FvH4_4g10124

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000269
Physical Location & Seq
Reverse (-)
13017658 .. 13019878
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10124.t1

Sequence Viewer

Length: 1098 bp
ATGCTTGACTCGCGGGTTGGTTGGAAGAAGGTTGGGGGGCGTGTGCGCACAGACGATGTTGCACCCGGGGTTAGTAGGCAGGAGTTCGATTTGGCGATGGGTAGAGTCGGTCGATTGGAAGACCAAGTGCGCAACATAGGGGCAGAAATGGGGCAAGGTTTTGCTGCCATCATTAGTAGGCTCGACTCCATGGGTGCAGCAGGTCCATCAAAGGCAAAAGGGAGAGGGAAGAAGAAAGAGGTACCGGTAGATTTGGACCGGTCACCGCCGAAAAAGAAAGTCACGGTCATCCTCTCGGACTCGACGTCGATTGTGAGCCCCGAGAAAAAAGATATCCCCAAACCTAATCCCTTTGAGGGGAAGAATAGAAGGATTAATATTGGCTCATTTCGTGTCTATGGTGACGGAGATGTGATTGACAAAGGCGTAGTTACAAACGTATGCGACCCATGCTCGGCCCAAGAACTTGTCGAGAAGATTGTGCTCAGCACAACCGGCGACATATGGGCTACTAGAAAACATATTAAGACACTACAACCAAACCAATGGGTTGTGGATGATTTCATCAACATGTTTTCGAACTATCTTAACCAAGAACAAAATGAGAGAGATAAAACTCTGAGACGTTCTGGAAAAATGTCTGCTTCTCTTACAAACATTTTATTGCGAGAATTGTTCATACCAGTAAATTACAACCAAAGCCATTGGTTCCTATTGCTGTTGCGTCTTGATCTTGGAAGGGCCGAAATATGGGATAGCCTCCCACATAGATTCCACACTCGTTCGGAAATATGCAAAACTATTCTTCAAGTATTGGACTTTGCTGCTGGGGATATGGAATTCAAGTTCAAGAAGGGGCTCTTTGCACAATTTGAACTTTACGACCCGCCTCACCGTCCAATACAATATGACTCACACACTATTCGCATGAAGTTGATGATTGAGTTGGTGAGGAACAAATATAACCAATTATGGCCCACAATTGAGAGTAAAGTCAAGAAACAACTTTCTTCCCCACTGAAGAAGGGCAGTGTCAAGAACCCAGCTCGTCGATTGTCCACGAAGAGGCGTCCATCAGATGTTCGTCGCAGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

366

Amino Acids

41.5

Weight (kDa)

