Rroxscaffold_3G00245900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000269
Physical Location & Seq
Forward (+)
38969662 .. 38972771
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245900.1

Sequence Viewer

Length: 519 bp
ATGGACTTAACCATTGAATTGGTAAGGAACAAATTCAATGAGTGCTGGAAATGGATCAAGGAAGCCATCAAAACAAGGCCACCACCAATATGTTCTACACCTAAGACGGCACAAAGGGAAACTAAAGCATCACCGAAGAAAGGGACCGTGAAGAACCCAATCGTCCAACCACTTCGCACTAGATCTCAATCCAAGAGGGGTGTGGCATCAAATGTCCGTCGTAGCAGAATTCGAGTCACTAGGCCACCACCAATAACTCCGAGGGAGGTGAATTGGCATTCCCATCTTGTTCCTCTTCCCGGTGGCATAAGATACAACTGCATCTCTTTTTGTTGTACGGGACCGACGTTGTACAGGTGTGCGCATGTGCCGCATGGTTTTTTAGTGACATTGGCGATATGGATGCAAAATCCTTCTTCAATAGCAGAACATGTGTGCGCATGTATTGGCTTTAAGTTGTCTTCCTCTCATATTCATCAGAGATATGCTTATGCTTTTCATCCAATGCGGGGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.55

Weight (kDa)

