RLG00000029688

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000269
Physical Location & Seq
Forward (+)
43099773 .. 43101041
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029688

Sequence Viewer

Length: 687 bp
ATGCAGCCGAAGGTCTACACAAAGAAGGCACCCAAAATGGCAAAACCCAGCAGCTCTAGTAACTCTGATGGAGGTGCCCGAAAGAGTTCTCGAATGGCGGCCCCTAAACCGAGTAGCTCCACAACAATCTCCGATGGAGGCCCCCAAAAGAGTACTCGAATCGCCCCCTCTAAAGCATCGGCTTCAGCGATGGTCTCTGAGGTCTCGAACCAAAGTTCTCTAATTTTGGAGTCCACAAAGAAAGCTTCTATTGACGGCACCGAAGCGGTGGTTGAGGTACCTAAACTGAAACCTACTTCCAATGAAGCGTTTCGAGTTGAGATATCTCAAAAATGGAAAGAGCTTCCAGCTGAAGAGAAGGAGCAGTATGTAGTGATTGATCGATGTGATTTTAGCGATGAGAAAAAGGCAGCCTGTTCAGCAATTGGATTTGATGTGTTGTTGAAAATGTCAGGAAGGAAAATTCACCACTCTATGTTGCGTGTCCTTGTGGACTCCGTAGACCCCAATGCATGTACTATAACTATGCATGGAAAGGAGATTGAAATGGATGCAAGTGACTTTGAAAATGTGATGGGGTTGAAGAATGATGGGTCTGAGGTCGACTTTAAAGGTTCCACTAATGATCACCCTAAGTTGATGGCGATAATAGACTCCTTGTGTGGGAAGGATAAGAAGATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

229

Amino Acids

24.6

Weight (kDa)