9.94

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 308
Acc16I TGCGCA 2 cut(s) 47, 131
Acc36I ACCTGC 1 cut(s) 191
Acc65I GGTACC 1 cut(s) 241
AccB1I GGYRCC 1 cut(s) 241
AccII CGCG 1 cut(s) 13
AciI CCGC 3 cut(s) 13, 266, 887
AcsI RAATTY 1 cut(s) 839
AcuI CTGAAG 1 cut(s) 1040
AcyI GRCGYC 2 cut(s) 305, 1069
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 5 cut(s) 356, 357, 454, 750, 1065
AflIII ACRYGT 1 cut(s) 570
AgeI ACCGGT 2 cut(s) 244, 258
AgsI TTSAA 4 cut(s) 809, 844, 850, 875
AhdI GACNNNNNGTC 1 cut(s) 304
AloI GAACNNNNNNTCC 2 cut(s) 830, 862
AluBI AGCT 1 cut(s) 1046
AluI AGCT 1 cut(s) 1046
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 1 cut(s) 616
Ama87I CYCGRG 2 cut(s) 65, 320
AoxI GGCC 3 cut(s) 456, 741, 974
ApeKI GCWGC 3 cut(s) 164, 197, 824
ApoI RAATTY 1 cut(s) 839
AseI ATTAAT 1 cut(s) 375
AsiGI ACCGGT 2 cut(s) 244, 258
Asp718I GGTACC 1 cut(s) 241
AspLEI GCGC 2 cut(s) 48, 132
AspS9I GGNCC 5 cut(s) 203, 256, 457, 741, 975
AsuC2I CCSGG 2 cut(s) 66, 67
AsuHPI GGTGA 4 cut(s) 255, 413, 884, 961
AsuII TTCGAA 1 cut(s) 578
AvaI CYCGRG 2 cut(s) 65, 320
AvaII GGWCC 2 cut(s) 203, 256
BanI GGYRCC 1 cut(s) 241
BanII GRGCYC 2 cut(s) 320, 861
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 3 cut(s) 151, 209, 811
BccI CCATC 4 cut(s) 91, 176, 214, 1081
BcnI CCSGG 2 cut(s) 66, 67
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 191
BisI GCNGC 3 cut(s) 165, 198, 825
BlpI GCTNAGC 1 cut(s) 485
BlsI GCNGC 3 cut(s) 166, 199, 826
Bme1390I CCNGG 2 cut(s) 66, 67
Bme18I GGWCC 2 cut(s) 203, 256
BmeRI GACNNNNNGTC 1 cut(s) 304
BmeT110I CYCGRG 2 cut(s) 65, 320
BmgT120I GGNCC 5 cut(s) 203, 256, 457, 741, 975
BmiI GGNNCC 2 cut(s) 243, 710
BmrFI CCNGG 2 cut(s) 66, 67
BpiI GAAGAC 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 485
Bpu14I TTCGAA 1 cut(s) 578
BpuMI CCSGG 2 cut(s) 66, 67
BsaHI GRCGYC 2 cut(s) 305, 1069
BsaJI CCNNGG 3 cut(s) 65, 66, 189
BsaWI WCCGGW 2 cut(s) 244, 258
Bsc4I CCNNNNNNNGG 5 cut(s) 356, 357, 454, 750, 1065
Bse118I RCCGGY 3 cut(s) 244, 258, 494
Bse1I ACTGG 1 cut(s) 683
BseDI CCNNGG 3 cut(s) 65, 66, 189
BseGI GGATG 2 cut(s) 288, 562
BseLI CCNNNNNNNGG 5 cut(s) 356, 357, 454, 750, 1065
BseMII CTCAG 2 cut(s) 499, 611
BseNI ACTGG 1 cut(s) 683
BseXI GCAGC 3 cut(s) 151, 209, 811
BseYI CCCAGC 2 cut(s) 827, 1042
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 3 cut(s) 458, 743, 976
BshNI GGYRCC 1 cut(s) 241
BshTI ACCGGT 2 cut(s) 244, 258
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 2 cut(s) 65, 320
BsiSI CCGG 4 cut(s) 66, 245, 259, 495
BslI CCNNNNNNNGG 5 cut(s) 356, 357, 454, 750, 1065
BsmAI GTCTC 1 cut(s) 616
BsmBI CGTCTC 1 cut(s) 616
BsnI GGCC 3 cut(s) 458, 743, 976
BsoBI CYCGRG 2 cut(s) 65, 320
Bsp119I TTCGAA 1 cut(s) 578
Bsp1286I GDGCHC 3 cut(s) 320, 486, 861
Bsp143I GATC 1 cut(s) 730
Bsp1720I GCTNAGC 1 cut(s) 485
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 3 cut(s) 13, 266, 887
BspANI GGCC 3 cut(s) 458, 743, 976
BspCNI CTCAG 2 cut(s) 498, 612
BspFNI CGCG 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 243, 710
BspMI ACCTGC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 578
BspT107I GGYRCC 1 cut(s) 241
BsrFI RCCGGY 3 cut(s) 244, 258, 494
