Rh6CG077500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000269
Physical Location & Seq
Reverse (-)
8126398 .. 8127140
743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG077500.1

Sequence Viewer

Length: 372 bp
ATGAAGAAGAAATCCTCTGGTCGTTCCATGAGCTTTTTGAACTACCTGTGTTTGGTTGCAGATTTTAGCGATGAGAAAAAGGCAGCCTGTTCAGCAATTGGATTTGATGTGTTGTTGAAGATATCAGGAAGAAAAATTCACCACTCTATGTTGCGTGTCCTTGTGGACTCCGTAGACCCCAATGCATGTACTATAACTATGCACGGAAAGGAGATTGAAATGGATGCAAGTAACTTTGAAAATGTGATGGGGTTGAAGAATGTTGGGTCCGAGGTCGACTTTAAAGCTTCCACTAGTGATCACCCTGAGTTGATGGCGATAATAAACTCCTTGTGTGGGAAGGATAAGAAGATCAGTTTAAGGGACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

123

Amino Acids

13.54

Weight (kDa)

7.69

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 174, 276
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 2 cut(s) 52, 336
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 5 cut(s) 40, 118, 218, 239, 256
AhlI ACTAGT 1 cut(s) 293
AluBI AGCT 2 cut(s) 33, 287
AluI AGCT 2 cut(s) 33, 287
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 2 cut(s) 131, 293
AvaII GGWCC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 95
BccI CCATC 2 cut(s) 241, 307
BclI TGATCA 1 cut(s) 298
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme18I GGWCC 1 cut(s) 267
BmgT120I GGNCC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 268
BmsI GCATC 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 336
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 52, 336
BseMII CTCAG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 52, 336
Bsp143I GATC 2 cut(s) 298, 351
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 2 cut(s) 298, 351
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 2 cut(s) 301, 354
BstMBI GATC 2 cut(s) 298, 351
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNSI RCATGY 2 cut(s) 189, 370
BstV1I GCAGC 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 189
CviAII CATG 3 cut(s) 28, 186, 367
CviJI RGCY 3 cut(s) 33, 86, 287
CviKI_1 RGCY 3 cut(s) 33, 86, 287
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 306
DpnI GATC 2 cut(s) 300, 353
DpnII GATC 2 cut(s) 298, 351
DraI TTTAAA 1 cut(s) 283
Eco32I GATATC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 267
EcoRV GATATC 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 187
FaeI CATG 3 cut(s) 31, 189, 370
FaiI YATR 6 cut(s) 29, 149, 187, 194, 200, 368
FatI CATG 3 cut(s) 27, 185, 366
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 2 cut(s) 174, 276
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 294
GluI GCNGC 1 cut(s) 84
Hin1II CATG 3 cut(s) 31, 189, 370
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 1 cut(s) 167
HphI GGTGA 2 cut(s) 131, 293
Hpy166II GTNNAC 3 cut(s) 166, 175, 277
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 3 cut(s) 166, 175, 277
HpyAV CCTTC 1 cut(s) 334
HpyCH4V TGCA 4 cut(s) 59, 185, 202, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 3 cut(s) 31, 189, 370
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 2 cut(s) 298, 351
LpnPI CCDG 5 cut(s) 3, 59, 100, 111, 318
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 300, 353
MboI GATC 2 cut(s) 298, 351
MboII GAAGA 6 cut(s) 16, 19, 130, 141, 268, 361
MfeI CAATTG 1 cut(s) 96
MluCI AATT 2 cut(s) 96, 135
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 2 cut(s) 25, 265
Mph1103I ATGCAT 1 cut(s) 187
MseI TTAA 2 cut(s) 282, 359
MunI CAATTG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 2 cut(s) 298, 351
NlaIII CATG 3 cut(s) 31, 189, 370
NlaIV GGNNCC 1 cut(s) 268
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 2 cut(s) 189, 370
PciI ACATGT 1 cut(s) 366
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PscI ACATGT 1 cut(s) 366
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 267
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 282, 359
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 298, 351
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 1 cut(s) 161
SetI ASST 4 cut(s) 35, 48, 276, 289
SfaNI GCATC 1 cut(s) 214
SinI GGWCC 1 cut(s) 267
SpeI ACTAGT 1 cut(s) 293
Sse9I AATT 2 cut(s) 96, 135
SspMI CTAG 1 cut(s) 294
TaqI TCGA 1 cut(s) 276
TasI AATT 2 cut(s) 96, 135
TatI WGTACW 1 cut(s) 188
Tru1I TTAA 2 cut(s) 282, 359
Tru9I TTAA 2 cut(s) 282, 359
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 160, 219
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 135
XceI RCATGY 2 cut(s) 189, 370
XmiI GTMKAC 2 cut(s) 174, 276
XspI CTAG 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.