FvH4_4g08910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000269
Physical Location & Seq
Reverse (-)
9843784 .. 9846792
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08910.t1

Sequence Viewer

Length: 1155 bp
ATGATGGTTTTGAAAGATGTGGAGAACTACTTGAAGAATAAAGAAGCACCGGTGGATGAGAAGTTCAAGCGGCTATTTGTGCTTTACACAATGTGCACAATCCTTACCCCTTCTGCCTCCTTAATGATACCACAGAAGTGGTTGCTGCCGCTGAGGGATACGAGCCTCATACGCACATACAACTGGTCTGAACACGCTTTCAAGTATTTGATGAAAGGAATTACTGAGTCAATGTACCCAGTTGAAGCTTGGGGGGATAGACAAGCCGACAAGGTTATGGCTTACACCAAAAGCAAAGGCGGGTTGATGTCTGCCCAAATAGAAGTGTGTAAGCCCGGTGATCGTGTTTGCGGAAGAAGTGAAGCAATTGATGAGGGATTGTCTCATAGGGTGGCTATTTTAGAGGAAAGCTTCAAGGAGTACAAGGAGTACAAAGCTCAGACATCAAAAAAGTTAGGGATGATACTGTCTGTGCTGGAAAAACTGGTGTCGCCGGAGCTGCCGACAAATAATTCAACACCCGTGGATATTTCATCTGAATCATCCGTGATCAGTCCATGTAGGTATATCTTTAAACCGAGTAAGAATGTTGAGACGGAAGCCTCATGCCAGAATGTTGAGAAACATAGGGATGAAGAAAAAATAATTGATCTTACTGACTCCTGCAAGAATGTTGAGAAGGAGGCCCTCTGCAAAAATGTTGAGAAACAGAAGGTTAGGGAGTTTAAGGTTGATGTTAACATGGATGTGAAAGACGAAGCAGTCCTGGACTATGTTTATAATGGAGTTGGCAGTGAATTGATTCTCGCTGAGTGCAATGGTCAGAGTTGTAAGAGGAGTAGTGCAAGGACTCTCCTACCGAACACATGGCTTAAAGATGAGGCTGGTACTGATGACTGCGGGATCTTTACAATCAAACACATGGAGCAGTATGGTGAAGAGTGGTGGACTGAGATTGAAGAGCCTCAGAACAATCAAGAGACTGAGAAGCGCGGAAAGAATGTACAAGTCCTGAAGCAAGTGAAGATTGAACCAACTGAGAGCAACACAAACGGAAAACCACAAGTGCACAGAACTGTAAAACCTCGCAACAGAACCGTAAAACCTCGCACCAGAAAGAGTAATGTCCAAAGTGTCCGCTGTAGCCGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

385

Amino Acids

44.02

Weight (kDa)