BsrI ACTGG 1 cut(s) 683
BssAI RCCGGY 3 cut(s) 244, 258, 494
BssECI CCNNGG 3 cut(s) 65, 66, 189
BssMI GATC 1 cut(s) 730
BssNI GRCGYC 2 cut(s) 305, 1069
BssT1I CCWWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 286, 896
Bst6I CTCTTC 1 cut(s) 1058
BstACI GRCGYC 2 cut(s) 305, 1069
BstBI TTCGAA 1 cut(s) 578
BstDEI CTNAG 2 cut(s) 485, 620
BstDSI CCRYGG 1 cut(s) 189
BstEII GGTNACC 1 cut(s) 261
BstF5I GGATG 2 cut(s) 288, 562
BstFNI CGCG 1 cut(s) 13
BstHHI GCGC 2 cut(s) 48, 132
BstKTI GATC 1 cut(s) 733
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 1 cut(s) 730
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 10, 450, 495
BstNSI RCATGY 1 cut(s) 574
BstPI GGTNACC 1 cut(s) 261
BstSCI CCNGG 2 cut(s) 64, 65
BstUI CGCG 1 cut(s) 13
BstV1I GCAGC 3 cut(s) 151, 209, 811
BstV2I GAAGAC 1 cut(s) 126
BstXI CCANNNNNNTGG 1 cut(s) 546
BsuRI GGCC 3 cut(s) 458, 743, 976
BtgI CCRYGG 1 cut(s) 189
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 2 cut(s) 288, 562
BtsI GCAGTG 2 cut(s) 1036, 1096
BtsIMutI CAGTG 3 cut(s) 1016, 1036, 1096
BveI ACCTGC 1 cut(s) 191
CfoI GCGC 2 cut(s) 48, 132
Cfr10I RCCGGY 3 cut(s) 244, 258, 494
Cfr13I GGNCC 5 cut(s) 203, 256, 457, 741, 975
Cfr9I CCCGGG 1 cut(s) 65
CseI GACGC 2 cut(s) 713, 1058
Csp6I GTAC 1 cut(s) 242
CspAI ACCGGT 2 cut(s) 244, 258
CviAII CATG 4 cut(s) 190, 450, 571, 928
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 2 cut(s) 485, 620
DpnI GATC 1 cut(s) 732
DpnII GATC 1 cut(s) 730
DriI GACNNNNNGTC 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 1058
Eam1105I GACNNNNNGTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 1058
Eco130I CCWWGG 1 cut(s) 189
Eco24I GRGCYC 2 cut(s) 320, 861
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 203, 256
Eco57I CTGAAG 1 cut(s) 1040
Eco88I CYCGRG 2 cut(s) 65, 320
Eco91I GGTNACC 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 839
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 189
EcoT38I GRGCYC 2 cut(s) 320, 861
ErhI CCWWGG 1 cut(s) 189
Esp3I CGTCTC 1 cut(s) 616
FaeI CATG 4 cut(s) 193, 453, 574, 931
FalI AAGNNNNNCTT 2 cut(s) 845, 877
FatI CATG 4 cut(s) 189, 449, 570, 927
FauI CCCGC 2 cut(s) 6, 894
FauNDI CATATG 1 cut(s) 503
Fnu4HI GCNGC 3 cut(s) 165, 198, 825
FokI GGATG 2 cut(s) 275, 569
FriOI GRGCYC 2 cut(s) 320, 861
Fsp4HI GCNGC 3 cut(s) 165, 198, 825
FspAI RTGCGCAY 1 cut(s) 47
FspBI CTAG 1 cut(s) 513
FspI TGCGCA 2 cut(s) 47, 131
GlaI GCGC 2 cut(s) 47, 131
GluI GCNGC 3 cut(s) 165, 198, 825
GsaI CCCAGC 2 cut(s) 831, 1046
HaeIII GGCC 3 cut(s) 458, 743, 976
HapII CCGG 4 cut(s) 66, 245, 259, 495
HgaI GACGC 2 cut(s) 713, 1058
HhaI GCGC 2 cut(s) 48, 132
Hin1I GRCGYC 2 cut(s) 305, 1069
Hin1II CATG 4 cut(s) 193, 453, 574, 931
Hin6I GCGC 2 cut(s) 46, 130
HinP1I GCGC 2 cut(s) 46, 130
HinfI GANTC 6 cut(s) 8, 105, 185, 299, 771, 911
HpaII CCGG 4 cut(s) 66, 245, 259, 495
HphI GGTGA 4 cut(s) 255, 413, 884, 961
Hpy166II GTNNAC 1 cut(s) 1059
Hpy188I TCNGA 4 cut(s) 298, 621, 787, 1078
Hpy188III TCNNGA 6 cut(s) 472, 630, 728, 850, 997, 1036
Hpy8I GTNNAC 1 cut(s) 1059
Hpy99I CGWCG 4 cut(s) 307, 310, 1053, 1089
HpyAV CCTTC 5 cut(s) 22, 363, 732, 847, 1018
HpyCH4III ACNGT 2 cut(s) 286, 896
HpyCH4IV ACGT 3 cut(s) 305, 438, 625
