RLG00000019919

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000269
Physical Location & Seq
Reverse (-)
58524366 .. 58525600
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019919

Sequence Viewer

Length: 870 bp
ATGAAGAAAGTTGATGCCAACCCCTTGACCAAGAGTAACATAGAGAATATTGGTAACTTCAAAGTCAAGGGAGATCAGGTGGAGGCTGACAAAGAAGTGCTCAGGTTTGTTTATGATGTGTCAACTGAAGAGAAGGAGACCATTGTGGATAGTGAAAATTTCTTCACTAGTCGAAAAGCAGTTTGGTCACTTAAACCTAACGGATGGGTTAAAGATGATATTATCAATTTGTTTAGTGATTATCTTTTTCTAGGACGCTCCCCAGGCAATAGATGTTGTTACTTCACAACATACTTCTGTCAGAAGATGAAAAGTTACAATGACAGAAACATGTGTAGAGATTTGGCTAAGACAGTTTCAAAGGGTTTGGGTGTAAAGCTATTTGAGAATGGCATACCTGACTGTGAAAAGATTTTCGTACCAATGCATGACGTCAATCATTGGTACCTCCTTGTTGTGCATCTTGATAATCTGACAGGAAAAGTGTGGGATAGCTTAGAATGTAACAGGAGACGAATGAATCTGTGCAAAGCCGCTTTGCAAACACTGGACATTATCTACCACCATGTGGAGTTCAAAGTCAAGAATGTTGTGAAGAAGAAATTTGTCGACTTCCATTTTAACTCAGAAGAGGTGCGCATGGACTTAACCATTGAATTGGCAAGGAACAAATTCAATGAGTGCTGGAAATGGATCGAGGAAGCCATCAAAATTTGGCCACCACCAATATGTTCTACACCTAAGACGGCACAAAGGGAAACTAAAGCAGCACCAAAGAAAGGGACCGTGAAGAACCCAATAGTCCAACCACCTTGCACTAGAGCTCAATCCAAGAGGAGTGTGGCATCAAATGTCCGTCGCAGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

290

Amino Acids

33.61

Weight (kDa)

