FvH4_3g26551

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000269
Physical Location & Seq
Forward (+)
19629167 .. 19630771
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26551.t1

Sequence Viewer

Length: 1347 bp
ATGGGGAAGAATGTTGAGAAGGAAGCCTCAGAAGAGAATGTTGAGAAACAGAGGGATGAAATAAATGATCTTACTGACCCCTTTCAAAATATTGAGAAGGAGGCCTCATGCAAGAAAGTTGATAAACAGAGGGATGAAAAAATAATTGATCTTACTGACCCCTGCCAGAATGTTGAGAATGAGACCTCATGTAAGAAAGTTGATAAAGAGAGGGATGAAAAAATAATTGATCTTACTGACCCCTGCCAGAATGTTGAGAAGGAGGCCTCATGCAAGAAAGTTGATAAACAGAGGGATGAAAAAATAATTGATCTTACTGACCCCTGCCAGAATGTTGAAAAGGAGACCTCATGCAAGAAAGTTGAGAAACAGAAGGTTAGGGAGTTTAAGTTTGATGTTAACATAGATGTGGATGACGAAGCAGTCCTGGACTATGTATATAATGGAGTTGACAGTGAATTGATTCTCGCTGAGTGCAATGGTCAGAGTTGTAAGAGGAGTAGTGTCAAGACTCTCCTACCGAACACATGGCTTAACGATGAGGTTGTGACCATATTTGCCTCTTATCTACTAGCATGGAGCACTGGTGACAATGTTTATTTCCACACTTTTTTCAGCAAGAAGCTACAATCATACTGTACGTATGAAAAACCGTTAGGAAAAGTTCCTACTCCAAAGAAGATGTGGGTAAAAAGTTACAGTGAATACCTTCCTCATTGCAAAAAGATGTTCATACCAATTCATGACTCAGATCATTGGTATCTCTTTGTTGTGCGTATAGATAACGAGACAGGAGAATACTGGGATAGCCTTGGAGACAAAAAATCACGCAAGGATTACTGCAAAGATATTCTAAAAGTCTTTGACATTATTTTCGGCCATCTTGTGAAGAAGACTAAGAAATTTGAAGATTTTCCCATTTTTAAGCCACCACAATGTCCTAAACAAGAGGGTACTGATGACTACGGGATCTTTACAATCAAACACATGGAGCAGTATGGTGAAGAGTGGTGGACCGAGTATAACTCAAAAGAGGTTCGCAAAGAGCTAACCTTGAAATTAATAAGGAACGGATACAACAGTAGATGGCAAATGATGTGTAGAAACATCAAAAAAAGATTAAATAATAAGAAATTGGAAAACAAGATTGAAGAGCCTCAGAACAATCAAGAGGCTGAGAAGTGCGGAAACAATGTACAAGTCCTGAAGCAAGTGCAGATTGAACCGACCGAGAGCAACACAAACAGAAAACCACAAGTGCACGGAACTGTAAAATCTCGCAACAGAACCGTAAAACCTCGCACCATAAAGAGTAATGTCCAAAGTGTCCACCGTAGCCGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

449

Amino Acids

52.76

Weight (kDa)

