC 4 cut(s) 205, 238, 241, 310
Sau3AI GATC 2 cut(s) 122, 126
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 1 cut(s) 158
SetI ASST 3 cut(s) 67, 120, 185
SmiMI CAYNNNNRTG 3 cut(s) 54, 147, 349
SpeI ACTAGT 1 cut(s) 346
SsiI CCGC 4 cut(s) 14, 54, 76, 204
SspI AATATT 1 cut(s) 277
SspMI CTAG 2 cut(s) 102, 347
TaaI ACNGT 2 cut(s) 173, 263
TaiI ACGT 1 cut(s) 120
TaqI TCGA 2 cut(s) 125, 167
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 212
TscAI CASTG 1 cut(s) 232
TseI GCWGC 3 cut(s) 237, 240, 309
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 1 cut(s) 232
XceI RCATGY 1 cut(s) 12
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 319
XspI CTAG 2 cut(s) 102, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.