FvH4_2g04882

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000269
Physical Location & Seq
Reverse (-)
3807315 .. 3808120
806 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04882.t1

Sequence Viewer

Length: 486 bp
ATGTCTGCTTCTCTTACAAACATTTTATTGCGAGAATTGTTCATACCAGTAAATCACAACCAAAGCCACTGGTTCCTATTGGTGTTGCGTCTTGATCTTGGAAGGGCCGAAATATGGGATAGCCTTCCACATGGATTCCACACTCGTTCGGAAATATGCAAAACTATTCTTCAAGTATTGGACTTTGCTGCCGGGGATATGGAATTCAAGTTCAAGAAGGGGCTCTTTGCACAATTTGAACTTTACGACCCGCCTCACCGTCCAATACAATATGACTCACACACTATTCGCATGAAGTTGATGATTGAGTTGGTGAGGAACAAATATAACCAATTATGGCCCACAATTGAGAGTAAAGTCAAGAAACAACTTTCTTCCCCACCGCATCACAACCGTCAACAAACACAGAAGAAGGGCAGTGTCAAGAACCCAGCTCGCCGATTGTCCACGAAGAGGCGTCCATCATATGTTCGTCGTAATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

162

Amino Acids

19.0

Weight (kDa)

10.35

Isoelectric Point (pI)

69.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 251, 383
AcsI RAATTY 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 457
AfiI CCNNNNNNNGG 2 cut(s) 114, 453
AgsI TTSAA 4 cut(s) 173, 208, 214, 239
AloI GAACNNNNNNTCC 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
AoxI GGCC 2 cut(s) 105, 338
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 203
AspS9I GGNCC 2 cut(s) 105, 339
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 248, 325
BanII GRGCYC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 469
BcnI CCSGG 1 cut(s) 193
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 105, 339
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 193
BmsI GCATC 1 cut(s) 394
BpuMI CCSGG 1 cut(s) 193
BsaHI GRCGYC 1 cut(s) 457
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 453
Bse1I ACTGG 2 cut(s) 47, 74
BseDI CCNNGG 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 114, 453
BseNI ACTGG 2 cut(s) 47, 74
BseXI GCAGC 1 cut(s) 175
BseYI CCCAGC 1 cut(s) 430
BshFI GGCC 2 cut(s) 107, 340
BsiSI CCGG 1 cut(s) 192
BslI CCNNNNNNNGG 2 cut(s) 114, 453
BsnI GGCC 2 cut(s) 107, 340
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 2 cut(s) 251, 383
BspANI GGCC 2 cut(s) 107, 340
BspLI GGNNCC 1 cut(s) 74
BsrI ACTGG 2 cut(s) 47, 74
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 1 cut(s) 94
BssNI GRCGYC 1 cut(s) 457
Bst4CI ACNGT 2 cut(s) 260, 395
Bst6I CTCTTC 1 cut(s) 446
BstACI GRCGYC 1 cut(s) 457
BstC8I GCNNGC 1 cut(s) 436
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstSCI CCNGG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 175
BsuRI GGCC 2 cut(s) 107, 340
BtsI GCAGTG 1 cut(s) 424
BtsIMutI CAGTG 2 cut(s) 67, 424
Cac8I GCNNGC 1 cut(s) 436
Cfr13I GGNCC 2 cut(s) 105, 339
CseI GACGC 2 cut(s) 77, 446
CviAII CATG 2 cut(s) 131, 292
CviJI RGCY 6 cut(s) 66, 107, 123, 223, 340, 434
CviKI_1 RGCY 6 cut(s) 66, 107, 123, 223, 340, 434
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
Eco24I GRGCYC 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 225
FaeI CATG 2 cut(s) 134, 295
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FatI CATG 2 cut(s) 130, 291
FauI CCCGC 1 cut(s) 258
FauNDI CATATG 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 189
GluI GCNGC 1 cut(s) 189
GsaI CCCAGC 1 cut(s) 434
HaeIII GGCC 2 cut(s) 107, 340
HapII CCGG 1 cut(s) 192
HgaI GACGC 2 cut(s) 77, 446
Hin1I GRCGYC 1 cut(s) 457
Hin1II CATG 2 cut(s) 134, 295
HincII GTYRAC 1 cut(s) 398
HindII GTYRAC 1 cut(s) 398
HinfI GANTC 2 cut(s) 135, 275
HpaII CCGG 1 cut(s) 192
HphI GGTGA 2 cut(s) 248, 325
Hpy166II GTNNAC 2 cut(s) 398, 447
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 4 cut(s) 92, 214, 361, 424
Hpy8I GTNNAC 2 cut(s) 398, 447
Hpy99I CGWCG 1 cut(s) 477
HpyAV CCTTC 4 cut(s) 96, 134, 211, 406
HpyCH4III ACNGT 2 cut(s) 260, 395
HpyCH4V TGCA 2 cut(s) 159, 230
Hsp92I GRCGYC 1 cut(s) 457
Hsp92II CATG 2 cut(s) 134, 295
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 4 cut(s) 55, 60, 205, 444
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 394
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 4 cut(s) 161, 366, 421, 463
MfeI CAATTG 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 5 cut(s) 35, 203, 233, 332, 345
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 3 cut(s) 264, 309, 447
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 193
MunI CAATTG 1 cut(s) 345
NciI CCSGG 1 cut(s) 193
NdeI CATATG 1 cut(s) 466
NdeII GATC 1 cut(s) 94
NlaIII CATG 2 cut(s) 134, 295
NlaIV GGNNCC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 135
PkrI GCNGC 1 cut(s) 190
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 74
PspPI GGNCC 2 cut(s) 105, 339
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 1 cut(s) 94
Sau96I GGNCC 2 cut(s) 105, 339
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 1 cut(s) 225
SetI ASST 1 cut(s) 436
SfaNI GCATC 1 cut(s) 394
Sse9I AATT 5 cut(s) 35, 203, 233, 332, 345
SsiI CCGC 2 cut(s) 251, 383
StyD4I CCNGG 1 cut(s) 191
TaaI ACNGT 2 cut(s) 260, 395
TasI AATT 5 cut(s) 35, 203, 233, 332, 345
TfiI GAWTC 1 cut(s) 135
TscAI CASTG 2 cut(s) 74, 424
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 31, 308
TspRI CASTG 2 cut(s) 74, 424
XapI RAATTY 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.