7.78

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 177 - 333 1.1e-14 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 422
AciI CCGC 1 cut(s) 1185
AclWI GGATC 1 cut(s) 977
AcoI YGGCCR 1 cut(s) 877
AcsI RAATTY 1 cut(s) 902
AcuI CTGAAG 1 cut(s) 1226
AfaI GTAC 3 cut(s) 640, 955, 1197
AgsI TTSAA 6 cut(s) 86, 338, 908, 1057, 1151, 1223
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 2 cut(s) 625, 1048
AluI AGCT 2 cut(s) 625, 1048
Alw21I GWGCWC 2 cut(s) 584, 1263
Alw26I GTCTC 4 cut(s) 176, 338, 782, 810
Alw44I GTGCAC 1 cut(s) 1259
AlwI GGATC 1 cut(s) 977
AoxI GGCC 3 cut(s) 102, 264, 877
ApaLI GTGCAC 1 cut(s) 1259
ApoI RAATTY 1 cut(s) 902
ArsI GACNNNNNNTTYG 2 cut(s) 857, 889
AseI ATTAAT 1 cut(s) 1061
Asp700I GAANNNNTTC 3 cut(s) 462, 708, 912
AspS9I GGNCC 1 cut(s) 1014
AsuHPI GGTGA 2 cut(s) 599, 1013
AvaII GGWCC 1 cut(s) 1014
BaeGI GKGCMC 1 cut(s) 1263
BaeI ACNNNNGTAYC 2 cut(s) 1066, 1099
BbsI GAAGAC 1 cut(s) 899
Bbv12I GWGCWC 2 cut(s) 584, 1263
BccI CCATC 2 cut(s) 888, 1080
BceAI ACGGC 1 cut(s) 1323
BciT130I CCWGG 1 cut(s) 428
BciVI GTATCC 1 cut(s) 1067
BcoDI GTCTC 4 cut(s) 176, 338, 782, 810
BfaI CTAG 1 cut(s) 572
BfuI GTATCC 1 cut(s) 1067
Bme1390I CCNGG 1 cut(s) 428
Bme18I GGWCC 1 cut(s) 1014
BmgT120I GGNCC 1 cut(s) 1014
BmrFI CCNGG 1 cut(s) 428
BmrI ACTGGG 1 cut(s) 811
BmuI ACTGGG 1 cut(s) 811
BpiI GAAGAC 1 cut(s) 899
BplI GAGNNNNNCTC 2 cut(s) 1010, 1042
BsaAI YACGTR 1 cut(s) 642
BsaI GGTCTC 2 cut(s) 176, 338
BsaJI CCNNGG 1 cut(s) 811
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 571, 601
Bse1I ACTGG 2 cut(s) 589, 806
Bse3DI GCAATG 2 cut(s) 484, 715
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 1 cut(s) 811
BseGI GGATG 5 cut(s) 61, 139, 220, 301, 418
BseMI GCAATG 2 cut(s) 484, 715
BseMII CTCAG 5 cut(s) 42, 462, 762, 1167, 1172
BseNI ACTGG 2 cut(s) 589, 806
BseRI GAGGAG 1 cut(s) 511
BseSI GKGCMC 1 cut(s) 1263
BsgI GTGCAG 1 cut(s) 1235
Bsh1285I CGRYCG 1 cut(s) 1230
BshFI GGCC 3 cut(s) 104, 266, 879
BsiEI CGRYCG 1 cut(s) 1230
BsiHKAI GWGCWC 2 cut(s) 584, 1263
BsmAI GTCTC 4 cut(s) 176, 338, 782, 810
BsnI GGCC 3 cut(s) 104, 266, 879
Bso31I GGTCTC 2 cut(s) 176, 338
Bsp1286I GDGCHC 2 cut(s) 584, 1263
Bsp1407I TGTACA 1 cut(s) 1195
Bsp143I GATC 6 cut(s) 67, 148, 229, 310, 751, 969
BspACI CCGC 1 cut(s) 1185
BspANI GGCC 3 cut(s) 104, 266, 879
BspCNI CTCAG 5 cut(s) 41, 463, 761, 1168, 1171
BspHI TCATGA 1 cut(s) 742
BspPI GGATC 1 cut(s) 977
BspQI GCTCTTC 1 cut(s) 1146
BspTNI GGTCTC 2 cut(s) 176, 338
BsrDI GCAATG 2 cut(s) 484, 715
BsrGI TGTACA 1 cut(s) 1195
BsrI ACTGG 2 cut(s) 589, 806
BssECI CCNNGG 1 cut(s) 811
BssMI GATC 6 cut(s) 67, 148, 229, 310, 751, 969