8.15

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AasI GACNNNNNNGTC 1 cut(s) 761
AccII CGCG 1 cut(s) 993
AciI CCGC 7 cut(s) 70, 149, 300, 351, 900, 993, 1138
AclWI GGATC 1 cut(s) 911
AcuI CTGAAG 1 cut(s) 1034
AdeI CACNNNGTG 1 cut(s) 93
AfaI GTAC 5 cut(s) 236, 422, 431, 889, 1005
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 9 cut(s) 13, 34, 67, 202, 245, 415, 516, 959, 1031
AjnI CCWGG 1 cut(s) 765
AleI CACNNNNGTG 1 cut(s) 136
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
AluBI AGCT 4 cut(s) 248, 411, 437, 499
AluI AGCT 4 cut(s) 248, 411, 437, 499
Alw21I GWGCWC 2 cut(s) 98, 1071
Alw26I GTCTC 3 cut(s) 387, 587, 974
Alw44I GTGCAC 2 cut(s) 94, 1067
AlwI GGATC 1 cut(s) 911
AoxI GGCC 1 cut(s) 684
ApaLI GTGCAC 2 cut(s) 94, 1067
ApeKI GCWGC 2 cut(s) 145, 499
AsiGI ACCGGT 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 801
AspLEI GCGC 1 cut(s) 993
AspS9I GGNCC 1 cut(s) 685
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 350, 947
BaeGI GKGCMC 2 cut(s) 98, 1071
Bbv12I GWGCWC 2 cut(s) 98, 1071
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 132, 486
BceAI ACGGC 1 cut(s) 1131
BciT130I CCWGG 1 cut(s) 767
BciVI GTATCC 1 cut(s) 151
BclI TGATCA 1 cut(s) 549
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 3 cut(s) 387, 587, 974
BfmI CTRYAG 1 cut(s) 1141
BfuI GTATCC 1 cut(s) 151
BisI GCNGC 4 cut(s) 71, 146, 149, 500
BlsI GCNGC 4 cut(s) 72, 147, 150, 501
Bme1390I CCNGG 2 cut(s) 336, 767
BmgT120I GGNCC 1 cut(s) 685
BmrFI CCNGG 2 cut(s) 336, 767
BmrI ACTGGG 1 cut(s) 233
BmuI ACTGGG 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 522
BsaWI WCCGGW 1 cut(s) 49
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 3 cut(s) 188, 239, 489
Bse3DI GCAATG 1 cut(s) 823
BseBI CCWGG 1 cut(s) 767
BseDI CCNNGG 1 cut(s) 522
BseGI GGATG 5 cut(s) 61, 465, 542, 637, 751
BseMI GCAATG 1 cut(s) 823
BseMII CTCAG 8 cut(s) 143, 216, 452, 801, 942, 975, 980, 1029
BseNI ACTGG 3 cut(s) 188, 239, 489
BseRI GAGGAG 1 cut(s) 850
BseSI GKGCMC 2 cut(s) 98, 1071
BseXI GCAGC 2 cut(s) 132, 486
Bsh1236I CGCG 1 cut(s) 993
BshFI GGCC 1 cut(s) 686
BshTI ACCGGT 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 98, 1071
BsiSI CCGG 3 cut(s) 50, 336, 494
BsmAI GTCTC 3 cut(s) 387, 587, 974
BsmBI CGTCTC 1 cut(s) 587
BsnI GGCC 1 cut(s) 686
Bsp1286I GDGCHC 2 cut(s) 98, 1071
Bsp1407I TGTACA 1 cut(s) 1003
Bsp143I GATC 4 cut(s) 340, 549, 649, 903
BspACI CCGC 7 cut(s) 70, 149, 300, 351, 900, 993, 1138
BspANI GGCC 1 cut(s) 686
BspCNI CTCAG 8 cut(s) 144, 217, 451, 802, 943, 976, 979, 1030
BspFNI CGCG 1 cut(s) 993
BspPI GGATC 1 cut(s) 911
BspQI GCTCTTC 1 cut(s) 954
BsrDI GCAATG 1 cut(s) 823
BsrFI RCCGGY 1 cut(s) 49
BsrGI TGTACA 1 cut(s) 1003
BsrI ACTGG 3 cut(s) 188, 239, 489
