Rh6AG140000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000269
Physical Location & Seq
Reverse (-)
21546256 .. 21546684
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG140000.1

Sequence Viewer

Length: 429 bp
ATGGCGGCCCCTAAACCGAGCAGCTCCACAACGATCTTCGATGGAGGCCCCCGAAAGAGTACTCGAATCGCTGCCTCTAAAGCATCGGCTTCGGTGATGGTCTCTGAGGTCTCGAATCAAAATTCTCCAATTTTGGAGTCCGCAAAGAAAGCTTCTGTTAACGGCACCGAAGCGGTGGTTGAGGTACCTAAACTGAAACCTACTTCCGATGAAGCGGTAATTGAGGCACCGAAACGTACTTCCTATGAACCGGTGGTTGAGGCGGAGAAACCTCCTTCCAATGATATGCGGTCGCGAAAAGAGAAGGCACCAGTGGATTTACAGTTGTTTGCCTCACATGCTGAAGCCAAAGAGGTGAAGGATCGAAAGAAGCTCATCATGAAGAAGAAAGCCTCCAGTCGTTCCATGAGCTTTTTGAACTACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.36

Weight (kDa)

9.73

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 184
AccB1I GGYRCC 4 cut(s) 164, 184, 226, 307
AccII CGCG 1 cut(s) 295
AciI CCGC 6 cut(s) 5, 141, 173, 215, 263, 289
AclWI GGATC 1 cut(s) 369
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 3 cut(s) 61, 186, 238
AgeI ACCGGT 1 cut(s) 250
AgsI TTSAA 1 cut(s) 418
AluBI AGCT 4 cut(s) 24, 152, 373, 411
AluI AGCT 4 cut(s) 24, 152, 373, 411
Alw26I GTCTC 2 cut(s) 106, 115
AlwI GGATC 1 cut(s) 369
AoxI GGCC 2 cut(s) 6, 46
ApeKI GCWGC 2 cut(s) 21, 71
ApoI RAATTY 1 cut(s) 121
AsiGI ACCGGT 1 cut(s) 250
Asp718I GGTACC 1 cut(s) 184
AspS9I GGNCC 2 cut(s) 7, 47
AsuHPI GGTGA 2 cut(s) 106, 367
BanI GGYRCC 4 cut(s) 164, 184, 226, 307
BbvI GCAGC 2 cut(s) 33, 58
BccI CCATC 2 cut(s) 35, 91
BceAI ACGGC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BcoDI GTCTC 2 cut(s) 106, 115
BisI GCNGC 3 cut(s) 6, 22, 72
BlsI GCNGC 3 cut(s) 7, 23, 73
BmcAI AGTACT 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 7, 47
BmiI GGNNCC 6 cut(s) 9, 49, 166, 186, 228, 309
BmsI GCATC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 379
BsaI GGTCTC 2 cut(s) 106, 115
BsaWI WCCGGW 1 cut(s) 250
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 2 cut(s) 311, 396
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 2 cut(s) 311, 396
BseXI GCAGC 2 cut(s) 33, 58
Bsh1236I CGCG 1 cut(s) 295
Bsh1285I CGRYCG 1 cut(s) 293
BshFI GGCC 2 cut(s) 8, 48
BshNI GGYRCC 4 cut(s) 164, 184, 226, 307
BshTI ACCGGT 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 293
BsiSI CCGG 1 cut(s) 251
BsmAI GTCTC 2 cut(s) 106, 115
BsnI GGCC 2 cut(s) 8, 48
Bso31I GGTCTC 2 cut(s) 106, 115
Bsp143I GATC 2 cut(s) 33, 361
Bsp68I TCGCGA 1 cut(s) 295
BspACI CCGC 6 cut(s) 5, 141, 173, 215, 263, 289
BspANI GGCC 2 cut(s) 8, 48
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 295
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 6 cut(s) 9, 49, 166, 186, 228, 309
BspPI GGATC 1 cut(s) 369
BspT107I GGYRCC 4 cut(s) 164, 184, 226, 307
BspTNI GGTCTC 2 cut(s) 106, 115
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 2 cut(s) 311, 396
BssAI RCCGGY 1 cut(s) 250
BssMI GATC 2 cut(s) 33, 361
Bst4CI ACNGT 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 295
BstKTI GATC 2 cut(s) 36, 364
BstMAI GTCTC 2 cut(s) 106, 115
BstMBI GATC 2 cut(s) 33, 361
BstMCI CGRYCG 1 cut(s) 293
BstMWI GCNNNNNNNGC 3 cut(s) 80, 149, 338
BstNSI RCATGY 1 cut(s) 341
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 33, 58
BsuRI GGCC 2 cut(s) 8, 48
