Rh7DG220000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000269
Physical Location & Seq
Forward (+)
21369961 .. 21370335
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG220000.1

Sequence Viewer

Length: 285 bp
ATGCAGTGTTATGGATCTGAGTGGTGGCATCAGTTTAACTCAGAAGAGGTACGCATGGACTTAACCATTGAATTGGTAAGGAACAAATTCAATGAGTGCTGGAAATGGATCAATGAAGCCATCAAAACTCGGCCACCACCAATATGTTCTACACCTAAGACGGCACAAAGGGAAACTAAAGCAGCACCGAAGAAAGGGACCGTGAAGAACCCAATCGTCCGACCACCTCGCACTAGAGCTCAATCCAAGAGGGGTGTGGCATCAAATGTCCGTCGTAGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

11.01

Weight (kDa)

10.53

Isoelectric Point (pI)

58.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 270
Acc36I ACCTGC 1 cut(s) 270
AclWI GGATC 2 cut(s) 22, 116
AcoI YGGCCR 1 cut(s) 131
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 2 cut(s) 71, 91
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw21I GWGCWC 1 cut(s) 241
AlwI GGATC 2 cut(s) 22, 116
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 198
AvaII GGWCC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 177
BfaI CTAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 270
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 2 cut(s) 37, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 9, 54
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 241
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 211
BsnI GGCC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 2 cut(s) 14, 108
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 2 cut(s) 10, 53
BspLI GGNNCC 1 cut(s) 199
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 2 cut(s) 22, 116
BssMI GATC 2 cut(s) 14, 108
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 18, 40, 156
BstKTI GATC 2 cut(s) 17, 111
BstMBI GATC 2 cut(s) 14, 108
BstV1I GCAGC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 73
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 55
CviJI RGCY 3 cut(s) 119, 133, 239
CviKI_1 RGCY 3 cut(s) 119, 133, 239
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 3 cut(s) 18, 40, 156
DpnI GATC 2 cut(s) 16, 110
DpnII GATC 2 cut(s) 14, 108
EaeI YGGCCR 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 1 cut(s) 58
FaiI YATR 3 cut(s) 12, 56, 145
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 183
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 234
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 1 cut(s) 133
Hin1II CATG 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 19, 43, 221
Hpy99I CGWCG 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 3 cut(s) 18, 40, 156
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 2 cut(s) 14, 108
LpnPI CCDG 2 cut(s) 85, 265
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 37, 269
MaeI CTAG 1 cut(s) 234
MalI GATC 2 cut(s) 16, 110
MboI GATC 2 cut(s) 14, 108
MboII GAAGA 3 cut(s) 56, 202, 217
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 2 cut(s) 71, 86
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 3 cut(s) 40, 237, 243
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 2 cut(s) 36, 62
MslI CAYNNNNRTG 1 cut(s) 142
NdeII GATC 2 cut(s) 14, 108
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 109
PaqCI CACCTGC 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 142
SacI GAGCTC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 36, 62
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 2 cut(s) 14, 108
Sau96I GGNCC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 241
SetI ASST 5 cut(s) 51, 157, 229, 241, 284
SfaNI GCATC 2 cut(s) 37, 269
SgeI CNNG 7 cut(s) 67, 112, 141, 214, 240, 246, 259
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 142
Sse9I AATT 2 cut(s) 71, 86
SspMI CTAG 1 cut(s) 234
SstI GAGCTC 1 cut(s) 241
TaaI ACNGT 1 cut(s) 202
TasI AATT 2 cut(s) 71, 86
Tru1I TTAA 2 cut(s) 36, 62
Tru9I TTAA 2 cut(s) 36, 62
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 198
XapI RAATTY 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.