FvH4_2g07612

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000269
Physical Location & Seq
Reverse (-)
6515417 .. 6516151
735 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07612.t1

Sequence Viewer

Length: 558 bp
ATGAGATGTTCAACAAACACTACATTCATACCGTTGGAACAGATTTTCATACCAGTCCATGATTCGGATCACTATTTCTTGTTCGTTGTGCGATTGGATACTGAAGAAGCAGAATATTGGGATAGCATGCATGACACAAATAGTAGGAGGAACAAGTGCAAGGCAATTCTGCAAGCACTGGACCATATTTACCGCAACAATGTATTTGTGACATCAAAGAAGAAGAAGTTTACAGAATTCAGGTTGGTGGACCGGATGGAGGCCAAACAATCCGATGCTGATTGTGCTATTTTTGTGATCCGACACATGCAGCGTTATAGTGAGAAGTGGTGGCGTAATTTCAAATCAGAAGAGACTCGTATTGAAATGCTGCTTTATATGATAAAAAGCAAGTACAATAGCCTCTTGAGAATGGTTTTACAAGAGACAGTGAAGAAGGAGGATACAAAGGAGGATAACTTGGAAAAGGAGGCAAGAATGAGGAAGGTTGAAGGAAAACAAAACACCAGGGCTCGGTCTAAGAAGGGTGTGAACAAAGATGTACGTCGCAGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

186

Amino Acids

22.39

Weight (kDa)

9.53

Isoelectric Point (pI)

