Rh6CG077200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000269
Physical Location & Seq
Reverse (-)
8124048 .. 8124772
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG077200.1

Sequence Viewer

Length: 411 bp
ATGCATGACGTCAATCATTGGTACCTCCATGTTGTGCGTCTTGATAATCAGACAAGAGAAGTGTGGGATAGCTTAGAATGTAACAGGAGACGAATGAATCTGTGCAAAGCTGTTGTAAGTGACGTTCTTGCATTTGAATCTTTTCGGGTTGAAAACGCTTTTAACTCAGAAGAGGTGCGCATGGACTTAACCATTGAATTGGTAAGGAACAAATTCAATGAGTGCTGGAAATGGATAGAGGAAGCCATCAAAACTCGGCCACCACCAATATGTTCTACACCTAAGACGACACAAAAGGAAACTAAAGCAGCACCGAAGAAAGGGACCGTGAAGAACTCAATAGTCCAACCACCTCGCACTAGAGCTCAATCCAAGAGGGGTGTGGCATCAAATGTCCGTCGCAGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.94

Weight (kDa)

9.9

Isoelectric Point (pI)

66.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 396
AatII GACGTC 1 cut(s) 12
Acc16I TGCGCA 1 cut(s) 179
Acc36I ACCTGC 1 cut(s) 396
Acc65I GGTACC 1 cut(s) 21
AccB1I GGYRCC 1 cut(s) 21
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 4 cut(s) 137, 152, 197, 217
AluBI AGCT 3 cut(s) 72, 110, 365
AluI AGCT 3 cut(s) 72, 110, 365
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 82
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 308, 402
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 2 cut(s) 141, 212
Asp718I GGTACC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 324
AvaII GGWCC 1 cut(s) 324
BanI GGYRCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 367
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 320
BccI CCATC 1 cut(s) 254
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 396
BisI GCNGC 2 cut(s) 309, 403
BlsI GCNGC 2 cut(s) 310, 404
Bme18I GGWCC 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 324
BmiI GGNNCC 2 cut(s) 23, 325
BmsI GCATC 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 320
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 367
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 1 cut(s) 320
BsmAI GTCTC 1 cut(s) 82
BsmBI CGTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 337
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 367
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 23, 325
BspMI ACCTGC 1 cut(s) 396
BspT107I GGYRCC 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 9
BstDEI CTNAG 3 cut(s) 73, 166, 282
BstHHI GCGC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 320
BstXI CCANNNNNNTGG 1 cut(s) 199
BsuRI GGCC 1 cut(s) 259
BveI ACCTGC 1 cut(s) 396
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 324
CseI GACGC 1 cut(s) 26
Csp6I GTAC 1 cut(s) 22
CviAII CATG 3 cut(s) 5, 29, 181
CviJI RGCY 5 cut(s) 72, 110, 245, 259, 365
CviKI_1 RGCY 5 cut(s) 72, 110, 245, 259, 365
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 3 cut(s) 73, 166, 282
EaeI YGGCCR 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 365
Eco24I GRGCYC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 365
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 367
Esp3I CGTCTC 1 cut(s) 82
FaeI CATG 3 cut(s) 8, 32, 184
FaiI YATR 4 cut(s) 6, 30, 182, 271
FaqI GGGAC 1 cut(s) 337
FatI CATG 3 cut(s) 4, 28, 180
Fnu4HI GCNGC 2 cut(s) 309, 403
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 2 cut(s) 309, 403
FspAI RTGCGCAY 1 cut(s) 179
FspBI CTAG 1 cut(s) 360
FspI TGCGCA 1 cut(s) 179
GlaI GCGC 1 cut(s) 179
GluI GCNGC 2 cut(s) 309, 403
HaeIII GGCC 1 cut(s) 259
HgaI GACGC 1 cut(s) 26
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 8, 32, 184
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 2 cut(s) 97, 137
Hpy188I TCNGA 2 cut(s) 51, 169
Hpy188III TCNNGA 1 cut(s) 41
Hpy99I CGWCG 1 cut(s) 402
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 2 cut(s) 9, 123
HpyCH4V TGCA 3 cut(s) 4, 105, 131
HpyF3I CTNAG 3 cut(s) 73, 166, 282
HpySE526I ACGT 2 cut(s) 9, 123
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 8, 32, 184
HspAI GCGC 1 cut(s) 178
KpnI GGTACC 1 cut(s) 25
LpnPI CCDG 3 cut(s) 70, 211, 391
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 1 cut(s) 395
MaeI CTAG 1 cut(s) 360
MaeII ACGT 2 cut(s) 9, 123
MaeIII GTNAC 2 cut(s) 80, 119
MboII GAAGA 3 cut(s) 182, 328, 343
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 2 cut(s) 197, 212
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 5 cut(s) 35, 166, 232, 363, 369
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 2 cut(s) 141, 212
MseI TTAA 2 cut(s) 162, 188
MslI CAYNNNNRTG 1 cut(s) 268
NlaIII CATG 3 cut(s) 8, 32, 184
NlaIV GGNNCC 2 cut(s) 23, 325
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 119
NsbI TGCGCA 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 396
PdmI GAANNNNTTC 2 cut(s) 141, 212
PfeI GAWTC 2 cut(s) 97, 137
PkrI GCNGC 2 cut(s) 310, 404
Psp124BI GAGCTC 1 cut(s) 367
PspN4I GGNNCC 2 cut(s) 23, 325
PspPI GGNCC 1 cut(s) 324
PsrI GAACNNNNNNTAC 2 cut(s) 108, 140
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 268
SacI GAGCTC 1 cut(s) 367
SaqAI TTAA 2 cut(s) 162, 188
SatI GCNGC 2 cut(s) 309, 403
Sau96I GGNCC 1 cut(s) 324
SduI GDGCHC 1 cut(s) 367
SfaNI GCATC 1 cut(s) 395
SinI GGWCC 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 268
Sse9I AATT 2 cut(s) 197, 212
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 367
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 2 cut(s) 12, 126
TasI AATT 2 cut(s) 197, 212
TfiI GAWTC 2 cut(s) 97, 137
Tru1I TTAA 2 cut(s) 162, 188
Tru9I TTAA 2 cut(s) 162, 188
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 2 cut(s) 308, 402
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 324
XapI RAATTY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XmnI GAANNNNTTC 2 cut(s) 141, 212
XspI CTAG 1 cut(s) 360
ZraI GACGTC 1 cut(s) 10
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.