Rh6AG051000

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
7338461 .. 7339724
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG051000.1

Sequence Viewer

Length: 843 bp
ATGAAGAAAGTTGATGCCAACCCCACGACCAAGAGCAACAAAGAGAAGATTGGTAACTTCAAAGTCAAGGGAGATCGGGAGGAGGCTGACAAAGGAGTGCTCAGGTTTGTTTATGATGTGTTAGCTGAAGAGAAGGATACCATTGTGGATGGTGAAAATTTCTTCACTAGTCGAAGAGTAGTTTGGTCACTTAAACCTAACAGATGGGTTGAAGATGATATTATCAATTTGTTTAGTGACTATCTATTTTTAGGACGCTTCCCAAGCAATAGATGTTGTTACTTCACAACATACTTTTGTCAGAACATGAAAAGTTACAATGACAGAGGCATGTGTGGAGATTCGGCTATGGCAATTTCGAAGGGTTTGGGTGTAAAGAGATTTGAGAAAGGCATACCTGCGTGCGAGAAGTTGCAAACACTAGACATTATCTACCACCATGTGGAGTTCAAAGTCAAGAATGTTGTGAAGAAGTTTGCTGACTTCCATGTATTCGAGCTGGCTCAATGCCCTAAACAAGAGGGCAGTTCTGACTGTGGGGTGTATGTGATCAAACACATGCAGTGTTATGGATCTGAGTGGTGGCATCATTTTAACTCAGAAGAGGTACGCATGGACTTAACCATTGAATTGGTAAGGAACAAATTCAATGAGTGTTGGAAATGGATCAAGGAAGCCATCAAAACTCGGCCACCACCAATATGTTCTACACCTAAGACGGCACAAAGGGAAACTAAAGCAGCACCGAAGAAAGGGACCGTGAAGAACCCAATCGTCCAACCACCTCGCACTAGAGCTCAATCCAAGAGGGATGTGGCATCAAATGTCCGTCGTAACAGGTGA

Protein Analysis

280

Amino Acids

32.52

Weight (kDa)

