Rh6AG088400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000269
Physical Location & Seq
Reverse (-)
13211963 .. 13212687
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG088400.1

Sequence Viewer

Length: 438 bp
ATGCATGACGTCAATCATTGGTACCTCCATGTTGTGCGTCTTGATAATCAGACAAGAGAAGTGTGGGATAGCTTAGAATGTAACAGGAGACGAATGAATCTGTGCAAAGCTGTTGTAAGTGACGTTCTTGCATTTGAATCTTTTCGGGTTGAAAACGCTTGCTATGGATCTGAGTGGTGGCATCAGTTTAACTCAGAAGAGGTGCGCATGGACTTAACCATTGAATTGGTAAGGAACAAATTCAATGAGTGCTGGAAATGGATAGAGGAAGCCATCAAAACTCGGCCACCACCAATATGTTCTACACCTAAGACGACACAAAAGGAAACTAAAGCAGCACCGAAGAAAGGGACCGTGAAGAACTCAATAGTCCAACCACCTCGCACTAGAGCTCAATCCAAGAGGGGTGTGGCATCAAATGTCCGTCGCAGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

17.11

Weight (kDa)

9.63

Isoelectric Point (pI)

67.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 423
AatII GACGTC 1 cut(s) 12
Acc16I TGCGCA 1 cut(s) 206
Acc36I ACCTGC 1 cut(s) 423
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AclWI GGATC 1 cut(s) 175
AcoI YGGCCR 1 cut(s) 284
AcsI RAATTY 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 4 cut(s) 137, 152, 224, 244
AluBI AGCT 3 cut(s) 72, 110, 392
AluI AGCT 3 cut(s) 72, 110, 392
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 175
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 2 cut(s) 335, 429
ApoI RAATTY 1 cut(s) 239
Asp700I GAANNNNTTC 2 cut(s) 141, 239
Asp718I GGTACC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 351
AvaII GGWCC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 1 cut(s) 347
BccI CCATC 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 387
BfuAI ACCTGC 1 cut(s) 423
BisI GCNGC 2 cut(s) 336, 430
BlsI GCNGC 2 cut(s) 337, 431
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 23, 352
BmsI GCATC 2 cut(s) 190, 422
BsaHI GRCGYC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 162, 207
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 394
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 82
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 1 cut(s) 167
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 2 cut(s) 163, 206
BspLI GGNNCC 2 cut(s) 23, 352
BspMI ACCTGC 1 cut(s) 423
BspPI GGATC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 21
BssMI GATC 1 cut(s) 167
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 4 cut(s) 73, 171, 193, 309
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 167
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 167
BsuRI GGCC 1 cut(s) 286
BveI ACCTGC 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 351
CseI GACGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 22
CviAII CATG 3 cut(s) 5, 29, 208
CviJI RGCY 5 cut(s) 72, 110, 272, 286, 392
CviKI_1 RGCY 5 cut(s) 72, 110, 272, 286, 392
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 4 cut(s) 73, 171, 193, 309
DpnI GATC 1 cut(s) 169
DpnII GATC 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 284
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 392
Eco24I GRGCYC 1 cut(s) 394
Eco47I GGWCC 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 392
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 394
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 3 cut(s) 8, 32, 211
FaiI YATR 5 cut(s) 6, 30, 165, 209, 298
FaqI GGGAC 1 cut(s) 364
FatI CATG 3 cut(s) 4, 28, 207
Fnu4HI GCNGC 2 cut(s) 336, 430
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 2 cut(s) 336, 430
FspAI RTGCGCAY 1 cut(s) 206
FspBI CTAG 1 cut(s) 387
FspI TGCGCA 1 cut(s) 206
GlaI GCGC 1 cut(s) 206
GluI GCNGC 2 cut(s) 336, 430
HaeIII GGCC 1 cut(s) 286
HgaI GACGC 1 cut(s) 26
HhaI GCGC 1 cut(s) 207
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 8, 32, 211
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 2 cut(s) 97, 137
Hpy188I TCNGA 3 cut(s) 51, 172, 196
Hpy188III TCNNGA 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 429
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 2 cut(s) 9, 123
HpyCH4V TGCA 3 cut(s) 4, 105, 131
HpyF3I CTNAG 4 cut(s) 73, 171, 193, 309
HpySE526I ACGT 2 cut(s) 9, 123
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 8, 32, 211
HspAI GCGC 1 cut(s) 205
KpnI GGTACC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 167
LpnPI CCDG 3 cut(s) 70, 238, 418
Lsp1109I GCAGC 1 cut(s) 347
LweI GCATC 2 cut(s) 190, 422
MaeI CTAG 1 cut(s) 387
MaeII ACGT 2 cut(s) 9, 123
MaeIII GTNAC 2 cut(s) 80, 119
MalI GATC 1 cut(s) 169
MboI GATC 1 cut(s) 167
MboII GAAGA 3 cut(s) 209, 355, 370
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 2 cut(s) 224, 239
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 5 cut(s) 35, 193, 259, 390, 396
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 141, 239
MseI TTAA 2 cut(s) 189, 215
MslI CAYNNNNRTG 1 cut(s) 295
NdeII GATC 1 cut(s) 167
NlaIII CATG 3 cut(s) 8, 32, 211
NlaIV GGNNCC 2 cut(s) 23, 352
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 119
NsbI TGCGCA 1 cut(s) 206
NsiI ATGCAT 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 423
PdmI GAANNNNTTC 2 cut(s) 141, 239
PfeI GAWTC 2 cut(s) 97, 137
PkrI GCNGC 2 cut(s) 337, 431
Psp124BI GAGCTC 1 cut(s) 394
PspN4I GGNNCC 2 cut(s) 23, 352
PspPI GGNCC 1 cut(s) 351
PsrI GAACNNNNNNTAC 2 cut(s) 108, 140
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 295
SacI GAGCTC 1 cut(s) 394
SaqAI TTAA 2 cut(s) 189, 215
SatI GCNGC 2 cut(s) 336, 430
Sau3AI GATC 1 cut(s) 167
Sau96I GGNCC 1 cut(s) 351
SduI GDGCHC 1 cut(s) 394
SfaNI GCATC 2 cut(s) 190, 422
SinI GGWCC 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 295
Sse9I AATT 2 cut(s) 224, 239
SspMI CTAG 1 cut(s) 387
SstI GAGCTC 1 cut(s) 394
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 2 cut(s) 12, 126
TasI AATT 2 cut(s) 224, 239
TfiI GAWTC 2 cut(s) 97, 137
Tru1I TTAA 2 cut(s) 189, 215
Tru9I TTAA 2 cut(s) 189, 215
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 2 cut(s) 335, 429
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 351
XapI RAATTY 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmnI GAANNNNTTC 2 cut(s) 141, 239
XspI CTAG 1 cut(s) 387
ZraI GACGTC 1 cut(s) 10
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.