Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000269

Physical Location & Seq

Genomic Coordinates Forward (+)

26688321 .. 26689436

Gene Structure 1116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGGAAGAATGTTGAGAAAGAAGCCTCATGCCAGAATATTGAGAAACAGAGGGATGAAGAAAAAATAATTGATCTTACTGACTCCTGCAAGAATGTTGAGAAGGAGGCCTCATGGGTGAATGTTCAGAAACAGAAGGATGAAGAAAAAATAATTGATCTTACTGACTCCTGCAAGAATGTTGAGAAGGAAGCCTCATGCCAGAATGTTGAGAAACAGAGGGAAGAAGAAAAAATAATTGATCTTACTGACTCCTGCAAGAATGTTGAGAAGGAGGCCCCCTGCAAGAATGTTTATGTTGAGAAGCAGAAGGTTAGGGAGTTTAAGATTGATGTTATCATGGATGTGGATGACGAAGCAGTCCTGGATTATGTTTATAATGGAGTTGGCAGTGAATTGATTCTTGTTGAGTGCAATGGTCAGAGTTGTAAGAGGGCAAGGACTCTCCTACCGAACACATGGCTTAACGATGAGGTTGTGACCATATTTGCCTCTTATCTACTTGCAAGTAGCACTGGCGACAATGTTTATTTCCACACTTTTTTCAGCAACAAGCTAAAATCATATTGTACGTATGAAAAACCGGTAGGAAAAGTTCCTACACCAAAGAAAATGTGGGTAAAAAGTTACAGTAAATACCTTCCTCATTGCAAAAAGATGTTCATACCAATCCATGACTCAGATCATTGGTATGTCTTTGTTGTGTGTATAGATAACGAGACAGGAGAATACTGGTTGAATGTCTTTGACATTATTTTCGGCCATCTTGTGAAGAAGACTAAGAAATTTGAAGATTTTCCCATTTTTAAGCCGCCACAATGTCCCAAACAAGAGGGTACTGATGACTGCGGGATCTTTACAATCAAACACATGGAGCAGTATGATGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009909 GO:0009911 GO:0009987 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0055044 GO:0065007 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

298

Amino Acids

34.59

Weight (kDa)

