Rh7CG338800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000269
Physical Location & Seq
Reverse (-)
37918440 .. 37919060
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG338800.1

Sequence Viewer

Length: 621 bp
ATGAGCACCATCCTTAGCCCATCTGCCTCACTAATGATACCAAAGAAGTGGCTGCTGGCCCTGAAGGACACTTGTCTGATTAGCTCTTTAAACTGGGCTGATTACTCATTCAAATGTTTGATGGAGGCCATCATCAGTTTCAAAAAAGACTCTCAGTCCTATTGTAGCAGTTGTGTCCTTTTTCTGCAACTGTTCTATTTTGATTGTGTTTCACATGGGAAGACTATTGTGGATAAGTCCTTGTACCCAGTTGAAGCTTGGGGGGACCATGAAATGGGCAAACTGCTCAAATGGGCGAACAAGCAAGGTGGTTTGCTAGATGAAAATGTTCTCATGGCAAAGGTTGGTGATCGTGTTGGTAGTGGAGATCAGGGCAAAGCATATGGGGTGATTAAGAAAGATATGTCTGACTTGGCTGCTAAAGTGAATGGGTTGGAAAATAATATGTGCAATCTGAGAGATGATATGATGGGAAAGATGGACAAAGTCTTGAGTATGCTGAATACTCTGACTGCACAAAATGTGAATGTCAATCAGAACCTTCAAACTGATGGCTTAGCAGAAAAAGTAAGCCCCAAGAAAGTTTCAAAAAAGAAAGTTGGAGAGCAACATGAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

206

Amino Acids

22.84

Weight (kDa)

8.43

Isoelectric Point (pI)

25.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 5 cut(s) 112, 142, 254, 545, 588
AhdI GACNNNNNGTC 1 cut(s) 154
AluBI AGCT 2 cut(s) 84, 257
AluI AGCT 2 cut(s) 84, 257
Alw21I GWGCWC 1 cut(s) 8
AoxI GGCC 2 cut(s) 57, 126
ApeKI GCWGC 2 cut(s) 52, 416
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 2 cut(s) 58, 265
AsuHPI GGTGA 2 cut(s) 359, 400
AvaII GGWCC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 39, 403
BccI CCATC 7 cut(s) 17, 28, 115, 137, 463, 472, 545
BfaI CTAG 1 cut(s) 317
BisI GCNGC 2 cut(s) 53, 417
BlpI GCTNAGC 1 cut(s) 556
BlsI GCNGC 2 cut(s) 54, 418
Bme18I GGWCC 1 cut(s) 265
BmeRI GACNNNNNGTC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 58, 265
BmiI GGNNCC 1 cut(s) 266
BmrI ACTGGG 2 cut(s) 103, 242
BmuI ACTGGG 2 cut(s) 103, 242
BoxI GACNNNNGTC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 14
Bpu1102I GCTNAGC 1 cut(s) 556
BpuEI CTTGAG 1 cut(s) 511
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse1I ACTGG 2 cut(s) 98, 248
BseGI GGATG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 167, 446
BseNI ACTGG 2 cut(s) 98, 248
BseXI GCAGC 2 cut(s) 39, 403
BsgI GTGCAG 1 cut(s) 498
BshFI GGCC 2 cut(s) 59, 128
BsiHKAI GWGCWC 1 cut(s) 8
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 2 cut(s) 59, 128
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 349, 367
Bsp1720I GCTNAGC 1 cut(s) 556
BspANI GGCC 2 cut(s) 59, 128
BspCNI CTCAG 2 cut(s) 166, 447
BspLI GGNNCC 1 cut(s) 266
BsrI ACTGG 2 cut(s) 98, 248
BssMI GATC 2 cut(s) 349, 367
Bst4CI ACNGT 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 4 cut(s) 14, 153, 455, 556
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 2 cut(s) 352, 370
BstMBI GATC 2 cut(s) 349, 367
BstPAI GACNNNNGTC 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 39, 403
BstV2I GAAGAC 1 cut(s) 227
BstXI CCANNNNNNTGG 1 cut(s) 48
BsuRI GGCC 2 cut(s) 59, 128
BtsCI GGATG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 58, 265
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 4 cut(s) 215, 269, 334, 611
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 4 cut(s) 14, 153, 455, 556
DpnI GATC 2 cut(s) 351, 369
DpnII GATC 2 cut(s) 349, 367
DraI TTTAAA 1 cut(s) 90
DriI GACNNNNNGTC 1 cut(s) 154
Eam1105I GACNNNNNGTC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 83
FaeI CATG 4 cut(s) 218, 272, 337, 614
FaqI GGGAC 1 cut(s) 278
FatI CATG 4 cut(s) 214, 268, 333, 610
FauNDI CATATG 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 53, 417
Fsp4HI GCNGC 2 cut(s) 53, 417
FspBI CTAG 1 cut(s) 317
GluI GCNGC 2 cut(s) 53, 417
HaeIII GGCC 2 cut(s) 59, 128
Hin1II CATG 4 cut(s) 218, 272, 337, 614
HindIII AAGCTT 1 cut(s) 255
HinfI GANTC 1 cut(s) 149
HphI GGTGA 2 cut(s) 359, 400
Hpy188I TCNGA 5 cut(s) 78, 409, 456, 510, 537
Hpy188III TCNNGA 1 cut(s) 490
HpyAV CCTTC 2 cut(s) 58, 551
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 187, 450, 515
HpyF3I CTNAG 4 cut(s) 14, 153, 455, 556
Hsp92II CATG 4 cut(s) 218, 272, 337, 614
Kzo9I GATC 2 cut(s) 349, 367
LpnPI CCDG 5 cut(s) 41, 74, 79, 261, 356
Lsp1109I GCAGC 2 cut(s) 39, 403
MaeI CTAG 1 cut(s) 317
MalI GATC 2 cut(s) 351, 369
MboI GATC 2 cut(s) 349, 367
MboII GAAGA 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 414, 580
MnlI CCTC 3 cut(s) 37, 118, 607
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 2 cut(s) 89, 393
MslI CAYNNNNRTG 1 cut(s) 112
NdeI CATATG 1 cut(s) 382
NdeII GATC 2 cut(s) 349, 367
NlaIII CATG 4 cut(s) 218, 272, 337, 614
NlaIV GGNNCC 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 327
PflFI GACNNNGTC 1 cut(s) 485
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 2 cut(s) 54, 418
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PshAI GACNNNNGTC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 2 cut(s) 58, 265
PsyI GACNNNGTC 1 cut(s) 485
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 112
SaqAI TTAA 2 cut(s) 89, 393
SatI GCNGC 2 cut(s) 53, 417
Sau3AI GATC 2 cut(s) 349, 367
Sau96I GGNCC 2 cut(s) 58, 265
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 1 cut(s) 8
SetI ASST 6 cut(s) 86, 259, 310, 345, 543, 618
SinI GGWCC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
SspMI CTAG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 192
Tru1I TTAA 2 cut(s) 89, 393
Tru9I TTAA 2 cut(s) 89, 393
TseI GCWGC 2 cut(s) 52, 416
TspDTI ATGAA 2 cut(s) 285, 336
Tth111I GACNNNGTC 1 cut(s) 485
Van91I CCANNNNNTGG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.