9.35

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 406
AccB7I CCANNNNNTGG 1 cut(s) 442
AclWI GGATC 2 cut(s) 580, 674
AcoI YGGCCR 1 cut(s) 689
AcsI RAATTY 2 cut(s) 157, 644
AcuI CTGAAG 1 cut(s) 147
AdeI CACNNNGTG 1 cut(s) 442
AfaI GTAC 1 cut(s) 609
AfiI CCNNNNNNNGG 2 cut(s) 442, 752
AgsI TTSAA 5 cut(s) 61, 212, 451, 629, 649
AhlI ACTAGT 1 cut(s) 167
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 3 cut(s) 125, 499, 797
AluI AGCT 3 cut(s) 125, 499, 797
Alw21I GWGCWC 2 cut(s) 102, 799
AlwI GGATC 2 cut(s) 580, 674
AoxI GGCC 1 cut(s) 689
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 2 cut(s) 157, 644
Asp700I GAANNNNTTC 1 cut(s) 644
AspS9I GGNCC 1 cut(s) 756
AsuHPI GGTGA 1 cut(s) 164
AsuII TTCGAA 1 cut(s) 359
AvaII GGWCC 1 cut(s) 756
BaeI ACNNNNGTAYC 2 cut(s) 129, 162
BanII GRGCYC 1 cut(s) 799
Bbv12I GWGCWC 2 cut(s) 102, 799
BbvI GCAGC 1 cut(s) 752
BccI CCATC 3 cut(s) 143, 198, 686
BceAI ACGGC 1 cut(s) 735
BciVI GTATCC 1 cut(s) 130
BclI TGATCA 1 cut(s) 549
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 3 cut(s) 168, 422, 792
BfuAI ACCTGC 1 cut(s) 406
BfuI GTATCC 1 cut(s) 130
BisI GCNGC 1 cut(s) 741
BlsI GCNGC 1 cut(s) 742
Bme18I GGWCC 1 cut(s) 756
BmgT120I GGNCC 1 cut(s) 756
BmiI GGNNCC 1 cut(s) 757
BmsI GCATC 3 cut(s) 4, 595, 827
Bpu10I CCTNAGC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 359
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 752
BseGI GGATG 2 cut(s) 154, 817
BseLI CCNNNNNNNGG 2 cut(s) 442, 752
BseMII CTCAG 3 cut(s) 115, 567, 612
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 752
BshFI GGCC 1 cut(s) 691
BsiHKAI GWGCWC 2 cut(s) 102, 799
BslFI GGGAC 1 cut(s) 769
BslI CCNNNNNNNGG 2 cut(s) 442, 752
BsmFI GGGAC 1 cut(s) 769
BsnI GGCC 1 cut(s) 691
Bsp119I TTCGAA 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 102, 799
Bsp143I GATC 4 cut(s) 73, 549, 572, 666
BspANI GGCC 1 cut(s) 691
BspCNI CTCAG 3 cut(s) 114, 568, 611
BspLI GGNNCC 1 cut(s) 757
BspMI ACCTGC 1 cut(s) 406
BspPI GGATC 2 cut(s) 580, 674
BspT104I TTCGAA 1 cut(s) 359
BssMI GATC 4 cut(s) 73, 549, 572, 666
Bst4CI ACNGT 2 cut(s) 536, 760
Bst6I CTCTTC 3 cut(s) 123, 169, 597
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 403, 501
BstDEI CTNAG 4 cut(s) 101, 576, 598, 714
BstF5I GGATG 2 cut(s) 154, 817
BstKTI GATC 4 cut(s) 76, 552, 575, 669
BstMBI GATC 4 cut(s) 73, 549, 572, 666
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNSI RCATGY 2 cut(s) 334, 562
BstV1I GCAGC 1 cut(s) 752
BstX2I RGATCY 1 cut(s) 572
BstXI CCANNNNNNTGG 1 cut(s) 631
BstYI RGATCY 1 cut(s) 572
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 1 cut(s) 691
BtsCI GGATG 2 cut(s) 154, 817
BtsI GCAGTG 1 cut(s) 569
BtsIMutI CAGTG 1 cut(s) 569
BveI ACCTGC 1 cut(s) 406
Cac8I GCNNGC 2 cut(s) 403, 501
Cfr13I GGNCC 1 cut(s) 756
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 608
CviAII CATG 6 cut(s) 307, 331, 440, 488, 559, 613
CviJI RGCY 8 cut(s) 86, 125, 347, 499, 503, 677, 691, 797
CviKI_1 RGCY 8 cut(s) 86, 125, 347, 499, 503, 677, 691, 797
CviQI GTAC 1 cut(s) 608
DdeI CTNAG 4 cut(s) 101, 576, 598, 714
DpnI GATC 4 cut(s) 75, 551, 574, 668
DpnII GATC 4 cut(s) 73, 549, 572, 666
DraIII CACNNNGTG 1 cut(s) 442
EaeI YGGCCR 1 cut(s) 689
Eam1104I CTCTTC 3 cut(s) 123, 169, 597
EarI CTCTTC 3 cut(s) 123, 169, 597
Ecl136II GAGCTC 1 cut(s) 797