HpyCH4V TGCA 4 cut(s) 62, 197, 795, 866
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 450, 495
HpyF3I CTNAG 2 cut(s) 485, 620
HpySE526I ACGT 3 cut(s) 305, 438, 625
Hsp92I GRCGYC 2 cut(s) 305, 1069
Hsp92II CATG 4 cut(s) 193, 453, 574, 931
HspAI GCGC 2 cut(s) 46, 130
KpnI GGTACC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 730
Lsp1109I GCAGC 3 cut(s) 151, 209, 811
MaeI CTAG 1 cut(s) 513
MaeII ACGT 3 cut(s) 305, 438, 625
MaeIII GTNAC 4 cut(s) 261, 280, 401, 430
MalI GATC 1 cut(s) 732
MboI GATC 1 cut(s) 730
MfeI CAATTG 1 cut(s) 981
MhlI GDGCHC 3 cut(s) 320, 486, 861
MluCI AATT 6 cut(s) 671, 688, 839, 869, 968, 981
MlyI GAGTC 5 cut(s) 2, 114, 179, 293, 905
MnlI CCTC 8 cut(s) 218, 232, 302, 349, 770, 900, 945, 1059
MseI TTAA 3 cut(s) 375, 525, 588
MslI CAYNNNNRTG 1 cut(s) 569
MspI CCGG 4 cut(s) 66, 245, 259, 495
MspR9I CCNGG 2 cut(s) 66, 67
MunI CAATTG 1 cut(s) 981
MvnI CGCG 1 cut(s) 13
MwoI GCNNNNNNNGC 3 cut(s) 10, 450, 495
NciI CCSGG 2 cut(s) 66, 67
NcoI CCATGG 1 cut(s) 189
NdeI CATATG 1 cut(s) 503
NdeII GATC 1 cut(s) 730
NlaIII CATG 4 cut(s) 193, 453, 574, 931
NlaIV GGNNCC 2 cut(s) 243, 710
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 3 cut(s) 261, 280, 401
NsbI TGCGCA 2 cut(s) 47, 131
NspI RCATGY 1 cut(s) 574
NspV TTCGAA 1 cut(s) 578
PciI ACATGT 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PfeI GAWTC 1 cut(s) 771
PinAI ACCGGT 2 cut(s) 244, 258
PkrI GCNGC 3 cut(s) 166, 199, 826
PleI GAGTC 5 cut(s) 2, 113, 179, 293, 905
PpsI GAGTC 5 cut(s) 2, 113, 179, 293, 905
PscI ACATGT 1 cut(s) 570
PshBI ATTAAT 1 cut(s) 375
PspEI GGTNACC 1 cut(s) 261
PspFI CCCAGC 2 cut(s) 827, 1042
PspN4I GGNNCC 2 cut(s) 243, 710
PspPI GGNCC 5 cut(s) 203, 256, 457, 741, 975
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 569
SaqAI TTAA 3 cut(s) 375, 525, 588
SatI GCNGC 3 cut(s) 165, 198, 825
Sau3AI GATC 1 cut(s) 730
Sau96I GGNCC 5 cut(s) 203, 256, 457, 741, 975
SchI GAGTC 5 cut(s) 2, 114, 179, 293, 905
ScrFI CCNGG 2 cut(s) 66, 67
SduI GDGCHC 3 cut(s) 320, 486, 861
SetI ASST 9 cut(s) 33, 160, 205, 243, 308, 346, 441, 628, 1048
SfuI TTCGAA 1 cut(s) 578
SinI GGWCC 2 cut(s) 203, 256
SmaI CCCGGG 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 569
Sse9I AATT 6 cut(s) 671, 688, 839, 869, 968, 981
SsiI CCGC 3 cut(s) 13, 266, 887
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 64, 65
StyI CCWWGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 286, 896
TaiI ACGT 3 cut(s) 308, 441, 628
TaqI TCGA 8 cut(s) 87, 112, 183, 302, 308, 471, 578, 1051
TaqII GACCGA 1 cut(s) 98
TasI AATT 6 cut(s) 671, 688, 839, 869, 968, 981
TfiI GAWTC 1 cut(s) 771
Tru1I TTAA 3 cut(s) 375, 525, 588
Tru9I TTAA 3 cut(s) 375, 525, 588
TscAI CASTG 3 cut(s) 1023, 1036, 1096
TseFI GTSAC 3 cut(s) 261, 280, 401
TseI GCWGC 3 cut(s) 164, 197, 824
Tsp45I GTSAC 3 cut(s) 261, 280, 401
TspDTI ATGAA 3 cut(s) 553, 667, 944
TspGWI ACGGA 1 cut(s) 420
TspMI CCCGGG 1 cut(s) 65
TspRI CASTG 3 cut(s) 1023, 1036, 1096
VpaK11BI GGWCC 2 cut(s) 203, 256
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 1 cut(s) 839
XceI RCATGY 1 cut(s) 574
XmaI CCCGGG 1 cut(s) 65
XspI CTAG 1 cut(s) 513
ZraI GACGTC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.