10.42

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 363, 439
AciI CCGC 2 cut(s) 371, 508
AclWI GGATC 1 cut(s) 62
AcsI RAATTY 2 cut(s) 32, 228
AfaI GTAC 2 cut(s) 337, 353
AfiI CCNNNNNNNGG 3 cut(s) 140, 299, 509
AflIII ACRYGT 1 cut(s) 430
AgsI TTSAA 3 cut(s) 17, 37, 420
AlwI GGATC 1 cut(s) 62
AoxI GGCC 2 cut(s) 77, 242
ApoI RAATTY 2 cut(s) 32, 228
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 2 cut(s) 364, 440
AspS9I GGNCC 3 cut(s) 144, 341, 512
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 2 cut(s) 123, 280
AvaII GGWCC 3 cut(s) 144, 341, 512
BbsI GAAGAC 1 cut(s) 453
BccI CCATC 2 cut(s) 74, 291
BceAI ACGGC 1 cut(s) 123
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BcnI CCSGG 1 cut(s) 300
BfaI CTAG 2 cut(s) 180, 240
BglII AGATCT 1 cut(s) 182
BisI GCNGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 372
Bme1390I CCNGG 1 cut(s) 300
Bme18I GGWCC 3 cut(s) 144, 341, 512
BmgT120I GGNCC 3 cut(s) 144, 341, 512
BmiI GGNNCC 3 cut(s) 145, 342, 513
BmrFI CCNGG 1 cut(s) 300
BmsI GCATC 4 cut(s) 137, 215, 330, 393
BpiI GAAGAC 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 299, 509
Bse8I GATNNNNATC 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 408, 499
BseJI GATNNNNATC 1 cut(s) 187
BseLI CCNNNNNNNGG 3 cut(s) 140, 299, 509
BshFI GGCC 2 cut(s) 79, 244
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 2 cut(s) 157, 354
BslI CCNNNNNNNGG 3 cut(s) 140, 299, 509
BsmFI GGGAC 2 cut(s) 157, 354
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 2 cut(s) 79, 244
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 2 cut(s) 54, 182
BspACI CCGC 2 cut(s) 371, 508
BspANI GGCC 2 cut(s) 79, 244
BspLI GGNNCC 3 cut(s) 145, 342, 513
BspPI GGATC 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 351
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 2 cut(s) 54, 182
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 300
BstAUI TGTACA 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 2 cut(s) 408, 499
BstHHI GCGC 2 cut(s) 364, 440
BstKTI GATC 2 cut(s) 57, 185
BstMBI GATC 2 cut(s) 54, 182
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNSI RCATGY 3 cut(s) 368, 434, 444
BstSCI CCNGG 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 19
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 2 cut(s) 79, 244
BtsCI GGATG 2 cut(s) 408, 499
CfoI GCGC 2 cut(s) 364, 440
Cfr13I GGNCC 3 cut(s) 144, 341, 512
Csp6I GTAC 2 cut(s) 336, 352
CviAII CATG 4 cut(s) 365, 374, 431, 441
CviJI RGCY 4 cut(s) 65, 79, 244, 450
CviKI_1 RGCY 4 cut(s) 65, 79, 244, 450
CviQI GTAC 2 cut(s) 336, 352
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 56, 184
DpnII GATC 2 cut(s) 54, 182
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco47I GGWCC 3 cut(s) 144, 341, 512
EcoRI GAATTC 1 cut(s) 228
FaeI CATG 4 cut(s) 368, 377, 434, 444
FaqI GGGAC 2 cut(s) 157, 354
FatI CATG 4 cut(s) 364, 373, 430, 440
FauI CCCGC 1 cut(s) 501
Fnu4HI GCNGC 1 cut(s) 371
FokI GGATG 2 cut(s) 415, 486
Fsp4HI GCNGC 1 cut(s) 371
FspAI RTGCGCAY 2 cut(s) 363, 439
FspBI CTAG 2 cut(s) 180, 240
FspI TGCGCA 2 cut(s) 363, 439
GlaI GCGC 2 cut(s) 363, 439
GluI GCNGC 1 cut(s) 371
HaeIII GGCC 2 cut(s) 79, 244
HapII CCGG 1 cut(s) 300
HhaI GCGC 2 cut(s) 364, 440
Hin1II CATG 4 cut(s) 368, 377, 434, 444
Hin6I GCGC 2 cut(s) 362, 438
HinP1I GCGC 2 cut(s) 362, 438
HinfI GANTC 1 cut(s) 234
HpaII CCGG 1 cut(s) 300
HphI GGTGA 2 cut(s) 123, 280
Hpy188I TCNGA 2 cut(s) 261, 480
Hpy99I CGWCG 2 cut(s) 222, 349
HpyAV CCTTC 1 cut(s) 423
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 2 cut(s) 321, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 4 cut(s) 368, 377, 434, 444
HspAI GCGC 2 cut(s) 362, 438
Kzo9I GATC 2 cut(s) 54, 182
LpnPI CCDG 3 cut(s) 31, 313, 340
LweI GCATC 4 cut(s) 137, 215, 330, 393
MaeI CTAG 2 cut(s) 180, 240
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 2 cut(s) 235, 385
MalI GATC 2 cut(s) 56, 184
MboI GATC 2 cut(s) 54, 182
MboII GAAGA 5 cut(s) 148, 163, 287, 408, 453
MflI RGATCY 1 cut(s) 182
MluCI AATT 4 cut(s) 17, 32, 228, 271
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 5 cut(s) 189, 255, 259, 303, 475
MroXI GAANNNNTTC 1 cut(s) 32
MseI TTAA 2 cut(s) 8, 453
MslI CAYNNNNRTG 1 cut(s) 88
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 370
NciI CCSGG 1 cut(s) 300
NdeII GATC 2 cut(s) 54, 182
NlaIII CATG 4 cut(s) 368, 377, 434, 444
NlaIV GGNNCC 3 cut(s) 145, 342, 513
NmuCI GTSAC 2 cut(s) 235, 385
NsbI TGCGCA 2 cut(s) 363, 439
NspI RCATGY 3 cut(s) 368, 434, 444
PciI ACATGT 1 cut(s) 430
PcsI WCGNNNNNNNCGW 1 cut(s) 344
PctI GAATGC 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 372
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PscI ACATGT 1 cut(s) 430
PspN4I GGNNCC 3 cut(s) 145, 342, 513
PspPI GGNCC 3 cut(s) 144, 341, 512
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 2 cut(s) 337, 353
RsaNI GTAC 2 cut(s) 336, 352
RseI CAYNNNNRTG 1 cut(s) 88
SaqAI TTAA 2 cut(s) 8, 453
SatI GCNGC 1 cut(s) 371
Sau3AI GATC 2 cut(s) 54, 182
Sau96I GGNCC 3 cut(s) 144, 341, 512
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 300
SetI ASST 4 cut(s) 103, 270, 350, 359
SfaNI GCATC 4 cut(s) 137, 215, 330, 393
SinI GGWCC 3 cut(s) 144, 341, 512
SmiMI CAYNNNNRTG 1 cut(s) 88
Sse9I AATT 4 cut(s) 17, 32, 228, 271
SsiI CCGC 2 cut(s) 371, 508
SspMI CTAG 2 cut(s) 180, 240
StyD4I CCNGG 1 cut(s) 298
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 350
TaqI TCGA 1 cut(s) 232
TaqII GACCGA 1 cut(s) 358
TasI AATT 4 cut(s) 17, 32, 228, 271
TatI WGTACW 1 cut(s) 351
TauI GCSGC 1 cut(s) 373
Tru1I TTAA 2 cut(s) 8, 453
Tru9I TTAA 2 cut(s) 8, 453
TseFI GTSAC 2 cut(s) 235, 385
Tsp45I GTSAC 2 cut(s) 235, 385
TspDTI ATGAA 2 cut(s) 464, 488
TspGWI ACGGA 1 cut(s) 206
VpaK11BI GGWCC 3 cut(s) 144, 341, 512
XapI RAATTY 2 cut(s) 32, 228
XceI RCATGY 3 cut(s) 368, 434, 444
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XmnI GAANNNNTTC 1 cut(s) 32
XspI CTAG 2 cut(s) 180, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.