FvH4_4g08580

Ulp1 protease family, C-terminal catalytic domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000269
Physical Location & Seq
Reverse (-)
8811893 .. 8812714
822 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08580.t1

Sequence Viewer

Length: 561 bp
ATGTGGGTAAAAAGTTACAGTAAATACCTTCCTCATTGCAAAAAGATGTTCATACCAATCCATGACTCAGATAATTGGTATCTCTTTGTTGTGCGTATAGATAACGAGACAGGAGAATACTGGGATAGCCTTGGAGACAAAAAATCACGCAAGGATTACTACAAAGATATTCTGAAAGTCTTTGACATTATTTTCAGCCATCTTGTGAAAAAGACTAAGAAATTTGAAGATTTTCCCATTTTTAAGCCACCACAATGTCCTAAACAAGAGGGTACTGATGACTGCGGGATCTTTACAATCAAACACAAGGAGCAGTATGGTGAAGAGTGGTGGGCCGAGTATAACTCAAAAGAGGTTCGCAAAGAGCTAACCTTGAAATTGATAAGGAACGGATACAACATTAGATGGCAAATGATGTGTAGAAACATCAAAAAAAGATTAAAGAATAAGAAACTGGAAAAAAAGATTGAAGAGCCTCAGAACAATCAAGAGACTGAGCAGCGCGGAAAGAATGTACAAGTCCTGAAGCAAGTGACTCAAAAGAGGTTTGCAAAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

22.65

Weight (kDa)

9.52

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 3 - 104 1.4e-12 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 504
AciI CCGC 2 cut(s) 285, 504
AclWI GGATC 1 cut(s) 296
AcsI RAATTY 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 545
AfaI GTAC 2 cut(s) 274, 516
AgsI TTSAA 3 cut(s) 227, 376, 470
AluBI AGCT 2 cut(s) 367, 558
AluI AGCT 2 cut(s) 367, 558
Alw26I GTCTC 3 cut(s) 101, 129, 485
AlwI GGATC 1 cut(s) 296
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 1 cut(s) 499
ApoI RAATTY 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 332
BbvI GCAGC 1 cut(s) 511
BccI CCATC 2 cut(s) 207, 399
BciVI GTATCC 1 cut(s) 386
BcoDI GTCTC 3 cut(s) 101, 129, 485
BfuI GTATCC 1 cut(s) 386
BisI GCNGC 1 cut(s) 500
BlsI GCNGC 1 cut(s) 501
BmgT120I GGNCC 1 cut(s) 333
BmrI ACTGGG 1 cut(s) 130
BmuI ACTGGG 1 cut(s) 130
BplI GAGNNNNNCTC 2 cut(s) 329, 361
BsaJI CCNNGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 125, 459
Bse3DI GCAATG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 130
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 3 cut(s) 81, 486, 491
BseNI ACTGG 2 cut(s) 125, 459
BseXI GCAGC 1 cut(s) 511
Bsh1236I CGCG 1 cut(s) 504
BshFI GGCC 1 cut(s) 335
BsmAI GTCTC 3 cut(s) 101, 129, 485
BsnI GGCC 1 cut(s) 335
Bsp1407I TGTACA 1 cut(s) 514
Bsp143I GATC 1 cut(s) 288
BspACI CCGC 2 cut(s) 285, 504
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 3 cut(s) 80, 487, 490
BspFNI CGCG 1 cut(s) 504
BspPI GGATC 1 cut(s) 296
BspQI GCTCTTC 1 cut(s) 465
BsrDI GCAATG 1 cut(s) 34
BsrGI TGTACA 1 cut(s) 514
BsrI ACTGG 2 cut(s) 125, 459
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 130
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 2 cut(s) 318, 465
BstAUI TGTACA 1 cut(s) 514
BstDEI CTNAG 4 cut(s) 67, 216, 477, 495
BstFNI CGCG 1 cut(s) 504
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 1 cut(s) 291
BstMAI GTCTC 3 cut(s) 101, 129, 485
BstMBI GATC 1 cut(s) 288
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 1 cut(s) 511
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 1 cut(s) 335
CfoI GCGC 1 cut(s) 504
Cfr13I GGNCC 1 cut(s) 333
Csp6I GTAC 2 cut(s) 273, 515
CviAII CATG 1 cut(s) 62
CviJI RGCY 7 cut(s) 129, 198, 247, 335, 367, 475, 558
CviKI_1 RGCY 7 cut(s) 129, 198, 247, 335, 367, 475, 558
CviQI GTAC 2 cut(s) 273, 515
DdeI CTNAG 4 cut(s) 67, 216, 477, 495
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 318, 465
EarI CTCTTC 2 cut(s) 318, 465
Eco130I CCWWGG 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 545
EcoT14I CCWWGG 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 65
FaiI YATR 5 cut(s) 53, 63, 98, 318, 342
FatI CATG 1 cut(s) 61
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 500
Fsp4HI GCNGC 1 cut(s) 500
GlaI GCGC 1 cut(s) 503
GluI GCNGC 1 cut(s) 500
HaeIII GGCC 1 cut(s) 335
HhaI GCGC 1 cut(s) 504
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HinfI GANTC 2 cut(s) 65, 535
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 3 cut(s) 70, 174, 480
Hpy188III TCNNGA 2 cut(s) 488, 523
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 39, 551
HpyF3I CTNAG 4 cut(s) 67, 216, 477, 495
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 1 cut(s) 502
Kzo9I GATC 1 cut(s) 288
LguI GCTCTTC 1 cut(s) 465
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 4 cut(s) 96, 106, 440, 536
Lsp1109I GCAGC 1 cut(s) 511
MaeIII GTNAC 2 cut(s) 14, 532
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 3 cut(s) 239, 335, 482
MflI RGATCY 1 cut(s) 288
MluCI AATT 3 cut(s) 73, 221, 377
MlyI GAGTC 2 cut(s) 59, 529
MnlI CCTC 5 cut(s) 42, 262, 346, 486, 537
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 2 cut(s) 243, 440
MslI CAYNNNNRTG 1 cut(s) 253
MvnI CGCG 1 cut(s) 504
NdeII GATC 1 cut(s) 288
NlaIII CATG 1 cut(s) 65
NmeAIII GCCGAG 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 465
PdmI GAANNNNTTC 1 cut(s) 231
PkrI GCNGC 1 cut(s) 501
PleI GAGTC 2 cut(s) 59, 529
PpsI GAGTC 2 cut(s) 59, 529
PspPI GGNCC 1 cut(s) 333
PsuI RGATCY 1 cut(s) 288
RsaI GTAC 2 cut(s) 274, 516
RsaNI GTAC 2 cut(s) 273, 515
RseI CAYNNNNRTG 1 cut(s) 253
SapI GCTCTTC 1 cut(s) 465
SaqAI TTAA 2 cut(s) 243, 440
SatI GCNGC 1 cut(s) 500
Sau3AI GATC 1 cut(s) 288
Sau96I GGNCC 1 cut(s) 333
SchI GAGTC 2 cut(s) 59, 529
SetI ASST 6 cut(s) 30, 357, 369, 374, 548, 560
SmiMI CAYNNNNRTG 1 cut(s) 253
Sse9I AATT 3 cut(s) 73, 221, 377
SsiI CCGC 2 cut(s) 285, 504
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 20
TasI AATT 3 cut(s) 73, 221, 377
TatI WGTACW 1 cut(s) 514
Tru1I TTAA 2 cut(s) 243, 440
Tru9I TTAA 2 cut(s) 243, 440
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 1 cut(s) 499
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 405
XapI RAATTY 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.