52.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AclWI GGATC 2 cut(s) 75, 292
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 2 cut(s) 395, 543
AfiI CCNNNNNNNGG 3 cut(s) 64, 259, 513
AgsI TTSAA 4 cut(s) 12, 343, 365, 491
AjnI CCWGG 1 cut(s) 506
Alw26I GTCTC 2 cut(s) 347, 419
AlwI GGATC 2 cut(s) 75, 292
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 3 cut(s) 310, 370, 549
ApoI RAATTY 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 181, 250
AvaII GGWCC 2 cut(s) 181, 250
BanII GRGCYC 1 cut(s) 514
BbvI GCAGC 2 cut(s) 322, 357
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 508
BciVI GTATCC 2 cut(s) 91, 436
BcoDI GTCTC 2 cut(s) 347, 419
BfuI GTATCC 2 cut(s) 91, 436
BisI GCNGC 3 cut(s) 311, 371, 550
BlsI GCNGC 3 cut(s) 312, 372, 551
Bme1390I CCNGG 1 cut(s) 508
Bme18I GGWCC 2 cut(s) 181, 250
BmgT120I GGNCC 2 cut(s) 181, 250
BmrFI CCNGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 265
BpuEI CTTGAG 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 507
BsaWI WCCGGW 1 cut(s) 252
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 259, 513
Bse1I ACTGG 2 cut(s) 53, 183
Bse8I GATNNNNATC 1 cut(s) 66
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 1 cut(s) 261
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 3 cut(s) 64, 259, 513
BseNI ACTGG 2 cut(s) 53, 183
BseXI GCAGC 2 cut(s) 322, 357
BshFI GGCC 1 cut(s) 263
BsiSI CCGG 1 cut(s) 253
BslI CCNNNNNNNGG 3 cut(s) 64, 259, 513
BsmAI GTCTC 2 cut(s) 347, 419
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 2 cut(s) 67, 297
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 263
BspPI GGATC 2 cut(s) 75, 292
BsrI ACTGG 2 cut(s) 53, 183
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 2 cut(s) 67, 297
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 2 cut(s) 33, 430
Bst6I CTCTTC 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 128, 174
BstDEI CTNAG 1 cut(s) 519
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 2 cut(s) 70, 300
BstMAI GTCTC 2 cut(s) 347, 419
BstMBI GATC 2 cut(s) 67, 297
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 1 cut(s) 508
BstNSI RCATGY 2 cut(s) 130, 310
BstSCI CCNGG 1 cut(s) 506
BstV1I GCAGC 2 cut(s) 322, 357
BsuI GTATCC 2 cut(s) 91, 436
BsuRI GGCC 1 cut(s) 263
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 176, 435
Cac8I GCNNGC 2 cut(s) 128, 174
Cfr13I GGNCC 2 cut(s) 181, 250
Csp6I GTAC 2 cut(s) 394, 542
CviAII CATG 4 cut(s) 59, 127, 131, 307
CviJI RGCY 4 cut(s) 263, 402, 512, 552
CviKI_1 RGCY 4 cut(s) 263, 402, 512, 552
CviQI GTAC 2 cut(s) 394, 542
DdeI CTNAG 1 cut(s) 519
DpnI GATC 2 cut(s) 69, 299
DpnII GATC 2 cut(s) 67, 297
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco24I GRGCYC 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 181, 250
Eco57I CTGAAG 1 cut(s) 123
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 506
EcoT22I ATGCAT 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 514
FaeI CATG 4 cut(s) 62, 130, 134, 310
FatI CATG 4 cut(s) 58, 126, 130, 306
Fnu4HI GCNGC 3 cut(s) 311, 371, 550
FokI GGATG 1 cut(s) 268
FriOI GRGCYC 1 cut(s) 514
Fsp4HI GCNGC 3 cut(s) 311, 371, 550
GluI GCNGC 3 cut(s) 311, 371, 550
HaeIII GGCC 1 cut(s) 263
HapII CCGG 1 cut(s) 253
Hin1II CATG 4 cut(s) 62, 130, 134, 310
HinfI GANTC 2 cut(s) 62, 355
HpaII CCGG 1 cut(s) 253
Hpy166II GTNNAC 3 cut(s) 231, 250, 532
Hpy188I TCNGA 4 cut(s) 67, 274, 302, 349
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 3 cut(s) 231, 250, 532
Hpy99I CGWCG 1 cut(s) 549
HpyAV CCTTC 4 cut(s) 430, 478, 485, 517
HpyCH4III ACNGT 2 cut(s) 33, 430
HpyCH4IV ACGT 1 cut(s) 544
HpyCH4V TGCA 4 cut(s) 130, 159, 172, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 519
HpySE526I ACGT 1 cut(s) 544
Hsp92II CATG 4 cut(s) 62, 130, 134, 310
Kzo9I GATC 2 cut(s) 67, 297
LpnPI CCDG 6 cut(s) 66, 164, 226, 266, 493, 520
Lsp1109I GCAGC 2 cut(s) 322, 357
LweI GCATC 1 cut(s) 265
MaeII ACGT 1 cut(s) 544
MaeIII GTNAC 1 cut(s) 208
MalI GATC 2 cut(s) 69, 299
MboI GATC 2 cut(s) 67, 297
MboII GAAGA 5 cut(s) 116, 232, 235, 362, 445
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 3 cut(s) 165, 236, 337
MlyI GAGTC 1 cut(s) 349
MmeI TCCRAC 2 cut(s) 15, 325
MnlI CCTC 7 cut(s) 141, 253, 413, 433, 445, 463, 474
Mph1103I ATGCAT 1 cut(s) 132
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 508
MvaI CCWGG 1 cut(s) 508
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 2 cut(s) 67, 297
NlaIII CATG 4 cut(s) 62, 130, 134, 310
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 132
NspI RCATGY 2 cut(s) 130, 310
PaeI GCATGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 3 cut(s) 312, 372, 551
PleI GAGTC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 506
PspPI GGNCC 2 cut(s) 181, 250
RsaI GTAC 2 cut(s) 395, 543
RsaNI GTAC 2 cut(s) 394, 542
SatI GCNGC 3 cut(s) 311, 371, 550
Sau3AI GATC 2 cut(s) 67, 297
Sau96I GGNCC 2 cut(s) 181, 250
SchI GAGTC 1 cut(s) 349
ScrFI CCNGG 1 cut(s) 508
SduI GDGCHC 1 cut(s) 514
SetI ASST 3 cut(s) 245, 489, 547
SfaNI GCATC 1 cut(s) 265
SinI GGWCC 2 cut(s) 181, 250
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SphI GCATGC 1 cut(s) 130
Sse9I AATT 3 cut(s) 165, 236, 337
SsiI CCGC 1 cut(s) 193
SspI AATATT 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 506
TaaI ACNGT 2 cut(s) 33, 430
TaiI ACGT 1 cut(s) 547
TaqII GACCGA 1 cut(s) 504
TasI AATT 3 cut(s) 165, 236, 337
TatI WGTACW 1 cut(s) 393
TfiI GAWTC 1 cut(s) 62
TscAI CASTG 2 cut(s) 183, 435
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 3 cut(s) 310, 370, 549
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 16, 37
TspRI CASTG 2 cut(s) 183, 435
VpaK11BI GGWCC 2 cut(s) 181, 250
XapI RAATTY 1 cut(s) 236
XceI RCATGY 2 cut(s) 130, 310
Zsp2I ATGCAT 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.