8.55

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 4 cut(s) 28, 74, 257, 277
AccI GTMKAC 3 cut(s) 15, 501, 603
AciI CCGC 2 cut(s) 98, 266
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 2 cut(s) 168, 372
AfaI GTAC 3 cut(s) 154, 279, 517
AfiI CCNNNNNNNGG 1 cut(s) 663
AgsI TTSAA 4 cut(s) 445, 545, 566, 583
AluBI AGCT 5 cut(s) 54, 117, 245, 343, 350
AluI AGCT 5 cut(s) 54, 117, 245, 343, 350
Alw26I GTCTC 2 cut(s) 199, 208
AoxI GGCC 2 cut(s) 99, 139
ApeKI GCWGC 3 cut(s) 4, 51, 410
ApoI RAATTY 1 cut(s) 462
Asp700I GAANNNNTTC 2 cut(s) 85, 309
Asp718I GGTACC 1 cut(s) 277
AspS9I GGNCC 2 cut(s) 100, 140
AsuHPI GGTGA 2 cut(s) 458, 620
BaeGI GKGCMC 1 cut(s) 79
BanI GGYRCC 4 cut(s) 28, 74, 257, 277
BbvI GCAGC 3 cut(s) 16, 63, 422
BccI CCATC 6 cut(s) 62, 128, 184, 568, 584, 634
BceAI ACGGC 1 cut(s) 271
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 2 cut(s) 199, 208
BfaI CTAG 1 cut(s) 57
BisI GCNGC 4 cut(s) 5, 52, 99, 411
BlsI GCNGC 4 cut(s) 6, 53, 100, 412
BmcAI AGTACT 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 100, 140
BmiI GGNNCC 7 cut(s) 30, 76, 102, 142, 259, 279, 616
BmsI GCATC 2 cut(s) 185, 541
Bsa29I ATCGAT 1 cut(s) 382
BsaI GGTCTC 2 cut(s) 199, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 663
BseCI ATCGAT 1 cut(s) 382
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 1 cut(s) 663
BseMII CTCAG 2 cut(s) 189, 588
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 3 cut(s) 16, 63, 422
BseYI CCCAGC 1 cut(s) 47
BshFI GGCC 2 cut(s) 101, 141
BshNI GGYRCC 4 cut(s) 28, 74, 257, 277
BshVI ATCGAT 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 663
BsmAI GTCTC 2 cut(s) 199, 208
BsnI GGCC 2 cut(s) 101, 141
Bso31I GGTCTC 2 cut(s) 199, 208
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 3 cut(s) 379, 625, 678
BspACI CCGC 2 cut(s) 98, 266
BspANI GGCC 2 cut(s) 101, 141
BspCNI CTCAG 2 cut(s) 190, 589
BspDI ATCGAT 1 cut(s) 382
BspLI GGNNCC 7 cut(s) 30, 76, 102, 142, 259, 279, 616
BspT107I GGYRCC 4 cut(s) 28, 74, 257, 277
BspTNI GGTCTC 2 cut(s) 199, 208
BssMI GATC 3 cut(s) 379, 625, 678
Bst6I CTCTTC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 198, 597, 633
BstF5I GGATG 1 cut(s) 556
BstKTI GATC 3 cut(s) 382, 628, 681
BstMAI GTCTC 2 cut(s) 199, 208
BstMBI GATC 3 cut(s) 379, 625, 678
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNSI RCATGY 1 cut(s) 516
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 3 cut(s) 16, 63, 422
Bsu15I ATCGAT 1 cut(s) 382
BsuRI GGCC 2 cut(s) 101, 141
BsuTUI ATCGAT 1 cut(s) 382
BtgZI GCGATG 2 cut(s) 203, 411
BtsCI GGATG 1 cut(s) 556
Cfr13I GGNCC 2 cut(s) 100, 140
ClaI ATCGAT 1 cut(s) 382
Csp6I GTAC 3 cut(s) 153, 278, 516
CviAII CATG 2 cut(s) 513, 530
CviQI GTAC 3 cut(s) 153, 278, 516
DdeI CTNAG 3 cut(s) 198, 597, 633
DpnI GATC 3 cut(s) 381, 627, 680
DpnII GATC 3 cut(s) 379, 625, 678
DraI TTTAAA 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco31I GGTCTC 2 cut(s) 199, 208
Eco32I GATATC 1 cut(s) 324
Eco57I CTGAAG 2 cut(s) 168, 372
EcoO109I RGGNCCY 1 cut(s) 140
EcoRV GATATC 1 cut(s) 324
EcoT22I ATGCAT 2 cut(s) 514, 531
FaeI CATG 2 cut(s) 516, 533
FaiI YATR 6 cut(s) 369, 476, 514, 521, 527, 531
FatI CATG 2 cut(s) 512, 529
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 3 cut(s) 15, 501, 603
Fnu4HI GCNGC 4 cut(s) 5, 52, 99, 411
FokI GGATG 1 cut(s) 563
Fsp4HI GCNGC 4 cut(s) 5, 52, 99, 411
FspBI CTAG 1 cut(s) 57
GluI GCNGC 4 cut(s) 5, 52, 99, 411
GsaI CCCAGC 1 cut(s) 51
HaeIII GGCC 2 cut(s) 101, 141
Hin1II CATG 2 cut(s) 516, 533
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 4 cut(s) 159, 230, 494, 653
HphI GGTGA 2 cut(s) 458, 620
Hpy166II GTNNAC 5 cut(s) 16, 234, 493, 502, 604
Hpy188I TCNGA 4 cut(s) 67, 133, 199, 598
Hpy188III TCNNGA 3 cut(s) 90, 205, 453
Hpy8I GTNNAC 5 cut(s) 16, 234, 493, 502, 604
HpyAV CCTTC 5 cut(s) 4, 19, 352, 450, 661
HpyCH4V TGCA 4 cut(s) 4, 512, 529, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 3 cut(s) 198, 597, 633
Hsp92II CATG 2 cut(s) 516, 533
KpnI GGTACC 1 cut(s) 281
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 3 cut(s) 379, 625, 678
LmnI GCTCC 2 cut(s) 122, 361
LpnPI CCDG 4 cut(s) 61, 360, 427, 438
Lsp1109I GCAGC 3 cut(s) 16, 63, 422
LweI GCATC 2 cut(s) 185, 541
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 59, 557
MalI GATC 3 cut(s) 381, 627, 680
MboI GATC 3 cut(s) 379, 625, 678
MboII GAAGA 2 cut(s) 365, 595
MfeI CAATTG 1 cut(s) 423
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 3 cut(s) 222, 423, 462
MlyI GAGTC 3 cut(s) 239, 488, 647
MnlI CCTC 6 cut(s) 65, 131, 178, 193, 268, 592
Mph1103I ATGCAT 2 cut(s) 514, 531
MroXI GAANNNNTTC 2 cut(s) 85, 309
MseI TTAA 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 350
MunI CAATTG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 419
NdeII GATC 3 cut(s) 379, 625, 678
NlaIII CATG 2 cut(s) 516, 533
NlaIV GGNNCC 7 cut(s) 30, 76, 102, 142, 259, 279, 616
NmuCI GTSAC 1 cut(s) 557
NsiI ATGCAT 2 cut(s) 514, 531
NspI RCATGY 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 185
PdmI GAANNNNTTC 2 cut(s) 85, 309
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 4 cut(s) 6, 53, 100, 412
PleI GAGTC 3 cut(s) 238, 488, 647
PpsI GAGTC 3 cut(s) 238, 488, 647
PspFI CCCAGC 1 cut(s) 47
PspN4I GGNNCC 7 cut(s) 30, 76, 102, 142, 259, 279, 616
PspPI GGNCC 2 cut(s) 100, 140
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 3 cut(s) 154, 279, 517
RsaNI GTAC 3 cut(s) 153, 278, 516
SalI GTCGAC 1 cut(s) 602
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 4 cut(s) 5, 52, 99, 411
Sau3AI GATC 3 cut(s) 379, 625, 678
Sau96I GGNCC 2 cut(s) 100, 140
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 3 cut(s) 239, 488, 647
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 2 cut(s) 185, 541
Sse9I AATT 3 cut(s) 222, 423, 462
SsiI CCGC 2 cut(s) 98, 266
SspMI CTAG 1 cut(s) 57
TaqI TCGA 6 cut(s) 91, 157, 206, 313, 382, 603
TasI AATT 3 cut(s) 222, 423, 462
TatI WGTACW 2 cut(s) 152, 515
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 3 cut(s) 4, 51, 410
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 1 cut(s) 487
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 516
XmiI GTMKAC 3 cut(s) 15, 501, 603
XmnI GAANNNNTTC 2 cut(s) 85, 309
XspI CTAG 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 154
Zsp2I ATGCAT 2 cut(s) 514, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.