RLG00000019920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000269
Physical Location & Seq
Reverse (-)
58526197 .. 58526862
666 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019920

Sequence Viewer

Length: 666 bp
ATGGATGCAAGTGACTTTGAAAATGTGATGGGGTTGAAGAATGCTGGGTCCGAGGTCGACTTTAAAGGTTCCACTAATGATCACCCTGAGTTGATTGCGATAATAGACTCCTTATGTGGGAAGGATAAGAAGATCAGTTTAAGGGACGTGCAGACCTACCTGAAGGATATAGAAGAAGTTGACAACAAGTTCAAGAGCCTATTTGTGCTGTTCACAATGAGCACCATCCTTAGCCCATATGCCTCACTGATGATACCAAAGAAGTGGCTATTGGCCCTGAAGGACACTCGCAGGATTAGCTCTTTAAACTGGGCTGATTACTCATTCAAATGTTTGATGGAGGCCATCATCAGTTTCAAAAAAGACTCTCAGTCCTTTTATAGCGGTTGTGTCCTATTTCTGCAACTGTTCTGTTTCAATTGTGTTTCACATGGGAAGATCATTGTGGACAAGTCCTTGTACCCAGTTGAAGCTTGGGGGGACCATGAAATGGGCAAACTACTCAAATGGGTGAACAAGCAAGGTGGTTTGCTGGATGAAAATGTTCTTGTGGCAAAGGTTGGCGATCGTGTTGGTAGTGGAGATCAGGCTAAAGCATATGGGGTGATTAAGAAAGAAATGTCTGACTTGGCTGCTAAAGTGAATGAGTTGGAAAATAATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

222

Amino Acids

24.77

Weight (kDa)

5.97

Isoelectric Point (pI)