5.17

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	154 - 293	1.3e-09	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000269)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis	RchiOBHm_Chr7g0204351
rosa_laevigata	RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora	Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa	Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha	Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AasI	GACNNNNNNGTC	1 cut(s)	359
AciI	CCGC	2 cut(s)	812, 849
AclWI	GGATC	1 cut(s)	860
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	1 cut(s)	785
AfaI	GTAC	2 cut(s)	571, 838
AgeI	ACCGGT	1 cut(s)	583
AgsI	TTSAA	2 cut(s)	739, 791
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	1 cut(s)	556
AluI	AGCT	1 cut(s)	556
Alw26I	GTCTC	1 cut(s)	713
AlwI	GGATC	1 cut(s)	860
AoxI	GGCC	3 cut(s)	108, 276, 760
ApoI	RAATTY	1 cut(s)	785
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
AsiGI	ACCGGT	1 cut(s)	583
Asp700I	GAANNNNTTC	2 cut(s)	399, 795
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	782
BccI	CCATC	1 cut(s)	771
BciT130I	CCWGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	713
BisI	GCNGC	1 cut(s)	812
BlsI	GCNGC	1 cut(s)	813
Bme1390I	CCNGG	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	782
BsaAI	YACGTR	1 cut(s)	573
BsaWI	WCCGGW	1 cut(s)	583
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	2 cut(s)	520, 737
Bse3DI	GCAATG	2 cut(s)	421, 646
BseBI	CCWGG	1 cut(s)	365
BseGI	GGATG	4 cut(s)	61, 145, 349, 355
BseMI	GCAATG	2 cut(s)	421, 646
BseMII	CTCAG	1 cut(s)	693
BseNI	ACTGG	2 cut(s)	520, 737
BshFI	GGCC	3 cut(s)	110, 278, 762
BshTI	ACCGGT	1 cut(s)	583
BsiSI	CCGG	1 cut(s)	584
BslFI	GGGAC	1 cut(s)	807
BsmAI	GTCTC	1 cut(s)	713
BsmFI	GGGAC	1 cut(s)	807
BsnI	GGCC	3 cut(s)	110, 278, 762
Bsp143I	GATC	5 cut(s)	73, 157, 241, 682, 852
BspACI	CCGC	2 cut(s)	812, 849
BspANI	GGCC	3 cut(s)	110, 278, 762
BspCNI	CTCAG	1 cut(s)	692
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	860
BsrDI	GCAATG	2 cut(s)	421, 646
BsrFI	RCCGGY	1 cut(s)	583
BsrI	ACTGG	2 cut(s)	520, 737
BssAI	RCCGGY	1 cut(s)	583
BssMI	GATC	5 cut(s)	73, 157, 241, 682, 852
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	1 cut(s)	882
BstBAI	YACGTR	1 cut(s)	573
BstDEI	CTNAG	2 cut(s)	679, 780
BstF5I	GGATG	4 cut(s)	61, 145, 349, 355
BstKTI	GATC	5 cut(s)	76, 160, 244, 685, 855
BstMAI	GTCTC	1 cut(s)	713
BstMBI	GATC	5 cut(s)	73, 157, 241, 682, 852
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	363
BstSNI	TACGTA	1 cut(s)	573
BstV2I	GAAGAC	1 cut(s)	782
BstX2I	RGATCY	1 cut(s)	852
BstYI	RGATCY	1 cut(s)	852
BsuRI	GGCC	3 cut(s)	110, 278, 762
BtsCI	GGATG	4 cut(s)	61, 145, 349, 355
BtsI	GCAGTG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	397, 513
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	570, 837
CspAI	ACCGGT	1 cut(s)	583
CviAII	CATG	7 cut(s)	30, 114, 198, 340, 459, 674, 871
CviJI	RGCY	8 cut(s)	26, 110, 194, 278, 463, 556, 762, 811
CviKI_1	RGCY	8 cut(s)	26, 110, 194, 278, 463, 556, 762, 811
CviQI	GTAC	2 cut(s)	570, 837
DdeI	CTNAG	2 cut(s)	679, 780
DpnI	GATC	5 cut(s)	75, 159, 243, 684, 854
DpnII	GATC	5 cut(s)	73, 157, 241, 682, 852
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
EaeI	YGGCCR	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
Eco105I	TACGTA	1 cut(s)	573
Eco147I	AGGCCT	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	363
FaeI	CATG	7 cut(s)	33, 117, 201, 343, 462, 677, 874
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	7 cut(s)	29, 113, 197, 339, 458, 673, 870
FauI	CCCGC	1 cut(s)	842
Fnu4HI	GCNGC	1 cut(s)	812
FokI	GGATG	4 cut(s)	68, 152, 356, 362
Fsp4HI	GCNGC	1 cut(s)	812
GluI	GCNGC	1 cut(s)	812
HaeIII	GGCC	3 cut(s)	110, 278, 762
HapII	CCGG	1 cut(s)	584
Hin1II	CATG	7 cut(s)	33, 117, 201, 343, 462, 677, 874
HinfI	GANTC	6 cut(s)	83, 167, 251, 400, 442, 677
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	129, 423, 682
HpyAV	CCTTC	6 cut(s)	97, 130, 181, 265, 304, 650
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	1 cut(s)	572
HpyCH4V	TGCA	7 cut(s)	90, 174, 258, 285, 414, 506, 651
HpyF3I	CTNAG	2 cut(s)	679, 780
HpySE526I	ACGT	1 cut(s)	572
Hsp92II	CATG	7 cut(s)	33, 117, 201, 343, 462, 677, 874
Kzo9I	GATC	5 cut(s)	73, 157, 241, 682, 852
LmnI	GCTCC	1 cut(s)	874
MaeII	ACGT	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	478, 626
MalI	GATC	5 cut(s)	75, 159, 243, 684, 854
MboI	GATC	5 cut(s)	73, 157, 241, 682, 852
MboII	GAAGA	8 cut(s)	19, 71, 155, 236, 239, 784, 787, 803
MflI	RGATCY	1 cut(s)	852
MluCI	AATT	5 cut(s)	69, 153, 237, 395, 785
MlyI	GAGTC	5 cut(s)	77, 161, 245, 436, 671
MroXI	GAANNNNTTC	2 cut(s)	399, 795
MseI	TTAA	3 cut(s)	324, 465, 807
MslI	CAYNNNNRTG	2 cut(s)	344, 690
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
NdeII	GATC	5 cut(s)	73, 157, 241, 682, 852
NlaIII	CATG	7 cut(s)	33, 117, 201, 343, 462, 677, 874
NlaIV	GGNNCC	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	478
PceI	AGGCCT	1 cut(s)	110
PdmI	GAANNNNTTC	2 cut(s)	399, 795
PfeI	GAWTC	1 cut(s)	400
PfoI	TCCNGGA	1 cut(s)	363
PinAI	ACCGGT	1 cut(s)	583
PkrI	GCNGC	1 cut(s)	813
PleI	GAGTC	5 cut(s)	77, 161, 245, 436, 671
PpsI	GAGTC	5 cut(s)	77, 161, 245, 436, 671
Ppu21I	YACGTR	1 cut(s)	573
PsiI	TTATAA	1 cut(s)	378
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	277
PsrI	GAACNNNNNNTAC	2 cut(s)	579, 611
PsuI	RGATCY	1 cut(s)	852
RsaI	GTAC	2 cut(s)	571, 838
RsaNI	GTAC	2 cut(s)	570, 837
RseI	CAYNNNNRTG	2 cut(s)	344, 690
SaqAI	TTAA	3 cut(s)	324, 465, 807
SatI	GCNGC	1 cut(s)	812
Sau3AI	GATC	5 cut(s)	73, 157, 241, 682, 852
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	5 cut(s)	77, 161, 245, 436, 671
ScrFI	CCNGG	1 cut(s)	365
SetI	ASST	5 cut(s)	315, 477, 558, 575, 642
SmiMI	CAYNNNNRTG	2 cut(s)	344, 690
SnaBI	TACGTA	1 cut(s)	573
Sse9I	AATT	5 cut(s)	69, 153, 237, 395, 785
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	2 cut(s)	812, 849
SspI	AATATT	1 cut(s)	40
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	1 cut(s)	575
TasI	AATT	5 cut(s)	69, 153, 237, 395, 785
TauI	GCSGC	1 cut(s)	814
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	3 cut(s)	324, 465, 807
Tru9I	TTAA	3 cut(s)	324, 465, 807
TscAI	CASTG	2 cut(s)	397, 520
TseFI	GTSAC	1 cut(s)	478
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	4 cut(s)	72, 156, 591, 652
TspRI	CASTG	2 cut(s)	397, 520
XapI	RAATTY	1 cut(s)	785
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XmnI	GAANNNNTTC	2 cut(s)	399, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.