BtsIMutI CAGTG 1 cut(s) 318
BtuMI TCGCGA 1 cut(s) 295
CciI TCATGA 1 cut(s) 378
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 7, 47
Csp6I GTAC 3 cut(s) 60, 185, 237
CspAI ACCGGT 1 cut(s) 250
CviAII CATG 3 cut(s) 338, 379, 406
CviJI RGCY 9 cut(s) 8, 24, 48, 89, 152, 347, 373, 392, 411
CviKI_1 RGCY 9 cut(s) 8, 24, 48, 89, 152, 347, 373, 392, 411
CviQI GTAC 3 cut(s) 60, 185, 237
DdeI CTNAG 1 cut(s) 105
DpnI GATC 2 cut(s) 35, 363
DpnII GATC 2 cut(s) 33, 361
EciI GGCGGA 1 cut(s) 278
Eco31I GGTCTC 2 cut(s) 106, 115
Eco57I CTGAAG 1 cut(s) 363
EcoO109I RGGNCCY 1 cut(s) 47
FaeI CATG 3 cut(s) 341, 382, 409
FaiI YATR 5 cut(s) 246, 287, 339, 380, 407
FatI CATG 3 cut(s) 337, 378, 405
Fnu4HI GCNGC 3 cut(s) 6, 22, 72
Fsp4HI GCNGC 3 cut(s) 6, 22, 72
GluI GCNGC 3 cut(s) 6, 22, 72
GsuI CTGGAG 1 cut(s) 379
HaeIII GGCC 2 cut(s) 8, 48
HapII CCGG 1 cut(s) 251
Hin1II CATG 3 cut(s) 341, 382, 409
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 3 cut(s) 66, 115, 137
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 1 cut(s) 251
HphI GGTGA 2 cut(s) 106, 367
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 2 cut(s) 106, 208
Hpy188III TCNNGA 3 cut(s) 112, 294, 379
Hpy8I GTNNAC 1 cut(s) 160
HpyAV CCTTC 3 cut(s) 285, 298, 352
HpyCH4III ACNGT 1 cut(s) 324
HpyCH4IV ACGT 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 149, 338
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 3 cut(s) 341, 382, 409
KpnI GGTACC 1 cut(s) 188
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 2 cut(s) 33, 361
LmnI GCTCC 1 cut(s) 29
LpnPI CCDG 3 cut(s) 264, 324, 409
Lsp1109I GCAGC 2 cut(s) 33, 58
LweI GCATC 1 cut(s) 92
MaeII ACGT 1 cut(s) 235
MalI GATC 2 cut(s) 35, 363
MboI GATC 2 cut(s) 33, 361
MboII GAAGA 3 cut(s) 28, 394, 397
MluCI AATT 3 cut(s) 121, 129, 219
MlyI GAGTC 1 cut(s) 146
MseI TTAA 1 cut(s) 159
MspI CCGG 1 cut(s) 251
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 3 cut(s) 80, 149, 338
NdeII GATC 2 cut(s) 33, 361
NlaIII CATG 3 cut(s) 341, 382, 409
NlaIV GGNNCC 6 cut(s) 9, 49, 166, 186, 228, 309
NruI TCGCGA 1 cut(s) 295
NspI RCATGY 1 cut(s) 341
PagI TCATGA 1 cut(s) 378
PfeI GAWTC 2 cut(s) 66, 115
PinAI ACCGGT 1 cut(s) 250
PkrI GCNGC 3 cut(s) 7, 23, 73
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PspN4I GGNNCC 6 cut(s) 9, 49, 166, 186, 228, 309
PspPI GGNCC 2 cut(s) 7, 47
RruI TCGCGA 1 cut(s) 295
RsaI GTAC 3 cut(s) 61, 186, 238
RsaNI GTAC 3 cut(s) 60, 185, 237
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 3 cut(s) 6, 22, 72
Sau3AI GATC 2 cut(s) 33, 361
Sau96I GGNCC 2 cut(s) 7, 47
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 1 cut(s) 146
SfaNI GCATC 1 cut(s) 92
Sse9I AATT 3 cut(s) 121, 129, 219
SsiI CCGC 6 cut(s) 5, 141, 173, 215, 263, 289
TaaI ACNGT 1 cut(s) 324
TaiI ACGT 1 cut(s) 238
TaqI TCGA 4 cut(s) 39, 64, 113, 364
TasI AATT 3 cut(s) 121, 129, 219
TatI WGTACW 1 cut(s) 59
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 66, 115
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 318
TseI GCWGC 2 cut(s) 21, 71
TspDTI ATGAA 3 cut(s) 225, 261, 395
TspRI CASTG 1 cut(s) 318
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 341
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.