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 4 cut(s) 340, 549, 649, 903
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 3 cut(s) 468, 1078, 1099
Bst6I CTCTTC 2 cut(s) 933, 954
BstAUI TGTACA 1 cut(s) 1003
BstDEI CTNAG 8 cut(s) 152, 225, 438, 810, 951, 966, 984, 1038
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 5 cut(s) 61, 465, 542, 637, 751
BstFNI CGCG 1 cut(s) 993
BstHHI GCGC 1 cut(s) 993
BstKTI GATC 4 cut(s) 343, 552, 652, 906
BstMAI GTCTC 3 cut(s) 387, 587, 974
BstMBI GATC 4 cut(s) 340, 549, 649, 903
BstMWI GCNNNNNNNGC 3 cut(s) 79, 171, 499
BstNI CCWGG 1 cut(s) 767
BstSCI CCNGG 2 cut(s) 334, 765
BstSFI CTRYAG 1 cut(s) 1141
BstSLI GKGCMC 2 cut(s) 98, 1071
BstUI CGCG 1 cut(s) 993
BstV1I GCAGC 2 cut(s) 132, 486
BstX2I RGATCY 1 cut(s) 903
BstXI CCANNNNNNTGG 1 cut(s) 138
BstYI RGATCY 1 cut(s) 903
BsuI GTATCC 1 cut(s) 151
BsuRI GGCC 1 cut(s) 686
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 5 cut(s) 61, 465, 542, 637, 751
BtsI GCAGTG 1 cut(s) 799
BtsIMutI CAGTG 1 cut(s) 799
CfoI GCGC 1 cut(s) 993
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 685
Csp6I GTAC 5 cut(s) 235, 421, 430, 888, 1004
CspAI ACCGGT 1 cut(s) 49
CspCI CAANNNNNGTGG 2 cut(s) 504, 539
CviAII CATG 5 cut(s) 558, 606, 742, 867, 922
CviQI GTAC 5 cut(s) 235, 421, 430, 888, 1004
DdeI CTNAG 8 cut(s) 152, 225, 438, 810, 951, 966, 984, 1038
DpnI GATC 4 cut(s) 342, 551, 651, 905
DpnII GATC 4 cut(s) 340, 549, 649, 903
DraI TTTAAA 1 cut(s) 574
DraIII CACNNNGTG 1 cut(s) 93
DrdI GACNNNNNNGTC 1 cut(s) 761
DseDI GACNNNNNNGTC 1 cut(s) 761
Eam1104I CTCTTC 2 cut(s) 933, 954
EarI CTCTTC 2 cut(s) 933, 954
Eco57I CTGAAG 1 cut(s) 1034
EcoO109I RGGNCCY 1 cut(s) 685
EcoRII CCWGG 1 cut(s) 765
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 5 cut(s) 561, 609, 745, 870, 925
FatI CATG 5 cut(s) 557, 605, 741, 866, 921
FauI CCCGC 2 cut(s) 293, 893
FbaI TGATCA 1 cut(s) 549
Fnu4HI GCNGC 4 cut(s) 71, 146, 149, 500
FokI GGATG 5 cut(s) 68, 472, 529, 644, 758
Fsp4HI GCNGC 4 cut(s) 71, 146, 149, 500
GlaI GCGC 1 cut(s) 992
GluI GCNGC 4 cut(s) 71, 146, 149, 500
HaeIII GGCC 1 cut(s) 686
HapII CCGG 3 cut(s) 50, 336, 494
HhaI GCGC 1 cut(s) 993
Hin1II CATG 5 cut(s) 561, 609, 745, 870, 925
Hin6I GCGC 1 cut(s) 991
HinP1I GCGC 1 cut(s) 991
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 2 cut(s) 246, 409
HinfI GANTC 5 cut(s) 227, 539, 659, 802, 850
HpaI GTTAAC 1 cut(s) 739
HpaII CCGG 3 cut(s) 50, 336, 494
HphI GGTGA 2 cut(s) 350, 947
Hpy166II GTNNAC 4 cut(s) 96, 739, 948, 1069
Hpy188I TCNGA 5 cut(s) 190, 441, 538, 825, 969
Hpy188III TCNNGA 2 cut(s) 977, 1012
Hpy8I GTNNAC 4 cut(s) 96, 739, 948, 1069
HpyAV CCTTC 3 cut(s) 120, 673, 706
HpyCH4III ACNGT 3 cut(s) 468, 1078, 1099
