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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2211 |
| Acc16I | TGCGCA | 1 cut(s) | 1994 |
| Acc36I | ACCTGC | 1 cut(s) | 2211 |
| Acc65I | GGTACC | 2 cut(s) | 277, 1782 |
| AccB1I | GGYRCC | 4 cut(s) | 28, 74, 277, 1782 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1825 |
| AccI | GTMKAC | 2 cut(s) | 15, 591 |
| AciI | CCGC | 5 cut(s) | 5, 98, 234, 266, 457 |
| AclWI | GGATC | 2 cut(s) | 1963, 2057 |
| AcoI | YGGCCR | 1 cut(s) | 2072 |
| AcsI | RAATTY | 6 cut(s) | 214, 552, 743, 1483, 1749, 2027 |
| AcuI | CTGAAG | 5 cut(s) | 168, 372, 445, 935, 1473 |
| AdeI | CACNNNGTG | 1 cut(s) | 1825 |
| AfaI | GTAC | 6 cut(s) | 154, 279, 607, 1097, 1242, 1784 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1126, 1825, 2135 |
| AflIII | ACRYGT | 1 cut(s) | 1656 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1006 |
| AhlI | ACTAGT | 1 cut(s) | 1493 |
| AjiI | CACGTC | 1 cut(s) | 784 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1492, 1524 |
| AluBI | AGCT | 9 cut(s) | 54, 117, 245, 343, 350, 936, 1109, 1451, 2180 |
| AluI | AGCT | 9 cut(s) | 54, 117, 245, 343, 350, 936, 1109, 1451, 2180 |
| Alw21I | GWGCWC | 3 cut(s) | 860, 1428, 2182 |
| Alw26I | GTCTC | 2 cut(s) | 1457, 1647 |
| AlwI | GGATC | 2 cut(s) | 1963, 2057 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 404 |
| AoxI | GGCC | 6 cut(s) | 99, 139, 909, 978, 1224, 2072 |
| ApeKI | GCWGC | 4 cut(s) | 51, 114, 500, 2123 |
| ApoI | RAATTY | 6 cut(s) | 214, 552, 743, 1483, 1749, 2027 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 85, 309, 1179, 2027 |
| Asp718I | GGTACC | 2 cut(s) | 277, 1782 |
| AspLEI | GCGC | 2 cut(s) | 834, 1995 |
| AspS9I | GGNCC | 6 cut(s) | 100, 140, 684, 910, 1117, 2139 |
| AsuHPI | GGTGA | 4 cut(s) | 548, 710, 1159, 1211 |
| AsuII | TTCGAA | 1 cut(s) | 1685 |
| AvaII | GGWCC | 3 cut(s) | 684, 1117, 2139 |
| BaeGI | GKGCMC | 1 cut(s) | 79 |
| BanI | GGYRCC | 4 cut(s) | 28, 74, 277, 1782 |
| BanII | GRGCYC | 1 cut(s) | 2182 |
| BbsI | GAAGAC | 2 cut(s) | 1079, 1277 |
| Bbv12I | GWGCWC | 3 cut(s) | 860, 1428, 2182 |
| BbvI | GCAGC | 4 cut(s) | 63, 126, 512, 2135 |
| BccI | CCATC | 9 cut(s) | 62, 128, 658, 724, 793, 869, 989, 1524, 2069 |
| BciVI | GTATCC | 1 cut(s) | 796 |
| BclI | TGATCA | 2 cut(s) | 715, 1932 |
| BcoDI | GTCTC | 2 cut(s) | 1457, 1647 |
| BcuI | ACTAGT | 1 cut(s) | 1493 |
| BfaI | CTAG | 4 cut(s) | 1494, 1577, 1674, 2175 |
| BfmI | CTRYAG | 1 cut(s) | 1305 |