BssT1I CCWWGG 1 cut(s) 811
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 8 cut(s) 455, 638, 654, 701, 1082, 1270, 1291, 1334
Bst6I CTCTTC 3 cut(s) 27, 999, 1146
BstAUI TGTACA 1 cut(s) 1195
BstBAI YACGTR 1 cut(s) 642
BstDEI CTNAG 6 cut(s) 28, 471, 748, 897, 1158, 1176
BstF5I GGATG 5 cut(s) 61, 139, 220, 301, 418
BstKTI GATC 6 cut(s) 70, 151, 232, 313, 754, 972
BstMAI GTCTC 4 cut(s) 176, 338, 782, 810
BstMBI GATC 6 cut(s) 67, 148, 229, 310, 751, 969
BstMCI CGRYCG 1 cut(s) 1230
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 1263
BstSNI TACGTA 1 cut(s) 642
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 1 cut(s) 969
BstYI RGATCY 1 cut(s) 969
BsuI GTATCC 1 cut(s) 1067
BsuRI GGCC 3 cut(s) 104, 266, 879
BtsCI GGATG 5 cut(s) 61, 139, 220, 301, 418
BtsIMutI CAGTG 3 cut(s) 460, 582, 706
CciI TCATGA 1 cut(s) 742
Cfr13I GGNCC 1 cut(s) 1014
Csp6I GTAC 3 cut(s) 639, 954, 1196
CviAII CATG 8 cut(s) 108, 189, 270, 351, 528, 576, 743, 988
CviQI GTAC 3 cut(s) 639, 954, 1196
DdeI CTNAG 6 cut(s) 28, 471, 748, 897, 1158, 1176
DpnI GATC 6 cut(s) 69, 150, 231, 312, 753, 971
DpnII GATC 6 cut(s) 67, 148, 229, 310, 751, 969
DrdI GACNNNNNNGTC 1 cut(s) 422
DseDI GACNNNNNNGTC 1 cut(s) 422
EaeI YGGCCR 1 cut(s) 877
Eam1104I CTCTTC 3 cut(s) 27, 999, 1146
EarI CTCTTC 3 cut(s) 27, 999, 1146
Eco105I TACGTA 1 cut(s) 642
Eco130I CCWWGG 1 cut(s) 811
Eco147I AGGCCT 2 cut(s) 104, 266
Eco31I GGTCTC 2 cut(s) 176, 338
Eco47I GGWCC 1 cut(s) 1014
Eco57I CTGAAG 1 cut(s) 1226
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 811
FaeI CATG 8 cut(s) 111, 192, 273, 354, 531, 579, 746, 991
FatI CATG 8 cut(s) 107, 188, 269, 350, 527, 575, 742, 987
FokI GGATG 5 cut(s) 68, 146, 227, 308, 425
FspBI CTAG 1 cut(s) 572
HaeIII GGCC 3 cut(s) 104, 266, 879
Hin1II CATG 8 cut(s) 111, 192, 273, 354, 531, 579, 746, 991
HincII GTYRAC 2 cut(s) 400, 451
HindII GTYRAC 2 cut(s) 400, 451
HinfI GANTC 3 cut(s) 463, 511, 746
HpaI GTTAAC 1 cut(s) 400
HphI GGTGA 2 cut(s) 599, 1013
Hpy166II GTNNAC 5 cut(s) 400, 451, 1014, 1261, 1330
Hpy188I TCNGA 4 cut(s) 31, 486, 751, 1161
Hpy188III TCNNGA 4 cut(s) 508, 743, 1169, 1204
Hpy8I GTNNAC 5 cut(s) 400, 451, 1014, 1261, 1330
HpyAV CCTTC 5 cut(s) 13, 91, 253, 367, 719
HpyCH4III ACNGT 8 cut(s) 455, 638, 654, 701, 1082, 1270, 1291, 1334
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 8 cut(s) 111, 273, 354, 477, 720, 843, 1216, 1261
HpyF3I CTNAG 6 cut(s) 28, 471, 748, 897, 1158, 1176
HpySE526I ACGT 1 cut(s) 641
Hsp92II CATG 8 cut(s) 111, 192, 273, 354, 531, 579, 746, 991
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 6 cut(s) 67, 148, 229, 310, 751, 969
LguI GCTCTTC 1 cut(s) 1146
LmnI GCTCC 2 cut(s) 579, 991