HpyCH4V TGCA 6 cut(s) 96, 666, 693, 816, 845, 1069
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 171, 499
HpyF3I CTNAG 8 cut(s) 152, 225, 438, 810, 951, 966, 984, 1038
Hsp92II CATG 5 cut(s) 561, 609, 745, 870, 925
HspAI GCGC 1 cut(s) 991
Ksp22I TGATCA 1 cut(s) 549
KspAI GTTAAC 1 cut(s) 739
Kzo9I GATC 4 cut(s) 340, 549, 649, 903
LguI GCTCTTC 1 cut(s) 954
LmnI GCTCC 2 cut(s) 496, 925
Lsp1109I GCAGC 2 cut(s) 132, 486
MalI GATC 4 cut(s) 342, 551, 651, 905
MboI GATC 4 cut(s) 340, 549, 649, 903
MboII GAAGA 6 cut(s) 46, 366, 647, 950, 971, 1036
MfeI CAATTG 1 cut(s) 366
MflI RGATCY 1 cut(s) 903
MhlI GDGCHC 2 cut(s) 98, 1071
MluCI AATT 5 cut(s) 219, 366, 511, 645, 797
MlyI GAGTC 3 cut(s) 236, 653, 844
MroXI GAANNNNTTC 1 cut(s) 801
MseI TTAA 5 cut(s) 122, 573, 726, 738, 873
MslI CAYNNNNRTG 3 cut(s) 136, 630, 746
MspA1I CMGCKG 2 cut(s) 151, 1140
MspI CCGG 3 cut(s) 50, 336, 494
MspR9I CCNGG 2 cut(s) 336, 767
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 767
MvnI CGCG 1 cut(s) 993
MwoI GCNNNNNNNGC 3 cut(s) 79, 171, 499
NciI CCSGG 1 cut(s) 336
NdeII GATC 4 cut(s) 340, 549, 649, 903
NlaIII CATG 5 cut(s) 561, 609, 745, 870, 925
OliI CACNNNNGTG 1 cut(s) 136
PciSI GCTCTTC 1 cut(s) 954
PdmI GAANNNNTTC 1 cut(s) 801
PfeI GAWTC 2 cut(s) 539, 802
PfoI TCCNGGA 1 cut(s) 765
PinAI ACCGGT 1 cut(s) 49
PkrI GCNGC 4 cut(s) 72, 147, 150, 501
PleI GAGTC 3 cut(s) 235, 653, 844
PpsI GAGTC 3 cut(s) 235, 653, 844
PsiI TTATAA 1 cut(s) 780
Psp6I CCWGG 1 cut(s) 765
PspGI CCWGG 1 cut(s) 765
PspPI GGNCC 1 cut(s) 685
PsuI RGATCY 1 cut(s) 903
RsaI GTAC 5 cut(s) 236, 422, 431, 889, 1005
RsaNI GTAC 5 cut(s) 235, 421, 430, 888, 1004
RseI CAYNNNNRTG 3 cut(s) 136, 630, 746
SapI GCTCTTC 1 cut(s) 954
SaqAI TTAA 5 cut(s) 122, 573, 726, 738, 873
SatI GCNGC 4 cut(s) 71, 146, 149, 500
Sau3AI GATC 4 cut(s) 340, 549, 649, 903
Sau96I GGNCC 1 cut(s) 685
SchI GAGTC 3 cut(s) 236, 653, 844
ScrFI CCNGG 2 cut(s) 336, 767
SduI GDGCHC 2 cut(s) 98, 1071
SfcI CTRYAG 1 cut(s) 1141
SgrAI CRCCGGYG 1 cut(s) 49
SmiMI CAYNNNNRTG 3 cut(s) 136, 630, 746
Sse9I AATT 5 cut(s) 219, 366, 511, 645, 797
SsiI CCGC 7 cut(s) 70, 149, 300, 351, 900, 993, 1138
StyD4I CCNGG 2 cut(s) 334, 765
TaaI ACNGT 3 cut(s) 468, 1078, 1099
TasI AATT 5 cut(s) 219, 366, 511, 645, 797
TatI WGTACW 3 cut(s) 420, 429, 1003
TauI GCSGC 2 cut(s) 73, 151
TfiI GAWTC 2 cut(s) 539, 802
Tru1I TTAA 5 cut(s) 122, 573, 726, 738, 873
Tru9I TTAA 5 cut(s) 122, 573, 726, 738, 873
TscAI CASTG 1 cut(s) 799
TseI GCWGC 2 cut(s) 145, 499
TspDTI ATGAA 3 cut(s) 227, 522, 648
TspGWI ACGGA 3 cut(s) 535, 611, 1068
TspRI CASTG 1 cut(s) 799
VneI GTGCAC 2 cut(s) 94, 1067
XcmI CCANNNNNNNNNTGG 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.