9.29

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 69 - 179 5.3e-10 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 855
AatII GACGTC 1 cut(s) 435
Acc16I TGCGCA 1 cut(s) 638
Acc36I ACCTGC 1 cut(s) 855
Acc65I GGTACC 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 444
AccB7I CCANNNNNTGG 1 cut(s) 568
AccI GTMKAC 1 cut(s) 609
AciI CCGC 1 cut(s) 534
AclWI GGATC 1 cut(s) 701
AcoI YGGCCR 1 cut(s) 716
AcsI RAATTY 4 cut(s) 157, 602, 671, 711
AcuI CTGAAG 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 432
AdeI CACNNNGTG 1 cut(s) 568
AfaI GTAC 2 cut(s) 420, 446
AfiI CCNNNNNNNGG 2 cut(s) 568, 779
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 5 cut(s) 61, 360, 577, 656, 676
AhlI ACTAGT 1 cut(s) 167
AjnI CCWGG 1 cut(s) 262
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 3 cut(s) 379, 495, 824
AluI AGCT 3 cut(s) 379, 495, 824
Alw21I GWGCWC 2 cut(s) 102, 826
Alw26I GTCTC 2 cut(s) 131, 505
AlwI GGATC 1 cut(s) 701
AoxI GGCC 1 cut(s) 716
ApeKI GCWGC 2 cut(s) 767, 861
ApoI RAATTY 4 cut(s) 157, 602, 671, 711
Asp700I GAANNNNTTC 1 cut(s) 671
Asp718I GGTACC 1 cut(s) 444
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 1 cut(s) 783
AvaII GGWCC 1 cut(s) 783
BalI TGGCCA 1 cut(s) 718
BanI GGYRCC 1 cut(s) 444
BanII GRGCYC 1 cut(s) 826
Bbv12I GWGCWC 2 cut(s) 102, 826
BbvI GCAGC 1 cut(s) 779
BccI CCATC 2 cut(s) 198, 713
BceAI ACGGC 1 cut(s) 762
BciT130I CCWGG 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 131, 505
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 3 cut(s) 168, 251, 819
BfuAI ACCTGC 1 cut(s) 855
BisI GCNGC 3 cut(s) 534, 768, 862
BlsI GCNGC 3 cut(s) 535, 769, 863
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 783
BmgT120I GGNCC 1 cut(s) 783
BmiI GGNNCC 2 cut(s) 446, 784
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 3 cut(s) 4, 469, 854
Bpu10I CCTNAGC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 2 cut(s) 568, 779
Bse1I ACTGG 1 cut(s) 552
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 2 cut(s) 568, 779
BseMII CTCAG 2 cut(s) 115, 639
BseNI ACTGG 1 cut(s) 552
BseRI GAGGAG 1 cut(s) 850
BseXI GCAGC 1 cut(s) 779
BshFI GGCC 1 cut(s) 718
BshNI GGYRCC 1 cut(s) 444
BsiHKAI GWGCWC 2 cut(s) 102, 826
BslFI GGGAC 1 cut(s) 796
BslI CCNNNNNNNGG 2 cut(s) 568, 779
BsmAI GTCTC 2 cut(s) 131, 505
BsmBI CGTCTC 1 cut(s) 505
BsmFI GGGAC 1 cut(s) 796
BsnI GGCC 1 cut(s) 718
Bso31I GGTCTC 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 102, 826
Bsp143I GATC 2 cut(s) 73, 693
BspACI CCGC 1 cut(s) 534
BspANI GGCC 1 cut(s) 718
BspCNI CTCAG 2 cut(s) 114, 638
BspLI GGNNCC 2 cut(s) 446, 784
BspMI ACCTGC 1 cut(s) 855
BspPI GGATC 1 cut(s) 701
BspT107I GGYRCC 1 cut(s) 444
BspTNI GGTCTC 1 cut(s) 131
BsrI ACTGG 1 cut(s) 552
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 2 cut(s) 73, 693
BssNI GRCGYC 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 3 cut(s) 355, 404, 787
Bst6I CTCTTC 2 cut(s) 123, 624
BstACI GRCGYC 1 cut(s) 432
BstDEI CTNAG 5 cut(s) 101, 348, 496, 625, 741
BstF5I GGATG 1 cut(s) 209
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 2 cut(s) 76, 696
BstMAI GTCTC 2 cut(s) 131, 505
BstMBI GATC 2 cut(s) 73, 693
BstMWI GCNNNNNNNGC 1 cut(s) 264
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 262
BstV1I GCAGC 1 cut(s) 779
BstXI CCANNNNNNTGG 1 cut(s) 658
BsuRI GGCC 1 cut(s) 718
BtsCI GGATG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 545
BveI ACCTGC 1 cut(s) 855
CfoI GCGC 1 cut(s) 639
Cfr13I GGNCC 1 cut(s) 783
CseI GACGC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 419, 445
CviAII CATG 4 cut(s) 331, 428, 566, 640
CviJI RGCY 8 cut(s) 86, 347, 379, 495, 533, 704, 718, 824
CviKI_1 RGCY 8 cut(s) 86, 347, 379, 495, 533, 704, 718, 824
CviQI GTAC 2 cut(s) 419, 445
DdeI CTNAG 5 cut(s) 101, 348, 496, 625, 741
DpnI GATC 2 cut(s) 75, 695
DpnII GATC 2 cut(s) 73, 693
DraIII CACNNNGTG 1 cut(s) 568
EaeI YGGCCR 1 cut(s) 716
Eam1104I CTCTTC 2 cut(s) 123, 624
EarI CTCTTC 2 cut(s) 123, 624
Ecl136II GAGCTC 1 cut(s) 824
Eco24I GRGCYC 1 cut(s) 826
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 783
Eco53kI GAGCTC 1 cut(s) 824
Eco57I CTGAAG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 824