| BfoI | RGCGCY | 1 cut(s) | 835 |
| BfuAI | ACCTGC | 1 cut(s) | 2211 |
| BfuI | GTATCC | 1 cut(s) | 796 |
| BisI | GCNGC | 6 cut(s) | 5, 52, 99, 115, 501, 2124 |
| BlsI | GCNGC | 6 cut(s) | 6, 53, 100, 116, 502, 2125 |
| BmcAI | AGTACT | 1 cut(s) | 154 |
| Bme18I | GGWCC | 3 cut(s) | 684, 1117, 2139 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1006 |
| BmgBI | CACGTC | 1 cut(s) | 784 |
| BmgT120I | GGNCC | 6 cut(s) | 100, 140, 684, 910, 1117, 2139 |
| BmrI | ACTGGG | 2 cut(s) | 955, 1094 |
| BmsI | GCATC | 5 cut(s) | 185, 631, 1330, 1978, 2210 |
| BmuI | ACTGGG | 2 cut(s) | 955, 1094 |
| BpiI | GAAGAC | 2 cut(s) | 1079, 1277 |
| BpmI | CTGGAG | 2 cut(s) | 40, 435 |
| Bpu10I | CCTNAGC | 2 cut(s) | 866, 1427 |
| Bpu14I | TTCGAA | 1 cut(s) | 1685 |
| BpuEI | CTTGAG | 1 cut(s) | 440 |
| Bsa29I | ATCGAT | 1 cut(s) | 382 |
| BsaI | GGTCTC | 1 cut(s) | 1457 |
| BsaJI | CCNNGG | 1 cut(s) | 687 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1126, 1825, 2135 |
| Bse118I | RCCGGY | 1 cut(s) | 1882 |
| Bse1I | ACTGG | 4 cut(s) | 57, 950, 1100, 1809 |
| BseCI | ATCGAT | 1 cut(s) | 382 |
| BseDI | CCNNGG | 1 cut(s) | 687 |
| BseGI | GGATG | 4 cut(s) | 646, 861, 1177, 1535 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1126, 1825, 2135 |
| BseMII | CTCAG | 6 cut(s) | 396, 714, 1019, 1441, 1950, 1995 |
| BseNI | ACTGG | 4 cut(s) | 57, 950, 1100, 1809 |
| BseRI | GAGGAG | 1 cut(s) | 157 |
| BseSI | GKGCMC | 1 cut(s) | 79 |
| BseXI | GCAGC | 4 cut(s) | 63, 126, 512, 2135 |
| BseYI | CCCAGC | 1 cut(s) | 680 |
| BsgI | GTGCAG | 1 cut(s) | 806 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1717 |
| BshFI | GGCC | 6 cut(s) | 101, 141, 911, 980, 1226, 2074 |
| BshNI | GGYRCC | 4 cut(s) | 28, 74, 277, 1782 |
| BshVI | ATCGAT | 1 cut(s) | 382 |
| BsiEI | CGRYCG | 1 cut(s) | 1717 |
| BsiHKAI | GWGCWC | 3 cut(s) | 860, 1428, 2182 |
| BsiSI | CCGG | 1 cut(s) | 1883 |
| BslFI | GGGAC | 3 cut(s) | 794, 1130, 2152 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1126, 1825, 2135 |
| BsmAI | GTCTC | 2 cut(s) | 1457, 1647 |
| BsmFI | GGGAC | 3 cut(s) | 794, 1130, 2152 |
| BsmI | GAATGC | 1 cut(s) | 682 |
| BsnI | GGCC | 6 cut(s) | 101, 141, 911, 980, 1226, 2074 |
| Bso31I | GGTCTC | 1 cut(s) | 1457 |
| Bsp119I | TTCGAA | 1 cut(s) | 1685 |
| Bsp1286I | GDGCHC | 4 cut(s) | 79, 860, 1428, 2182 |
| BspACI | CCGC | 5 cut(s) | 5, 98, 234, 266, 457 |
| BspANI | GGCC | 6 cut(s) | 101, 141, 911, 980, 1226, 2074 |
| BspCNI | CTCAG | 6 cut(s) | 397, 715, 1018, 1440, 1951, 1994 |
