Rroxscaffold_6G00401510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000269
Physical Location & Seq
Reverse (-)
23860809 .. 23868292
7484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401510.1

Sequence Viewer

Length: 540 bp
ATGACGAGAGACATGTGTGGAGATTTGGCTAGGACAGTTTTGAAGGGTTTAGGTGTAAAGAGATTTCAGAATTGCATACCCGAGTGCGAGAAGTTGCAAACACTGGACATTATCTACCACCATGTGGAGTTCAAAGTCAAGAATGTTGTGAAGAAGAAGTTTGCCGACTTCCATGTATTCGAGTCGGCTCAATGCCCTAAACAAGAGGGCGGTTCGATTGTGGGGTGTATGAGATCAAACATATGCGGTGTTATGGATTTGAGTGGTGGCATCGGGTGTGTGCATGTGCCGCATGGTCTTTTAGTGACATTGGCGATATGGATGCAAAATCCTTCTTCGCGGAACATGAAGCTCCTACGAATTCAAAATAGGAAGTTTGAAGCCGTGCCGTCGGCGGAGCTACGAATTCCAATCGGGTCGATTGTATCCAAATGCTACCACCACCACCCGGCGCCATACAACGTGAGAATCATCGGTAGAGGCCACCACGGGGAGGAGCGGAACAAGGAGGCGAGTCATTCTGGAAAGTTTCATCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.14

Weight (kDa)