MaeI CTAG 1 cut(s) 572
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 3 cut(s) 547, 587, 695
MalI GATC 6 cut(s) 69, 150, 231, 312, 753, 971
MboI GATC 6 cut(s) 67, 148, 229, 310, 751, 969
MboII GAAGA 8 cut(s) 19, 44, 691, 901, 904, 920, 1016, 1163
MflI RGATCY 1 cut(s) 969
MhlI GDGCHC 2 cut(s) 584, 1263
MluCI AATT 8 cut(s) 144, 225, 306, 458, 738, 902, 1058, 1133
MlyI GAGTC 2 cut(s) 505, 740
MroXI GAANNNNTTC 3 cut(s) 462, 708, 912
MseI TTAA 6 cut(s) 387, 399, 534, 924, 1061, 1121
MslI CAYNNNNRTG 2 cut(s) 407, 934
MspR9I CCNGG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 428
NdeII GATC 6 cut(s) 67, 148, 229, 310, 751, 969
NlaIII CATG 8 cut(s) 111, 192, 273, 354, 531, 579, 746, 991
NmuCI GTSAC 2 cut(s) 547, 587
PagI TCATGA 1 cut(s) 742
PceI AGGCCT 2 cut(s) 104, 266
PciSI GCTCTTC 1 cut(s) 1146
PdmI GAANNNNTTC 3 cut(s) 462, 708, 912
PfeI GAWTC 1 cut(s) 463
PfoI TCCNGGA 1 cut(s) 426
PleI GAGTC 2 cut(s) 505, 740
PpsI GAGTC 2 cut(s) 505, 740
Ppu21I YACGTR 1 cut(s) 642
PshBI ATTAAT 1 cut(s) 1061
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PspPI GGNCC 1 cut(s) 1014
PsuI RGATCY 1 cut(s) 969
RsaI GTAC 3 cut(s) 640, 955, 1197
RsaNI GTAC 3 cut(s) 639, 954, 1196
RseI CAYNNNNRTG 2 cut(s) 407, 934
SapI GCTCTTC 1 cut(s) 1146
SaqAI TTAA 6 cut(s) 387, 399, 534, 924, 1061, 1121
Sau3AI GATC 6 cut(s) 67, 148, 229, 310, 751, 969
Sau96I GGNCC 1 cut(s) 1014
SchI GAGTC 2 cut(s) 505, 740
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 2 cut(s) 584, 1263
SinI GGWCC 1 cut(s) 1014
SmiMI CAYNNNNRTG 2 cut(s) 407, 934
SnaBI TACGTA 1 cut(s) 642
Sse9I AATT 8 cut(s) 144, 225, 306, 458, 738, 902, 1058, 1133
SseBI AGGCCT 2 cut(s) 104, 266
SsiI CCGC 1 cut(s) 1185
SspI AATATT 1 cut(s) 91
SspMI CTAG 1 cut(s) 572
StuI AGGCCT 2 cut(s) 104, 266
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 8 cut(s) 455, 638, 654, 701, 1082, 1270, 1291, 1334
TaiI ACGT 1 cut(s) 644
TaqII GACCGA 2 cut(s) 1031, 1244
TasI AATT 8 cut(s) 144, 225, 306, 458, 738, 902, 1058, 1133
TatI WGTACW 1 cut(s) 1195
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 6 cut(s) 387, 399, 534, 924, 1061, 1121
Tru9I TTAA 6 cut(s) 387, 399, 534, 924, 1061, 1121
TscAI CASTG 3 cut(s) 460, 589, 706
TseFI GTSAC 2 cut(s) 547, 587
Tsp45I GTSAC 2 cut(s) 547, 587
TspDTI ATGAA 7 cut(s) 72, 150, 231, 312, 660, 721, 731
TspGWI ACGGA 2 cut(s) 1086, 1278
TspRI CASTG 3 cut(s) 460, 589, 706
VneI GTGCAC 1 cut(s) 1259
VpaK11BI GGWCC 1 cut(s) 1014
VspI ATTAAT 1 cut(s) 1061
XapI RAATTY 1 cut(s) 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 681
XmnI GAANNNNTTC 3 cut(s) 462, 708, 912
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.