Rh2BG471200

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000269
Physical Location & Seq
Reverse (-)
66522581 .. 66524291
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG471200.1

Sequence Viewer

Length: 870 bp
ATGTCTGACTTGGCTGCTAAAGTGAATGGGTTGGAAAATAATATATGCAATCTGAGAGATGATATGATGGGAAAGATGGACAAAGTCTTGAGTATGATAAACACTCTGACTGCACAAAATGTGAATGTCAATCAGAACCTTCAAACTGATGGCTTAGCAGAAAAAGTAAGCCCCAAGAAAGTTTCAAAAAAGAAAGCTGGAGAGCAACAGGAGGTGTTACAGGTACATAGGGAAGACTTGCAAACAAAAAAGAAGACCTCCTTGATTTGCCTATCTGACTCAACATTTGTAGTTAGCCCACTGAAAAGTATGAAGAAAGTTGATGCCAACCCCACGACCAAGAGTAACATAGAGAAGATTGGTAACTTCAAAGTCATGGGAGATCAGGAGGAGGCTGACAAAGGAGTGCTCAGGTTTGTTTATAATGTGTCAGCTGAAGAGAAGGAGACTATTGTGGATAGTGAAAGTTTCTTCACTAGTCGAAAAGCAGTTTGGTCACATAAACCTAACGGAAAGATGAAAAGTTACAATGACAGAGACATGTGTGGAGATTCGGCTAGGGCAATTTCGAAGGGTTTGGGTGTAAAGAGATTTGAGAACGGCATCCCTGAGTGCGAGAAGTTGCAAACACTGGACATTATCTACCACCATGTGGAGTTCACAGTCAAGAATGTTGTGAAGAAGTTTGCTAACTTCTATGTATTCGAGCCGGCTCAATGCCCTAAACAAGAGGGCGGTTCTGACTGTGGGGTGTATGTGATCAAACACATGCACTGTTATGGATCTGAGTGGTGGCATCAGTTTAACTCAGAAGAGGTACGCATGGACTTAACCATTGAATTGGTGAGGAACAAATTCAATGAGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

289

Amino Acids

32.78

Weight (kDa)