9.48

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 451
AccB7I CCANNNNNTGG 1 cut(s) 124
AccBSI CCGCTC 1 cut(s) 499
AccII CGCG 1 cut(s) 340
AciI CCGC 6 cut(s) 210, 246, 290, 340, 395, 499
AcsI RAATTY 2 cut(s) 360, 405
AcyI GRCGYC 1 cut(s) 452
AdeI CACNNNGTG 1 cut(s) 124
AfiI CCNNNNNNNGG 4 cut(s) 124, 448, 490, 493
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 4 cut(s) 43, 133, 365, 380
AluBI AGCT 2 cut(s) 352, 400
AluI AGCT 2 cut(s) 352, 400
Alw26I GTCTC 1 cut(s) 3
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 1 cut(s) 481
ApoI RAATTY 2 cut(s) 360, 405
AspLEI GCGC 1 cut(s) 454
AsuC2I CCSGG 1 cut(s) 449
AvaI CYCGRG 1 cut(s) 80
BanI GGYRCC 1 cut(s) 451
BceAI ACGGC 2 cut(s) 368, 373
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciVI GTATCC 1 cut(s) 436
BcnI CCSGG 1 cut(s) 449
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 455
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 80
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 1 cut(s) 449
BmsI GCATC 2 cut(s) 279, 312
BpuMI CCSGG 1 cut(s) 449
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 487
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 448, 490, 493
Bse1I ACTGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 487
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 4 cut(s) 124, 448, 490, 493
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 509
Bsh1236I CGCG 1 cut(s) 340
BshFI GGCC 1 cut(s) 483
BshNI GGYRCC 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 449
BslI CCNNNNNNNGG 4 cut(s) 124, 448, 490, 493
BsmAI GTCTC 1 cut(s) 3
BsnI GGCC 1 cut(s) 483
BsoBI CYCGRG 1 cut(s) 80
Bsp143I GATC 1 cut(s) 233
BspACI CCGC 6 cut(s) 210, 246, 290, 340, 395, 499
BspANI GGCC 1 cut(s) 483
BspFNI CGCG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 451
BsrBI CCGCTC 1 cut(s) 499
BsrI ACTGG 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 487
BssMI GATC 1 cut(s) 233
BssNI GRCGYC 1 cut(s) 452
Bst4CI ACNGT 1 cut(s) 37
BstACI GRCGYC 1 cut(s) 452
BstDSI CCRYGG 1 cut(s) 487
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 455
BstHHI GCGC 1 cut(s) 454
BstKTI GATC 1 cut(s) 236
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNSI RCATGY 2 cut(s) 16, 287
BstSCI CCNGG 1 cut(s) 447
BstUI CGCG 1 cut(s) 340
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 1 cut(s) 483
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 454
CviAII CATG 6 cut(s) 13, 122, 173, 284, 293, 346
CviJI RGCY 6 cut(s) 29, 188, 352, 383, 400, 483
CviKI_1 RGCY 6 cut(s) 29, 188, 352, 383, 400, 483
DinI GGCGCC 1 cut(s) 453
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
DraIII CACNNNGTG 1 cut(s) 124
EciI GGCGGA 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 80
EcoRI GAATTC 2 cut(s) 360, 405
EgeI GGCGCC 1 cut(s) 453
EheI GGCGCC 1 cut(s) 453
FaeI CATG 6 cut(s) 16, 125, 176, 287, 296, 349
FatI CATG 6 cut(s) 12, 121, 172, 283, 292, 345
FauNDI CATATG 1 cut(s) 242
Fnu4HI GCNGC 1 cut(s) 290
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 290
FspBI CTAG 1 cut(s) 30
GlaI GCGC 1 cut(s) 453
GluI GCNGC 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 455
HaeIII GGCC 1 cut(s) 483
HapII CCGG 1 cut(s) 449
HhaI GCGC 1 cut(s) 454
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 6 cut(s) 16, 125, 176, 287, 296, 349
Hin6I GCGC 1 cut(s) 452
HinP1I GCGC 1 cut(s) 452
HinfI GANTC 3 cut(s) 182, 468, 514
HpaII CCGG 1 cut(s) 449
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 139, 522
Hpy99I CGWCG 1 cut(s) 394
HpyAV CCTTC 2 cut(s) 37, 342
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 4 cut(s) 75, 97, 283, 325
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpySE526I ACGT 1 cut(s) 462
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 6 cut(s) 16, 125, 176, 287, 296, 349
HspAI GCGC 1 cut(s) 452
KasI GGCGCC 1 cut(s) 451
Kzo9I GATC 1 cut(s) 233
LmnI GCTCC 3 cut(s) 357, 397, 496
LpnPI CCDG 3 cut(s) 89, 462, 507
LweI GCATC 2 cut(s) 279, 312
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 235
MbiI CCGCTC 1 cut(s) 499
MboI GATC 1 cut(s) 233
MboII GAAGA 3 cut(s) 163, 166, 327
MluCI AATT 3 cut(s) 70, 360, 405
Mly113I GGCGCC 1 cut(s) 452
MlyI GAGTC 2 cut(s) 191, 523
MnlI CCTC 4 cut(s) 199, 473, 487, 502
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 1 cut(s) 449
MvnI CGCG 1 cut(s) 340
MwoI GCNNNNNNNGC 1 cut(s) 289
NarI GGCGCC 1 cut(s) 452
NciI CCSGG 1 cut(s) 449
NdeI CATATG 1 cut(s) 242
NdeII GATC 1 cut(s) 233
NlaIII CATG 6 cut(s) 16, 125, 176, 287, 296, 349
NlaIV GGNNCC 1 cut(s) 453
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 2 cut(s) 16, 287
PciI ACATGT 1 cut(s) 12
PfeI GAWTC 1 cut(s) 468
PflMI CCANNNNNTGG 1 cut(s) 124
PkrI GCNGC 1 cut(s) 291
PleI GAGTC 2 cut(s) 190, 522
PluTI GGCGCC 1 cut(s) 455
PpsI GAGTC 2 cut(s) 190, 522
PscI ACATGT 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 453
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 1 cut(s) 233
SchI GAGTC 2 cut(s) 191, 523
ScrFI CCNGG 1 cut(s) 449
SetI ASST 4 cut(s) 55, 354, 402, 465
SfaNI GCATC 2 cut(s) 279, 312
SfoI GGCGCC 1 cut(s) 453
Sse9I AATT 3 cut(s) 70, 360, 405
SsiI CCGC 6 cut(s) 210, 246, 290, 340, 395, 499
SspDI GGCGCC 1 cut(s) 451
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 447
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 465
TaqI TCGA 3 cut(s) 180, 215, 419
TasI AATT 3 cut(s) 70, 360, 405
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 1 cut(s) 468
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 2 cut(s) 362, 521
TspRI CASTG 1 cut(s) 108
Van91I CCANNNNNTGG 1 cut(s) 124
XapI RAATTY 2 cut(s) 360, 405
XceI RCATGY 2 cut(s) 16, 287
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.