FvH4_4g08649

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
9169018 .. 9170187
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08649.t1

Sequence Viewer

Length: 519 bp
ATGGCTCACAAAGTCAGAGTCAATGCCGATAGAGAAGAGACTGACAAGAGACTTGTCCTCTTTGTTTATGACATAGAGACGGACTTGCAACTGAGCGAAACCATCGTTGATAGTGCTAGTGGCTGCATCTTTACCACATGTGAGGACACTCCGACCGGAAAGTGCAGTAAAGAGTTATCTTCAAGACATGTTGTCAATGGTGTAAGTTTGAAGGAGTTAGGTGTGAGAAGATTTTACAATGACATTCCTACATGCAAAAAGCTCCAAGGACTTGACATGATTTACAGAAGTGTGAAATTCACTACGAAACCCTTCGGGCCGGAGGCAAAAAAGTTTGCAGACTTCACCCTCGATGAGCCAGCTCATTCCCCAAAACAGGAGGGTGGAGCTGATTGTGGGATTTTTACAATCAAACACATGCAGAACTATGGATCAGAGTGGTGGCATAAGTTTGATTCGCACACTATTCGCATGGAATTAACCATTGACTTGGTGAGGAGCAAATTCAACAAGTGCTAG

Protein Analysis

173

Amino Acids

19.64

Weight (kDa)

7.0

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 439
AcsI RAATTY 2 cut(s) 296, 503
AfiI CCNNNNNNNGG 1 cut(s) 376
AflIII ACRYGT 2 cut(s) 137, 187
AgsI TTSAA 3 cut(s) 183, 211, 508
AhdI GACNNNNNGTC 1 cut(s) 191
AluBI AGCT 3 cut(s) 262, 362, 389
AluI AGCT 3 cut(s) 262, 362, 389
Alw26I GTCTC 3 cut(s) 32, 43, 71
AlwI GGATC 1 cut(s) 439
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 2 cut(s) 296, 503
ArsI GACNNNNNNTTYG 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 337, 505
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 110
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BcoDI GTCTC 3 cut(s) 32, 43, 71
BfaI CTAG 2 cut(s) 117, 517
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
BmeRI GACNNNNNGTC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 317
BmsI GCATC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 265
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 511
BseXI GCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 184
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 156
BsiSI CCGG 2 cut(s) 156, 320
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 3 cut(s) 32, 43, 71
BsmBI CGTCTC 1 cut(s) 71
BsnI GGCC 1 cut(s) 319
Bsp143I GATC 1 cut(s) 431
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 84
BspPI GGATC 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 1 cut(s) 431
BssT1I CCWWGG 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 92
BstKTI GATC 1 cut(s) 434
BstMAI GTCTC 3 cut(s) 32, 43, 71
BstMBI GATC 1 cut(s) 431
BstMCI CGRYCG 1 cut(s) 156
BstNSI RCATGY 4 cut(s) 141, 191, 255, 421
BstV1I GCAGC 1 cut(s) 110
BstXI CCANNNNNNTGG 1 cut(s) 490
BsuRI GGCC 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 317
CviAII CATG 6 cut(s) 138, 188, 252, 277, 418, 472
CviJI RGCY 7 cut(s) 5, 123, 262, 319, 358, 362, 389
CviKI_1 RGCY 7 cut(s) 5, 123, 262, 319, 358, 362, 389
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 433
DpnII GATC 1 cut(s) 431
DriI GACNNNNNGTC 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 30
Eam1105I GACNNNNNGTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 6 cut(s) 141, 191, 255, 280, 421, 475
FatI CATG 6 cut(s) 137, 187, 251, 276, 417, 471
Fnu4HI GCNGC 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 2 cut(s) 117, 517
GluI GCNGC 1 cut(s) 124
HaeIII GGCC 1 cut(s) 319
HapII CCGG 2 cut(s) 156, 320
Hin1II CATG 6 cut(s) 141, 191, 255, 280, 421, 475
HinfI GANTC 2 cut(s) 18, 455
HpaII CCGG 2 cut(s) 156, 320
HphI GGTGA 2 cut(s) 337, 505
Hpy188I TCNGA 3 cut(s) 17, 153, 436
Hpy188III TCNNGA 1 cut(s) 183
HpyAV CCTTC 2 cut(s) 205, 322
HpyCH4V TGCA 6 cut(s) 88, 126, 165, 255, 338, 421
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 6 cut(s) 141, 191, 255, 280, 421, 475
Kzo9I GATC 1 cut(s) 431
LmnI GCTCC 3 cut(s) 267, 386, 498
LpnPI CCDG 4 cut(s) 169, 333, 362, 372
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 1 cut(s) 135
MaeI CTAG 2 cut(s) 117, 517
MalI GATC 1 cut(s) 433
MboI GATC 1 cut(s) 431
MboII GAAGA 3 cut(s) 47, 171, 240
MluCI AATT 3 cut(s) 296, 476, 503
MlyI GAGTC 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 6 cut(s) 68, 136, 316, 359, 373, 489
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 1 cut(s) 479
MspI CCGG 2 cut(s) 156, 320
NdeII GATC 1 cut(s) 431
NlaIII CATG 6 cut(s) 141, 191, 255, 280, 421, 475
NspI RCATGY 4 cut(s) 141, 191, 255, 421
PciI ACATGT 2 cut(s) 137, 187
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 455
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PscI ACATGT 2 cut(s) 137, 187
PspPI GGNCC 1 cut(s) 317
SaqAI TTAA 1 cut(s) 479
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 1 cut(s) 431
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 27
SetI ASST 4 cut(s) 223, 264, 364, 391
SfaNI GCATC 1 cut(s) 135
Sse9I AATT 3 cut(s) 296, 476, 503
SspMI CTAG 2 cut(s) 117, 517
StyI CCWWGG 1 cut(s) 265
TaqI TCGA 1 cut(s) 351
TasI AATT 3 cut(s) 296, 476, 503
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 1 cut(s) 479
Tru9I TTAA 1 cut(s) 479
TseI GCWGC 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 95
XapI RAATTY 2 cut(s) 296, 503
XceI RCATGY 4 cut(s) 141, 191, 255, 421
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 2 cut(s) 117, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.