| BspDI | ATCGAT | 1 cut(s) | 382 |
| BspMI | ACCTGC | 1 cut(s) | 2211 |
| BspPI | GGATC | 2 cut(s) | 1963, 2057 |
| BspT104I | TTCGAA | 1 cut(s) | 1685 |
| BspT107I | GGYRCC | 4 cut(s) | 28, 74, 277, 1782 |
| BspTNI | GGTCTC | 1 cut(s) | 1457 |
| BsrFI | RCCGGY | 1 cut(s) | 1882 |
| BsrI | ACTGG | 4 cut(s) | 57, 950, 1100, 1809 |
| BssAI | RCCGGY | 1 cut(s) | 1882 |
| BssECI | CCNNGG | 1 cut(s) | 687 |
| Bst4CI | ACNGT | 4 cut(s) | 193, 1044, 1919, 2143 |
| Bst6I | CTCTTC | 4 cut(s) | 348, 1401, 1449, 1980 |
| BstBI | TTCGAA | 1 cut(s) | 1685 |
| BstC8I | GCNNGC | 2 cut(s) | 909, 1884 |
| BstDEI | CTNAG | 8 cut(s) | 405, 723, 866, 1005, 1427, 1959, 1981, 2097 |
| BstF5I | GGATG | 4 cut(s) | 646, 861, 1177, 1535 |
| BstH2I | RGCGCY | 1 cut(s) | 835 |
| BstHHI | GCGC | 2 cut(s) | 834, 1995 |
| BstMAI | GTCTC | 2 cut(s) | 1457, 1647 |
| BstMCI | CGRYCG | 1 cut(s) | 1717 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 242, 933, 1590 |
| BstNSI | RCATGY | 3 cut(s) | 606, 1660, 1945 |
| BstSFI | CTRYAG | 1 cut(s) | 1305 |
| BstSLI | GKGCMC | 1 cut(s) | 79 |
| BstV1I | GCAGC | 4 cut(s) | 63, 126, 512, 2135 |
| BstV2I | GAAGAC | 2 cut(s) | 1079, 1277 |
| BstX2I | RGATCY | 1 cut(s) | 1955 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 900, 2014 |
| BstYI | RGATCY | 1 cut(s) | 1955 |
| Bsu15I | ATCGAT | 1 cut(s) | 382 |
| BsuI | GTATCC | 1 cut(s) | 796 |
| BsuRI | GGCC | 6 cut(s) | 101, 141, 911, 980, 1226, 2074 |
| BsuTUI | ATCGAT | 1 cut(s) | 382 |
| BtgZI | GCGATG | 1 cut(s) | 501 |
| BtrI | CACGTC | 1 cut(s) | 784 |
| BtsCI | GGATG | 4 cut(s) | 646, 861, 1177, 1535 |
| BtsI | GCAGTG | 1 cut(s) | 1952 |
| BtsIMutI | CAGTG | 4 cut(s) | 881, 1316, 1802, 1952 |
| BveI | ACCTGC | 1 cut(s) | 2211 |
| Cac8I | GCNNGC | 2 cut(s) | 909, 1884 |
| CaiI | CAGNNNCTG | 1 cut(s) | 404 |
| CfoI | GCGC | 2 cut(s) | 834, 1995 |
| Cfr10I | RCCGGY | 1 cut(s) | 1882 |
| Cfr13I | GGNCC | 6 cut(s) | 100, 140, 684, 910, 1117, 2139 |
| ClaI | ATCGAT | 1 cut(s) | 382 |
| CseI | GACGC | 1 cut(s) | 1590 |
| Csp6I | GTAC | 6 cut(s) | 153, 278, 606, 1096, 1241, 1783 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1141, 1176 |
| CviQI | GTAC | 6 cut(s) | 153, 278, 606, 1096, 1241, 1783 |
| DdeI | CTNAG | 8 cut(s) | 405, 723, 866, 1005, 1427, 1959, 1981, 2097 |
| DraI | TTTAAA | 2 cut(s) | 700, 942 |
| DraIII | CACNNNGTG | 1 cut(s) | 1825 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1006 |
| EaeI | YGGCCR | 1 cut(s) | 2072 |
