Rroxscaffold_6G00396940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000269
Physical Location & Seq
Reverse (-)
18503212 .. 18508666
5455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396940.1

Sequence Viewer

Length: 249 bp
ATGGATCCACCTTCATCCGCGAACTTGCAGGTGGTTTGCTTGGATGAAAATGTTCTTGTGGTAAAAGTTGGCGATCGTGTTGGTAGTGGAGATCATGCCAAAACATATGGGGTGATTAAGAAAGAAATGTTTGACTTGGCTGCTAAAGTGAATGGGTTGGAAAATAATATGTGCAATCCGAGAGATGATATGATGGGAAAGATGGACAAAGTCTTAAGTATGCTGAACGCTCGACTGCACAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.04

Weight (kDa)

6.71

Isoelectric Point (pI)

20.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 19
Acc36I ACCTGC 1 cut(s) 19
AccII CGCG 1 cut(s) 20
AciI CCGC 1 cut(s) 18
AclWI GGATC 1 cut(s) 12
AflII CTTAAG 1 cut(s) 214
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 124
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 187, 196
BfrI CTTAAG 1 cut(s) 214
BfuAI ACCTGC 1 cut(s) 19
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 6
BseGI GGATG 2 cut(s) 14, 49
BseXI GCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 20
Bsh1285I CGRYCG 1 cut(s) 76
BsiEI CGRYCG 1 cut(s) 76
Bsp143I GATC 3 cut(s) 4, 73, 91
BspACI CCGC 1 cut(s) 18
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 19
BspPI GGATC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 214
BssMI GATC 3 cut(s) 4, 73, 91
BstAFI CTTAAG 1 cut(s) 214
BstF5I GGATG 2 cut(s) 14, 49
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 3 cut(s) 7, 76, 94
BstMBI GATC 3 cut(s) 4, 73, 91
BstMCI CGRYCG 1 cut(s) 76
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtsCI GGATG 2 cut(s) 14, 49
BveI ACCTGC 1 cut(s) 19
CviAII CATG 1 cut(s) 95
CviJI RGCY 1 cut(s) 140
CviKI_1 RGCY 1 cut(s) 140
DpnI GATC 3 cut(s) 6, 75, 93
DpnII GATC 3 cut(s) 4, 73, 91
FaeI CATG 1 cut(s) 98
FaiI YATR 6 cut(s) 96, 106, 108, 170, 191, 221
FatI CATG 1 cut(s) 94
FauNDI CATATG 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
Hin1II CATG 1 cut(s) 98
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 21
HpyCH4V TGCA 3 cut(s) 28, 174, 238
Hsp92II CATG 1 cut(s) 98
Kzo9I GATC 3 cut(s) 4, 73, 91
LpnPI CCDG 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 127
MalI GATC 3 cut(s) 6, 75, 93
MboI GATC 3 cut(s) 4, 73, 91
MflI RGATCY 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 51
MseI TTAA 2 cut(s) 117, 215
MspCI CTTAAG 1 cut(s) 214
MvnI CGCG 1 cut(s) 20
NdeI CATATG 1 cut(s) 106
NdeII GATC 3 cut(s) 4, 73, 91
NlaIII CATG 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 51
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 142
Ple19I CGATCG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 209
PvuI CGATCG 1 cut(s) 76
SaqAI TTAA 2 cut(s) 117, 215
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 3 cut(s) 4, 73, 91
SetI ASST 2 cut(s) 13, 33
SmlI CTYRAG 1 cut(s) 214
SmoI CTYRAG 1 cut(s) 214
SsiI CCGC 1 cut(s) 18
TaqI TCGA 1 cut(s) 232
Tru1I TTAA 2 cut(s) 117, 215
Tru9I TTAA 2 cut(s) 117, 215
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 60
Tth111I GACNNNGTC 1 cut(s) 209
Vha464I CTTAAG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.