22.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 490
AccI GTMKAC 1 cut(s) 57
AciI CCGC 1 cut(s) 384
AcuI CTGAAG 2 cut(s) 182, 299
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 2 cut(s) 117, 490
AgsI TTSAA 7 cut(s) 20, 37, 193, 328, 358, 418, 470
AhdI GACNNNNNGTC 1 cut(s) 370
AjiI CACGTC 1 cut(s) 148
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 2 cut(s) 300, 473
AluI AGCT 2 cut(s) 300, 473
Alw21I GWGCWC 1 cut(s) 224
AoxI GGCC 2 cut(s) 273, 342
ApeKI GCWGC 1 cut(s) 632
Asp700I GAANNNNTTC 1 cut(s) 543
AspS9I GGNCC 3 cut(s) 48, 274, 481
AsuHPI GGTGA 3 cut(s) 74, 523, 616
AvaII GGWCC 2 cut(s) 48, 481
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 619
BccI CCATC 4 cut(s) 22, 233, 331, 353
BclI TGATCA 1 cut(s) 79
BisI GCNGC 1 cut(s) 633
BlsI GCNGC 1 cut(s) 634
Bme18I GGWCC 2 cut(s) 48, 481
BmeRI GACNNNNNGTC 1 cut(s) 370
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 48, 274, 481
BmiI GGNNCC 3 cut(s) 49, 70, 482
BmrI ACTGGG 2 cut(s) 319, 458
BmuI ACTGGG 2 cut(s) 319, 458
Bpu10I CCTNAGC 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 490
Bse1I ACTGG 2 cut(s) 314, 464
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 3 cut(s) 10, 225, 541
BseLI CCNNNNNNNGG 2 cut(s) 117, 490
BseMII CTCAG 2 cut(s) 78, 383
BseNI ACTGG 2 cut(s) 314, 464
BseXI GCAGC 1 cut(s) 619
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 568
BshFI GGCC 2 cut(s) 275, 344
BsiEI CGRYCG 1 cut(s) 568
BsiHKAI GWGCWC 1 cut(s) 224
BslFI GGGAC 2 cut(s) 158, 494
BslI CCNNNNNNNGG 2 cut(s) 117, 490
BsmFI GGGAC 2 cut(s) 158, 494
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 2 cut(s) 275, 344
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 5 cut(s) 79, 132, 438, 565, 583
BspACI CCGC 1 cut(s) 384
BspANI GGCC 2 cut(s) 275, 344
BspCNI CTCAG 2 cut(s) 79, 382
BspLI GGNNCC 3 cut(s) 49, 70, 482
BsrI ACTGG 2 cut(s) 314, 464
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 5 cut(s) 79, 132, 438, 565, 583
Bst4CI ACNGT 1 cut(s) 408
BstDEI CTNAG 3 cut(s) 87, 230, 369
BstF5I GGATG 3 cut(s) 10, 225, 541
BstKTI GATC 5 cut(s) 82, 135, 441, 568, 586
BstMBI GATC 5 cut(s) 79, 132, 438, 565, 583
BstMCI CGRYCG 1 cut(s) 568
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 619
BstXI CCANNNNNNTGG 1 cut(s) 264
BsuRI GGCC 2 cut(s) 275, 344
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 3 cut(s) 10, 225, 541
BtsIMutI CAGTG 1 cut(s) 245
Cfr13I GGNCC 3 cut(s) 48, 274, 481
Csp6I GTAC 1 cut(s) 460
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 2 cut(s) 431, 485
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 3 cut(s) 87, 230, 369
DpnI GATC 5 cut(s) 81, 134, 440, 567, 585
DpnII GATC 5 cut(s) 79, 132, 438, 565, 583
DraI TTTAAA 2 cut(s) 64, 306
DriI GACNNNNNGTC 1 cut(s) 370
Eam1105I GACNNNNNGTC 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 48, 481
Eco57I CTGAAG 2 cut(s) 182, 299
FaeI CATG 2 cut(s) 434, 488
FaiI YATR 9 cut(s) 115, 170, 238, 240, 381, 432, 486, 598, 600
FaqI GGGAC 2 cut(s) 158, 494
FatI CATG 2 cut(s) 430, 484
FauNDI CATATG 2 cut(s) 238, 598
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 633
FokI GGATG 3 cut(s) 17, 212, 548
Fsp4HI GCNGC 1 cut(s) 633
GluI GCNGC 1 cut(s) 633
GsaI CCCAGC 1 cut(s) 48
HaeIII GGCC 2 cut(s) 275, 344
Hin1II CATG 2 cut(s) 434, 488
HincII GTYRAC 2 cut(s) 58, 181
HindII GTYRAC 2 cut(s) 58, 181
HindIII AAGCTT 1 cut(s) 471
HinfI GANTC 2 cut(s) 107, 365
HphI GGTGA 3 cut(s) 74, 523, 616
Hpy166II GTNNAC 5 cut(s) 58, 181, 213, 448, 514
Hpy188I TCNGA 2 cut(s) 52, 625
Hpy188III TCNNGA 1 cut(s) 193
Hpy8I GTNNAC 5 cut(s) 58, 181, 213, 448, 514
HpyAV CCTTC 3 cut(s) 115, 157, 274
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 8, 151, 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 3 cut(s) 87, 230, 369
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 2 cut(s) 434, 488
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 5 cut(s) 79, 132, 438, 565, 583
LpnPI CCDG 9 cut(s) 30, 99, 173, 277, 290, 295, 477, 518, 572
Lsp1109I GCAGC 1 cut(s) 619
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 11
MalI GATC 5 cut(s) 81, 134, 440, 567, 585
MboI GATC 5 cut(s) 79, 132, 438, 565, 583
MboII GAAGA 4 cut(s) 49, 142, 185, 448
MfeI CAATTG 1 cut(s) 418
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 1 cut(s) 418
MlyI GAGTC 2 cut(s) 101, 359
MmeI TCCRAC 1 cut(s) 630
MnlI CCTC 3 cut(s) 46, 253, 334
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 4 cut(s) 63, 140, 305, 609
MslI CAYNNNNRTG 1 cut(s) 328
MunI CAATTG 1 cut(s) 418
Mva1269I GAATGC 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeI CATATG 2 cut(s) 238, 598
NdeII GATC 5 cut(s) 79, 132, 438, 565, 583
NlaIII CATG 2 cut(s) 434, 488
NlaIV GGNNCC 3 cut(s) 49, 70, 482
NmuCI GTSAC 1 cut(s) 11
PctI GAATGC 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 543
PflMI CCANNNNNTGG 1 cut(s) 490
PkrI GCNGC 1 cut(s) 634
Ple19I CGATCG 1 cut(s) 568
PleI GAGTC 2 cut(s) 101, 359
PpsI GAGTC 2 cut(s) 101, 359
PspFI CCCAGC 1 cut(s) 44
PspN4I GGNNCC 3 cut(s) 49, 70, 482
PspPI GGNCC 3 cut(s) 48, 274, 481
PvuI CGATCG 1 cut(s) 568
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 328
SalI GTCGAC 1 cut(s) 56
SaqAI TTAA 4 cut(s) 63, 140, 305, 609
SatI GCNGC 1 cut(s) 633
Sau3AI GATC 5 cut(s) 79, 132, 438, 565, 583
Sau96I GGNCC 3 cut(s) 48, 274, 481
SchI GAGTC 2 cut(s) 101, 359
SduI GDGCHC 1 cut(s) 224
SetI ASST 9 cut(s) 57, 70, 150, 158, 162, 302, 475, 526, 561
SinI GGWCC 2 cut(s) 48, 481
SmiMI CAYNNNNRTG 1 cut(s) 328
Sse9I AATT 1 cut(s) 418
SsiI CCGC 1 cut(s) 384
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 57
TasI AATT 1 cut(s) 418
Tru1I TTAA 4 cut(s) 63, 140, 305, 609
Tru9I TTAA 4 cut(s) 63, 140, 305, 609
TscAI CASTG 1 cut(s) 252
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 1 cut(s) 632
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 501, 552
TspRI CASTG 1 cut(s) 252
Van91I CCANNNNNTGG 1 cut(s) 490
VpaK11BI GGWCC 2 cut(s) 48, 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 471
XmiI GTMKAC 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.