FvH4_5g16042

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000269
Physical Location & Seq
Reverse (-)
9116248 .. 9116817
570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16042.t1

Sequence Viewer

Length: 438 bp
ATGGGGAAGAATGTTGAGAATGAAGCCTCAGAAGAGAATGTTGAGAAACAGAGGGATGAAATAAATGATCTTACTGACCCCTTTCAGAATGTTGAGAAGGAGGCCTCATGCTTGAATGTTGAGAAACAGAAGGTAATTGATCTTACTGACCCCTTTCAGAATGTTGAGAAGGAGGCCTCATGCAAGAAAAATGTTGAAAAGGAGGCCTCATGCAAGAAAGTTGAGAAAAAGAAGGTTAGGGAGTTTAAGGTTGATGTTAACATGGATGTGGATGATGAAGCAGTCCTGGACTATGTATATAATGGAGTTGGCAGTGAATTGATTCTAGTTGAGTGCAATGGTCAGAGTTGTAAGAGGAGTAGTGCCAACACTCTCCTACCGAACACATGGCTTAACGATGAGATTGTGACCATATTTGCCTCTTATCTTATCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.5

Weight (kDa)

4.56

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 115, 197
AjnI CCWGG 1 cut(s) 285
AoxI GGCC 3 cut(s) 102, 174, 204
Asp700I GAANNNNTTC 1 cut(s) 321
BciT130I CCWGG 1 cut(s) 287
BfaI CTAG 2 cut(s) 326, 436
Bme1390I CCNGG 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 287
BseGI GGATG 3 cut(s) 61, 271, 277
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 370
BshFI GGCC 3 cut(s) 104, 176, 206
BsnI GGCC 3 cut(s) 104, 176, 206
Bsp143I GATC 2 cut(s) 67, 139
BspANI GGCC 3 cut(s) 104, 176, 206
BspCNI CTCAG 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 343
BssMI GATC 2 cut(s) 67, 139
Bst2UI CCWGG 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 28
BstF5I GGATG 3 cut(s) 61, 271, 277
BstKTI GATC 2 cut(s) 70, 142
BstMBI GATC 2 cut(s) 67, 139
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BsuRI GGCC 3 cut(s) 104, 176, 206
BtsCI GGATG 3 cut(s) 61, 271, 277
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 319
CviAII CATG 5 cut(s) 108, 180, 210, 262, 387
CviJI RGCY 5 cut(s) 26, 104, 176, 206, 391
CviKI_1 RGCY 5 cut(s) 26, 104, 176, 206, 391
DdeI CTNAG 1 cut(s) 28
DpnI GATC 2 cut(s) 69, 141
DpnII GATC 2 cut(s) 67, 139
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco147I AGGCCT 3 cut(s) 104, 176, 206
EcoRII CCWGG 1 cut(s) 285
FaeI CATG 5 cut(s) 111, 183, 213, 265, 390
FaiI YATR 9 cut(s) 109, 181, 211, 263, 294, 298, 300, 388, 413
FatI CATG 5 cut(s) 107, 179, 209, 261, 386
FokI GGATG 3 cut(s) 68, 278, 284
FspBI CTAG 2 cut(s) 326, 436
HaeIII GGCC 3 cut(s) 104, 176, 206
Hin1II CATG 5 cut(s) 111, 183, 213, 265, 390
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HinfI GANTC 1 cut(s) 322
HpaI GTTAAC 1 cut(s) 259
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 4 cut(s) 31, 87, 159, 345
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 4 cut(s) 91, 124, 163, 226
HpyCH4V TGCA 3 cut(s) 183, 213, 336
HpyF3I CTNAG 1 cut(s) 28
Hsp92II CATG 5 cut(s) 111, 183, 213, 265, 390
KspAI GTTAAC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 67, 139
LpnPI CCDG 2 cut(s) 272, 299
MaeI CTAG 2 cut(s) 326, 436
MaeIII GTNAC 1 cut(s) 406
MalI GATC 2 cut(s) 69, 141
MboI GATC 2 cut(s) 67, 139
MboII GAAGA 2 cut(s) 19, 44
MluCI AATT 2 cut(s) 135, 317
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 3 cut(s) 246, 258, 393
MslI CAYNNNNRTG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
NdeII GATC 2 cut(s) 67, 139
NlaIII CATG 5 cut(s) 111, 183, 213, 265, 390
NmuCI GTSAC 1 cut(s) 406
PceI AGGCCT 3 cut(s) 104, 176, 206
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 1 cut(s) 322
PfoI TCCNGGA 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 3 cut(s) 246, 258, 393
Sau3AI GATC 2 cut(s) 67, 139
ScrFI CCNGG 1 cut(s) 287
SetI ASST 3 cut(s) 135, 237, 252
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 2 cut(s) 135, 317
SseBI AGGCCT 3 cut(s) 104, 176, 206
SspMI CTAG 2 cut(s) 326, 436
StuI AGGCCT 3 cut(s) 104, 176, 206
StyD4I CCNGG 1 cut(s) 285
TasI AATT 2 cut(s) 135, 317
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 3 cut(s) 246, 258, 393
Tru9I TTAA 3 cut(s) 246, 258, 393
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 406
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 3 cut(s) 36, 72, 291
TspRI CASTG 1 cut(s) 319
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 2 cut(s) 326, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.