8.02

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AccB7I CCANNNNNTGG 1 cut(s) 652
AciI CCGC 1 cut(s) 735
AclWI GGATC 1 cut(s) 790
AcsI RAATTY 1 cut(s) 854
AcuI CTGAAG 1 cut(s) 456
AdeI CACNNNGTG 1 cut(s) 652
AfaI GTAC 2 cut(s) 225, 819
AfiI CCNNNNNNNGG 1 cut(s) 652
AflIII ACRYGT 1 cut(s) 540
AgsI TTSAA 5 cut(s) 143, 186, 370, 839, 859
AhlI ACTAGT 1 cut(s) 476
AjuI GAANNNNNNNTTGG 2 cut(s) 475, 507
AluBI AGCT 2 cut(s) 197, 434
AluI AGCT 2 cut(s) 197, 434
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 440, 531
AlwI GGATC 1 cut(s) 790
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 854
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
Asp700I GAANNNNTTC 1 cut(s) 854
AsuHPI GGTGA 1 cut(s) 856
AsuII TTCGAA 1 cut(s) 569
BbsI GAAGAC 2 cut(s) 240, 260
Bbv12I GWGCWC 1 cut(s) 411
BccI CCATC 3 cut(s) 61, 70, 143
BceAI ACGGC 1 cut(s) 616
BclI TGATCA 1 cut(s) 759
BcoDI GTCTC 2 cut(s) 440, 531
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 3 cut(s) 477, 558, 868
BisI GCNGC 1 cut(s) 15
BlpI GCTNAGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 16
BmsI GCATC 3 cut(s) 313, 612, 805
BpiI GAAGAC 2 cut(s) 240, 260
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 1 cut(s) 636
BseGI GGATG 1 cut(s) 603
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMII CTCAG 5 cut(s) 44, 424, 600, 777, 822
BseNI ACTGG 1 cut(s) 636
BseRI GAGGAG 1 cut(s) 404
BsgI GTGCAG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 1 cut(s) 710
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 2 cut(s) 440, 531
Bsp119I TTCGAA 1 cut(s) 569
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 3 cut(s) 382, 759, 782
Bsp1720I GCTNAGC 1 cut(s) 154
BspACI CCGC 1 cut(s) 735
BspCNI CTCAG 5 cut(s) 45, 423, 601, 778, 821
BspPI GGATC 1 cut(s) 790
BspT104I TTCGAA 1 cut(s) 569
BsrFI RCCGGY 1 cut(s) 709
BsrI ACTGG 1 cut(s) 636
BssAI RCCGGY 1 cut(s) 709
BssMI GATC 3 cut(s) 382, 759, 782
Bst4CI ACNGT 3 cut(s) 664, 746, 776
Bst6I CTCTTC 2 cut(s) 432, 807
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 6 cut(s) 53, 154, 410, 609, 786, 808
BstF5I GGATG 1 cut(s) 603
BstKTI GATC 3 cut(s) 385, 762, 785
BstMAI GTCTC 2 cut(s) 440, 531
BstMBI GATC 3 cut(s) 382, 759, 782
BstNSI RCATGY 2 cut(s) 544, 772
BstV2I GAAGAC 2 cut(s) 240, 260
BstX2I RGATCY 1 cut(s) 782
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 1 cut(s) 782
BtsCI GGATG 1 cut(s) 603
BtsIMutI CAGTG 3 cut(s) 299, 629, 772
Cac8I GCNNGC 1 cut(s) 711
Cfr10I RCCGGY 1 cut(s) 709
Csp6I GTAC 2 cut(s) 224, 818
CviAII CATG 5 cut(s) 376, 541, 650, 769, 823
CviQI GTAC 2 cut(s) 224, 818
DdeI CTNAG 6 cut(s) 53, 154, 410, 609, 786, 808
DpnI GATC 3 cut(s) 384, 761, 784
DpnII GATC 3 cut(s) 382, 759, 782
DraIII CACNNNGTG 1 cut(s) 652
Eam1104I CTCTTC 2 cut(s) 432, 807
EarI CTCTTC 2 cut(s) 432, 807
Eco57I CTGAAG 1 cut(s) 456
FaeI CATG 5 cut(s) 379, 544, 653, 772, 826
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FatI CATG 5 cut(s) 375, 540, 649, 768, 822
FbaI TGATCA 1 cut(s) 759
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 590
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 3 cut(s) 477, 558, 868
GluI GCNGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 219
HapII CCGG 1 cut(s) 710
Hin1II CATG 5 cut(s) 379, 544, 653, 772, 826
HinfI GANTC 2 cut(s) 278, 551
HpaII CCGG 1 cut(s) 710
HphI GGTGA 1 cut(s) 856
Hpy166II GTNNAC 1 cut(s) 660
Hpy188I TCNGA 8 cut(s) 7, 54, 108, 135, 277, 742, 787, 811
Hpy188III TCNNGA 3 cut(s) 88, 386, 667
Hpy8I GTNNAC 1 cut(s) 660
HpyAV CCTTC 3 cut(s) 149, 436, 565
HpyCH4III ACNGT 3 cut(s) 664, 746, 776
HpyCH4V TGCA 5 cut(s) 48, 113, 241, 625, 772
HpyF3I CTNAG 6 cut(s) 53, 154, 410, 609, 786, 808
Hsp92II CATG 5 cut(s) 379, 544, 653, 772, 826
KroI GCCGGC 1 cut(s) 709
KroNI GCCGGC 1 cut(s) 711
Ksp22I TGATCA 1 cut(s) 759
Kzo9I GATC 3 cut(s) 382, 759, 782
LpnPI CCDG 8 cut(s) 183, 194, 206, 371, 397, 617, 621, 723
LweI GCATC 3 cut(s) 313, 612, 805
MaeI CTAG 3 cut(s) 477, 558, 868
MaeIII GTNAC 5 cut(s) 216, 344, 362, 495, 524
MalI GATC 3 cut(s) 384, 761, 784
MboI GATC 3 cut(s) 382, 759, 782
MboII GAAGA 8 cut(s) 245, 265, 325, 367, 449, 463, 691, 824
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 1 cut(s) 411
MluCI AATT 3 cut(s) 564, 839, 854
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 7 cut(s) 205, 268, 382, 385, 724, 808, 840
MroNI GCCGGC 1 cut(s) 709
MroXI GAANNNNTTC 1 cut(s) 854
MseI TTAA 2 cut(s) 804, 830
MslI CAYNNNNRTG 1 cut(s) 777
MspA1I CMGCKG 1 cut(s) 434
MspI CCGG 1 cut(s) 710
NaeI GCCGGC 1 cut(s) 711
NdeII GATC 3 cut(s) 382, 759, 782
NgoMIV GCCGGC 1 cut(s) 709
NlaIII CATG 5 cut(s) 379, 544, 653, 772, 826
NmuCI GTSAC 1 cut(s) 495
NspI RCATGY 2 cut(s) 544, 772
NspV TTCGAA 1 cut(s) 569
PciI ACATGT 1 cut(s) 540
PdiI GCCGGC 1 cut(s) 711
PdmI GAANNNNTTC 1 cut(s) 854
PfeI GAWTC 1 cut(s) 551
PflFI GACNNNGTC 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 652
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PscI ACATGT 1 cut(s) 540
PsiI TTATAA 1 cut(s) 423
PsuI RGATCY 1 cut(s) 782
PsyI GACNNNGTC 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 2 cut(s) 225, 819
RsaNI GTAC 2 cut(s) 224, 818
RseI CAYNNNNRTG 1 cut(s) 777
SaqAI TTAA 2 cut(s) 804, 830
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 3 cut(s) 382, 759, 782
SchI GAGTC 1 cut(s) 272
SduI GDGCHC 1 cut(s) 411
SetI ASST 9 cut(s) 141, 199, 216, 225, 260, 416, 436, 508, 819
SfaNI GCATC 3 cut(s) 313, 612, 805
SfuI TTCGAA 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 3 cut(s) 564, 839, 854
SsiI CCGC 1 cut(s) 735
SspMI CTAG 3 cut(s) 477, 558, 868
TaaI ACNGT 3 cut(s) 664, 746, 776
TaqI TCGA 3 cut(s) 481, 569, 705
TasI AATT 3 cut(s) 564, 839, 854
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 2 cut(s) 804, 830
Tru9I TTAA 2 cut(s) 804, 830
TscAI CASTG 3 cut(s) 306, 636, 779
TseFI GTSAC 1 cut(s) 495
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 495
TspDTI ATGAA 2 cut(s) 326, 533
TspGWI ACGGA 1 cut(s) 525
TspRI CASTG 3 cut(s) 306, 636, 779
Tth111I GACNNNGTC 1 cut(s) 83
Van91I CCANNNNNTGG 1 cut(s) 652
XapI RAATTY 1 cut(s) 854
XceI RCATGY 2 cut(s) 544, 772
XmnI GAANNNNTTC 1 cut(s) 854
XspI CTAG 3 cut(s) 477, 558, 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.