EcoRII CCWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 826
Esp3I CGTCTC 1 cut(s) 505
FaeI CATG 4 cut(s) 334, 431, 569, 643
FaiI YATR 9 cut(s) 41, 114, 292, 332, 395, 429, 567, 641, 730
FaqI GGGAC 1 cut(s) 796
FatI CATG 4 cut(s) 330, 427, 565, 639
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 3 cut(s) 534, 768, 862
FokI GGATG 1 cut(s) 216
FriOI GRGCYC 1 cut(s) 826
Fsp4HI GCNGC 3 cut(s) 534, 768, 862
FspAI RTGCGCAY 1 cut(s) 638
FspBI CTAG 3 cut(s) 168, 251, 819
FspI TGCGCA 1 cut(s) 638
GlaI GCGC 1 cut(s) 638
GluI GCNGC 3 cut(s) 534, 768, 862
HaeIII GGCC 1 cut(s) 718
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 639
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 4 cut(s) 334, 431, 569, 643
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HincII GTYRAC 2 cut(s) 123, 610
HindII GTYRAC 2 cut(s) 123, 610
HinfI GANTC 1 cut(s) 520
Hpy166II GTNNAC 2 cut(s) 123, 610
Hpy188I TCNGA 3 cut(s) 303, 474, 628
Hpy188III TCNNGA 2 cut(s) 464, 583
Hpy8I GTNNAC 2 cut(s) 123, 610
Hpy99I CGWCG 1 cut(s) 861
HpyAV CCTTC 1 cut(s) 127
HpyCH4III ACNGT 3 cut(s) 355, 404, 787
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 5 cut(s) 427, 460, 528, 541, 816
HpyF10VI GCNNNNNNNGC 1 cut(s) 264
HpyF3I CTNAG 5 cut(s) 101, 348, 496, 625, 741
HpySE526I ACGT 1 cut(s) 432
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 4 cut(s) 334, 431, 569, 643
HspAI GCGC 1 cut(s) 637
KpnI GGTACC 1 cut(s) 448
Kzo9I GATC 2 cut(s) 73, 693
LmnI GCTCC 1 cut(s) 263
Lsp1109I GCAGC 1 cut(s) 779
LweI GCATC 3 cut(s) 4, 469, 854
MaeI CTAG 3 cut(s) 168, 251, 819
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 6 cut(s) 35, 53, 186, 278, 314, 503
MalI GATC 2 cut(s) 75, 695
MboI GATC 2 cut(s) 73, 693
MboII GAAGA 8 cut(s) 16, 140, 154, 316, 607, 610, 641, 802
MhlI GDGCHC 2 cut(s) 102, 826
MlsI TGGCCA 1 cut(s) 718
MluCI AATT 6 cut(s) 157, 226, 602, 656, 671, 711
MluNI TGGCCA 1 cut(s) 718
MmeI TCCRAC 1 cut(s) 829
MnlI CCTC 5 cut(s) 76, 458, 625, 691, 828
Mox20I TGGCCA 1 cut(s) 718
Mph1103I ATGCAT 1 cut(s) 429
MroXI GAANNNNTTC 1 cut(s) 671
MscI TGGCCA 1 cut(s) 718
MseI TTAA 4 cut(s) 192, 210, 621, 647
MslI CAYNNNNRTG 1 cut(s) 727
Msp20I TGGCCA 1 cut(s) 718
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 264
NdeII GATC 2 cut(s) 73, 693
NlaIII CATG 4 cut(s) 334, 431, 569, 643
NlaIV GGNNCC 2 cut(s) 446, 784
NmuCI GTSAC 1 cut(s) 186
NsbI TGCGCA 1 cut(s) 638
NsiI ATGCAT 1 cut(s) 429
NspI RCATGY 1 cut(s) 334
PaqCI CACCTGC 1 cut(s) 855
PciI ACATGT 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 568
PkrI GCNGC 3 cut(s) 535, 769, 863
PscI ACATGT 1 cut(s) 330
Psp124BI GAGCTC 1 cut(s) 826
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 2 cut(s) 446, 784
PspPI GGNCC 1 cut(s) 783
RsaI GTAC 2 cut(s) 420, 446
RsaNI GTAC 2 cut(s) 419, 445
RseI CAYNNNNRTG 1 cut(s) 727
SacI GAGCTC 1 cut(s) 826
SalI GTCGAC 1 cut(s) 608
SaqAI TTAA 4 cut(s) 192, 210, 621, 647
SatI GCNGC 3 cut(s) 534, 768, 862
Sau3AI GATC 2 cut(s) 73, 693
Sau96I GGNCC 1 cut(s) 783
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 2 cut(s) 102, 826
SfaNI GCATC 3 cut(s) 4, 469, 854
SinI GGWCC 1 cut(s) 783
SmiMI CAYNNNNRTG 1 cut(s) 727
SpeI ACTAGT 1 cut(s) 167
Sse9I AATT 6 cut(s) 157, 226, 602, 656, 671, 711
SsiI CCGC 1 cut(s) 534
SspI AATATT 1 cut(s) 49
SspMI CTAG 3 cut(s) 168, 251, 819
SstI GAGCTC 1 cut(s) 826
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 3 cut(s) 355, 404, 787
TaiI ACGT 1 cut(s) 435
TaqI TCGA 3 cut(s) 172, 609, 696
TasI AATT 6 cut(s) 157, 226, 602, 656, 671, 711
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 4 cut(s) 192, 210, 621, 647
Tru9I TTAA 4 cut(s) 192, 210, 621, 647
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 2 cut(s) 767, 861
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 3 cut(s) 17, 323, 533
TspGWI ACGGA 2 cut(s) 216, 845
TspRI CASTG 1 cut(s) 552
Van91I CCANNNNNTGG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 783
XapI RAATTY 4 cut(s) 157, 602, 671, 711
XceI RCATGY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XmiI GTMKAC 1 cut(s) 609
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 3 cut(s) 168, 251, 819
ZraI GACGTC 1 cut(s) 433
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.