| Eam1104I | CTCTTC | 4 cut(s) | 348, 1401, 1449, 1980 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1006 |
| EarI | CTCTTC | 4 cut(s) | 348, 1401, 1449, 1980 |
| Ecl136II | GAGCTC | 1 cut(s) | 2180 |
| Eco24I | GRGCYC | 1 cut(s) | 2182 |
| Eco31I | GGTCTC | 1 cut(s) | 1457 |
| Eco32I | GATATC | 1 cut(s) | 324 |
| Eco47I | GGWCC | 3 cut(s) | 684, 1117, 2139 |
| Eco53kI | GAGCTC | 1 cut(s) | 2180 |
| Eco57I | CTGAAG | 5 cut(s) | 168, 372, 445, 935, 1473 |
| EcoICRI | GAGCTC | 1 cut(s) | 2180 |
| EcoO109I | RGGNCCY | 1 cut(s) | 140 |
| EcoRV | GATATC | 1 cut(s) | 324 |
| EcoT22I | ATGCAT | 2 cut(s) | 604, 1767 |
| EcoT38I | GRGCYC | 1 cut(s) | 2182 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 402, 434, 1262, 1294 |
| FaqI | GGGAC | 3 cut(s) | 794, 1130, 2152 |
| FauNDI | CATATG | 1 cut(s) | 1234 |
| FbaI | TGATCA | 2 cut(s) | 715, 1932 |
| FblI | GTMKAC | 2 cut(s) | 15, 591 |
| Fnu4HI | GCNGC | 6 cut(s) | 5, 52, 99, 115, 501, 2124 |
| FokI | GGATG | 4 cut(s) | 653, 848, 1184, 1542 |
| FriOI | GRGCYC | 1 cut(s) | 2182 |
| Fsp4HI | GCNGC | 6 cut(s) | 5, 52, 99, 115, 501, 2124 |
| FspAI | RTGCGCAY | 1 cut(s) | 1994 |
| FspBI | CTAG | 4 cut(s) | 1494, 1577, 1674, 2175 |
| FspI | TGCGCA | 1 cut(s) | 1994 |
| GlaI | GCGC | 2 cut(s) | 833, 1994 |
| GluI | GCNGC | 6 cut(s) | 5, 52, 99, 115, 501, 2124 |
| GsaI | CCCAGC | 1 cut(s) | 684 |
| GsuI | CTGGAG | 2 cut(s) | 40, 435 |
| HaeII | RGCGCY | 1 cut(s) | 835 |
| HaeIII | GGCC | 6 cut(s) | 101, 141, 911, 980, 1226, 2074 |
| HapII | CCGG | 1 cut(s) | 1883 |
| HgaI | GACGC | 1 cut(s) | 1590 |
| HhaI | GCGC | 2 cut(s) | 834, 1995 |
| Hin6I | GCGC | 2 cut(s) | 832, 1993 |
| HinP1I | GCGC | 2 cut(s) | 832, 1993 |
| HincII | GTYRAC | 3 cut(s) | 253, 694, 817 |
| HindII | GTYRAC | 3 cut(s) | 253, 694, 817 |
| HindIII | AAGCTT | 2 cut(s) | 243, 1107 |
| HinfI | GANTC | 7 cut(s) | 159, 208, 230, 584, 1001, 1295, 1667 |
| HpaI | GTTAAC | 1 cut(s) | 253 |
| HpaII | CCGG | 1 cut(s) | 1883 |
| HphI | GGTGA | 4 cut(s) | 548, 710, 1159, 1211 |
| Hpy166II | GTNNAC | 9 cut(s) | 16, 253, 583, 592, 694, 817, 849, 1084, 1150 |
| Hpy188III | TCNNGA | 5 cut(s) | 90, 205, 452, 1403, 1712 |
| Hpy8I | GTNNAC | 9 cut(s) | 16, 253, 583, 592, 694, 817, 849, 1084, 1150 |
| Hpy99I | CGWCG | 2 cut(s) | 193, 2217 |
| HpyAV | CCTTC | 7 cut(s) | 4, 19, 540, 751, 910, 1453, 1681 |
| HpyCH4III | ACNGT | 4 cut(s) | 193, 1044, 1919, 2143 |
| HpyCH4IV | ACGT | 1 cut(s) | 783 |