Eco24I GRGCYC 1 cut(s) 799
Eco47I GGWCC 1 cut(s) 756
Eco53kI GAGCTC 1 cut(s) 797
Eco57I CTGAAG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 797
EcoT38I GRGCYC 1 cut(s) 799
FaeI CATG 6 cut(s) 310, 334, 443, 491, 562, 616
FaqI GGGAC 1 cut(s) 769
FatI CATG 6 cut(s) 306, 330, 439, 487, 558, 612
FbaI TGATCA 1 cut(s) 549
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 2 cut(s) 161, 824
FriOI GRGCYC 1 cut(s) 799
Fsp4HI GCNGC 1 cut(s) 741
FspBI CTAG 3 cut(s) 168, 422, 792
GluI GCNGC 1 cut(s) 741
HaeIII GGCC 1 cut(s) 691
HgaI GACGC 1 cut(s) 264
Hin1II CATG 6 cut(s) 310, 334, 443, 491, 562, 616
HinfI GANTC 1 cut(s) 341
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 4 cut(s) 303, 532, 577, 601
Hpy188III TCNNGA 2 cut(s) 77, 457
Hpy99I CGWCG 1 cut(s) 834
HpyAV CCTTC 2 cut(s) 127, 355
HpyCH4III ACNGT 2 cut(s) 536, 760
HpyCH4V TGCA 2 cut(s) 415, 562
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 4 cut(s) 101, 576, 598, 714
Hsp92II CATG 6 cut(s) 310, 334, 443, 491, 562, 616
Ksp22I TGATCA 1 cut(s) 549
Kzo9I GATC 4 cut(s) 73, 549, 572, 666
LpnPI CCDG 4 cut(s) 88, 411, 485, 823
Lsp1109I GCAGC 1 cut(s) 752
LweI GCATC 3 cut(s) 4, 595, 827
MaeI CTAG 3 cut(s) 168, 422, 792
MaeIII GTNAC 6 cut(s) 53, 186, 236, 278, 314, 833
MalI GATC 4 cut(s) 75, 551, 574, 668
MboI GATC 4 cut(s) 73, 549, 572, 666
MflI RGATCY 1 cut(s) 572
MhlI GDGCHC 2 cut(s) 102, 799
MluCI AATT 5 cut(s) 157, 226, 354, 629, 644
MmeI TCCRAC 2 cut(s) 638, 802
MnlI CCTC 7 cut(s) 73, 76, 320, 514, 598, 795, 801
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 3 cut(s) 192, 594, 620
MslI CAYNNNNRTG 1 cut(s) 700
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeII GATC 4 cut(s) 73, 549, 572, 666
NlaIII CATG 6 cut(s) 310, 334, 443, 491, 562, 616
NlaIV GGNNCC 1 cut(s) 757
NmeAIII GCCGAG 1 cut(s) 667
NmuCI GTSAC 2 cut(s) 186, 236
NspI RCATGY 2 cut(s) 334, 562
NspV TTCGAA 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 442
PkrI GCNGC 1 cut(s) 742
Psp124BI GAGCTC 1 cut(s) 799
PspN4I GGNNCC 1 cut(s) 757
PspPI GGNCC 1 cut(s) 756
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 1 cut(s) 609
RsaNI GTAC 1 cut(s) 608
RseI CAYNNNNRTG 1 cut(s) 700
SacI GAGCTC 1 cut(s) 799
SaqAI TTAA 3 cut(s) 192, 594, 620
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 4 cut(s) 73, 549, 572, 666
Sau96I GGNCC 1 cut(s) 756
SduI GDGCHC 2 cut(s) 102, 799
SfaNI GCATC 3 cut(s) 4, 595, 827
SfuI TTCGAA 1 cut(s) 359
SinI GGWCC 1 cut(s) 756
SmiMI CAYNNNNRTG 1 cut(s) 700
SpeI ACTAGT 1 cut(s) 167
Sse9I AATT 5 cut(s) 157, 226, 354, 629, 644
SspMI CTAG 3 cut(s) 168, 422, 792
SstI GAGCTC 1 cut(s) 799
TaaI ACNGT 2 cut(s) 536, 760
TaqI TCGA 3 cut(s) 172, 359, 495
TasI AATT 5 cut(s) 157, 226, 354, 629, 644
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 3 cut(s) 192, 594, 620
Tru9I TTAA 3 cut(s) 192, 594, 620
TscAI CASTG 1 cut(s) 569
TseFI GTSAC 2 cut(s) 186, 236
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 2 cut(s) 186, 236
TspDTI ATGAA 2 cut(s) 17, 323
TspGWI ACGGA 1 cut(s) 818
TspRI CASTG 1 cut(s) 569
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 756
XapI RAATTY 2 cut(s) 157, 644
XceI RCATGY 2 cut(s) 334, 562
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 3 cut(s) 168, 422, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.