| HpyCH4V | TGCA | 9 cut(s) | 602, 619, 644, 787, 1039, 1258, 1765, 1798, 1945 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 242, 933, 1590 |
| HpyF3I | CTNAG | 8 cut(s) | 405, 723, 866, 1005, 1427, 1959, 1981, 2097 |
| HpySE526I | ACGT | 1 cut(s) | 783 |
| HspAI | GCGC | 2 cut(s) | 832, 1993 |
| KpnI | GGTACC | 2 cut(s) | 281, 1786 |
| KroI | GCCGGC | 1 cut(s) | 1882 |
| KroNI | GCCGGC | 1 cut(s) | 1884 |
| Ksp22I | TGATCA | 2 cut(s) | 715, 1932 |
| KspAI | GTTAAC | 1 cut(s) | 253 |
| LmnI | GCTCC | 2 cut(s) | 59, 122 |
| Lsp1109I | GCAGC | 4 cut(s) | 63, 126, 512, 2135 |
| LweI | GCATC | 5 cut(s) | 185, 631, 1330, 1978, 2210 |
| MaeI | CTAG | 4 cut(s) | 1494, 1577, 1674, 2175 |
| MaeII | ACGT | 1 cut(s) | 783 |
| MfeI | CAATTG | 1 cut(s) | 513 |
| MflI | RGATCY | 1 cut(s) | 1955 |
| MhlI | GDGCHC | 4 cut(s) | 79, 860, 1428, 2182 |
| MlyI | GAGTC | 4 cut(s) | 239, 578, 995, 1289 |
| MmeI | TCCRAC | 1 cut(s) | 2185 |
| Mph1103I | ATGCAT | 2 cut(s) | 604, 1767 |
| MroNI | GCCGGC | 1 cut(s) | 1882 |
| MroXI | GAANNNNTTC | 4 cut(s) | 85, 309, 1179, 2027 |
| MseI | TTAA | 9 cut(s) | 252, 699, 776, 941, 1104, 1518, 1839, 1977, 2003 |
| MslI | CAYNNNNRTG | 3 cut(s) | 964, 1760, 2083 |
| MspA1I | CMGCKG | 2 cut(s) | 350, 1451 |
| MspI | CCGG | 1 cut(s) | 1883 |
| MunI | CAATTG | 1 cut(s) | 513 |
| Mva1269I | GAATGC | 1 cut(s) | 682 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 242, 933, 1590 |
| NaeI | GCCGGC | 1 cut(s) | 1884 |
| NdeI | CATATG | 1 cut(s) | 1234 |
| NgoMIV | GCCGGC | 1 cut(s) | 1882 |
| NmeAIII | GCCGAG | 1 cut(s) | 2050 |
| NmuCI | GTSAC | 3 cut(s) | 373, 647, 1562 |
| NsbI | TGCGCA | 1 cut(s) | 1994 |
| NsiI | ATGCAT | 2 cut(s) | 604, 1767 |
| NspI | RCATGY | 3 cut(s) | 606, 1660, 1945 |
| NspV | TTCGAA | 1 cut(s) | 1685 |
| PaqCI | CACCTGC | 1 cut(s) | 2211 |
| PciI | ACATGT | 1 cut(s) | 1656 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 185 |
| PctI | GAATGC | 1 cut(s) | 682 |
| PdiI | GCCGGC | 1 cut(s) | 1884 |
| PdmI | GAANNNNTTC | 4 cut(s) | 85, 309, 1179, 2027 |
| PfeI | GAWTC | 3 cut(s) | 159, 208, 1667 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1825 |
| PkrI | GCNGC | 6 cut(s) | 6, 53, 100, 116, 502, 2125 |
| Ple19I | CGATCG | 1 cut(s) | 1717 |
| PleI | GAGTC | 4 cut(s) | 238, 578, 995, 1289 |
| PpsI | GAGTC | 4 cut(s) | 238, 578, 995, 1289 |
| PscI | ACATGT | 1 cut(s) | 1656 |
| Psp124BI | GAGCTC | 1 cut(s) | 2182 |
| PspFI | CCCAGC | 1 cut(s) | 680 |
| PspPI | GGNCC | 6 cut(s) | 100, 140, 684, 910, 1117, 2139 |
| PstNI | CAGNNNCTG | 1 cut(s) | 404 |
| PsuI | RGATCY | 1 cut(s) | 1955 |
| PvuI | CGATCG | 1 cut(s) | 1717 |
| PvuII | CAGCTG | 2 cut(s) | 350, 1451 |
| RsaI | GTAC | 6 cut(s) | 154, 279, 607, 1097, 1242, 1784 |
| RsaNI | GTAC | 6 cut(s) | 153, 278, 606, 1096, 1241, 1783 |
| RseI | CAYNNNNRTG | 3 cut(s) | 964, 1760, 2083 |
| SacI | GAGCTC | 1 cut(s) | 2182 |
| SaqAI | TTAA | 9 cut(s) | 252, 699, 776, 941, 1104, 1518, 1839, 1977, 2003 |
| SatI | GCNGC | 6 cut(s) | 5, 52, 99, 115, 501, 2124 |
| Sau96I | GGNCC | 6 cut(s) | 100, 140, 684, 910, 1117, 2139 |
| ScaI | AGTACT | 1 cut(s) | 154 |
| SchI | GAGTC | 4 cut(s) | 239, 578, 995, 1289 |
| SduI | GDGCHC | 4 cut(s) | 79, 860, 1428, 2182 |
| SfaNI | GCATC | 5 cut(s) | 185, 631, 1330, 1978, 2210 |
| SfcI | CTRYAG | 1 cut(s) | 1305 |
| SfuI | TTCGAA | 1 cut(s) | 1685 |
| SinI | GGWCC | 3 cut(s) | 684, 1117, 2139 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 964, 1760, 2083 |
| SmlI | CTYRAG | 1 cut(s) | 419 |
| SmoI | CTYRAG | 1 cut(s) | 419 |
| SpeI | ACTAGT | 1 cut(s) | 1493 |
| SsiI | CCGC | 5 cut(s) | 5, 98, 234, 266, 457 |
| SspMI | CTAG | 4 cut(s) | 1494, 1577, 1674, 2175 |
| SstI | GAGCTC | 1 cut(s) | 2182 |
| TaaI | ACNGT | 4 cut(s) | 193, 1044, 1919, 2143 |
| TaiI | ACGT | 1 cut(s) | 786 |
| TaqI | TCGA | 8 cut(s) | 91, 157, 313, 382, 1498, 1685, 1713, 2052 |
| TatI | WGTACW | 2 cut(s) | 152, 605 |
| TauI | GCSGC | 2 cut(s) | 7, 101 |
| TfiI | GAWTC | 3 cut(s) | 159, 208, 1667 |
| Tru1I | TTAA | 9 cut(s) | 252, 699, 776, 941, 1104, 1518, 1839, 1977, 2003 |
| Tru9I | TTAA | 9 cut(s) | 252, 699, 776, 941, 1104, 1518, 1839, 1977, 2003 |
| TscAI | CASTG | 4 cut(s) | 888, 1323, 1809, 1952 |
| TseFI | GTSAC | 3 cut(s) | 373, 647, 1562 |
| TseI | GCWGC | 4 cut(s) | 51, 114, 500, 2123 |
| Tsp45I | GTSAC | 3 cut(s) | 373, 647, 1562 |
| TspDTI | ATGAA | 8 cut(s) | 318, 736, 1137, 1188, 1343, 1649, 1725, 1744 |
| TspGWI | ACGGA | 3 cut(s) | 577, 636, 2201 |
| TspRI | CASTG | 4 cut(s) | 888, 1323, 1809, 1952 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1825 |
| VpaK11BI | GGWCC | 3 cut(s) | 684, 1117, 2139 |
| XapI | RAATTY | 6 cut(s) | 214, 552, 743, 1483, 1749, 2027 |
| XceI | RCATGY | 3 cut(s) | 606, 1660, 1945 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1107, 2194 |
| XmiI | GTMKAC | 2 cut(s) | 15, 591 |
| XmnI | GAANNNNTTC | 4 cut(s) | 85, 309, 1179, 2027 |
| XspI | CTAG | 4 cut(s) | 1494, 1577, 1674, 2175 |
| ZrmI | AGTACT | 1 cut(s) | 154 |
| Zsp2I | ATGCAT | 2 cut(s) | 604, 1767 |