FvH4_5g24070

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000269
Physical Location & Seq
Forward (+)
15359672 .. 15362644
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24070.t1

Sequence Viewer

Length: 675 bp
ATGGCTTTGAGACGGTGGAAAGCACTCCTTCTAAAGGTGGTCAAGCGTCATAAACTTGATGTTGGCTTGGTTGCTCCTCGTTCCTCATTGAAAGATCCAAAGGACCTTGAGGCGCAGATTGGCCCCTTCAAAGTCAATGTCGATAGAGGAGAGACTGACAAGAGACTTATACTCTTTGTGTACGACACAGAGACGGACTTGCAACTGAGCAAAACCATCATTGATAGTGCTAGTGGCGGCATCTTTACCACTAGAGATTCTACGATGCAGTACAGTAAACAGTTATCTTCAGGACATGTTGTCAGCGGTGTAAGTTCGAAGGAGTTGGGTGTGAGAAGATTTGACAATGACATTCCTACATGCAAAAAGATTTTCATACCCATGCACGACATAAAACATTGGTACCTGTTGGTGGTGCGTCCTGATGTCCAAATAGCTGAAGTGTGGGATAGCTTGGGATGTAGCAGGAGACGGAAGAATCAGTGCAAAACCGTTCTCTTAGCACTTGACATGATTTACGGAAGTGTGGAATTCACTACGAAACCCTTCGAGCAGGAGAAGAAAAAGTTTGCATACTTCACCCTCGACGAGCCAGCTCATTCCCCAAAACAGAAGGGTGGAGCTGATAGTGGGATATTTACAATCAAACACATGCAGAACTATGGATCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

225

Amino Acids

25.45

Weight (kDa)

9.4

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 111 - 219 4.5e-10 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 402
AciI CCGC 2 cut(s) 237, 306
AclWI GGATC 2 cut(s) 89, 673
AcsI RAATTY 1 cut(s) 530
AcuI CTGAAG 2 cut(s) 273, 459
AfaI GTAC 3 cut(s) 182, 272, 404
AfiI CCNNNNNNNGG 2 cut(s) 34, 412
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 2 cut(s) 91, 130
AhdI GACNNNNNGTC 1 cut(s) 299
AluBI AGCT 4 cut(s) 437, 453, 596, 623
AluI AGCT 4 cut(s) 437, 453, 596, 623
Alw26I GTCTC 5 cut(s) 4, 146, 157, 185, 463
AlwI GGATC 2 cut(s) 89, 673
AoxI GGCC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 530
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
Asp700I GAANNNNTTC 1 cut(s) 545
Asp718I GGTACC 1 cut(s) 402
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 103, 122
AsuHPI GGTGA 1 cut(s) 571
AsuII TTCGAA 1 cut(s) 317
AvaII GGWCC 1 cut(s) 103
BaeI ACNNNNGTAYC 2 cut(s) 386, 419
BanI GGYRCC 1 cut(s) 402
BccI CCATC 1 cut(s) 224
BcoDI GTCTC 5 cut(s) 4, 146, 157, 185, 463
BfaI CTAG 2 cut(s) 231, 252
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 103
BmeRI GACNNNNNGTC 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 103, 122
BmiI GGNNCC 2 cut(s) 124, 404
BmsI GCATC 2 cut(s) 249, 255
Bpu14I TTCGAA 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 412
BseGI GGATG 1 cut(s) 464
BseLI CCNNNNNNNGG 2 cut(s) 34, 412
BseMII CTCAG 1 cut(s) 197
BseRI GAGGAG 2 cut(s) 66, 162
BshFI GGCC 1 cut(s) 123
BshNI GGYRCC 1 cut(s) 402
BslI CCNNNNNNNGG 2 cut(s) 34, 412
BsmAI GTCTC 5 cut(s) 4, 146, 157, 185, 463
BsmBI CGTCTC 3 cut(s) 4, 185, 463
BsnI GGCC 1 cut(s) 123
Bsp119I TTCGAA 1 cut(s) 317
Bsp143I GATC 2 cut(s) 94, 665
BspACI CCGC 2 cut(s) 237, 306
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 124, 404
BspPI GGATC 2 cut(s) 89, 673
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 402
BssMI GATC 2 cut(s) 94, 665
Bst4CI ACNGT 4 cut(s) 15, 275, 282, 493
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 2 cut(s) 206, 499
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 464
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 2 cut(s) 97, 668
BstMAI GTCTC 5 cut(s) 4, 146, 157, 185, 463
BstMBI GATC 2 cut(s) 94, 665
BstNSI RCATGY 3 cut(s) 299, 363, 655
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 464
BtsIMutI CAGTG 1 cut(s) 488
Cac8I GCNNGC 1 cut(s) 594
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 103, 122
CseI GACGC 2 cut(s) 35, 407
Csp6I GTAC 3 cut(s) 181, 271, 403
CviAII CATG 5 cut(s) 296, 360, 382, 511, 652
CviJI RGCY 8 cut(s) 5, 66, 123, 437, 453, 592, 596, 623
CviKI_1 RGCY 8 cut(s) 5, 66, 123, 437, 453, 592, 596, 623
CviQI GTAC 3 cut(s) 181, 271, 403
DdeI CTNAG 2 cut(s) 206, 499
DpnI GATC 2 cut(s) 96, 667
DpnII GATC 2 cut(s) 94, 665
DriI GACNNNNNGTC 1 cut(s) 299
Eam1105I GACNNNNNGTC 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 103
Eco57I CTGAAG 2 cut(s) 273, 459
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 530
Esp3I CGTCTC 3 cut(s) 4, 185, 463
FaeI CATG 5 cut(s) 299, 363, 385, 514, 655
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 5 cut(s) 295, 359, 381, 510, 651
Fnu4HI GCNGC 1 cut(s) 238
FokI GGATG 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 2 cut(s) 231, 252
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 238
HaeIII GGCC 1 cut(s) 123
HgaI GACGC 2 cut(s) 35, 407
HhaI GCGC 1 cut(s) 115
Hin1II CATG 5 cut(s) 299, 363, 385, 514, 655
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 2 cut(s) 257, 478
HphI GGTGA 1 cut(s) 571
Hpy166II GTNNAC 2 cut(s) 181, 278
Hpy188I TCNGA 1 cut(s) 670
Hpy188III TCNNGA 2 cut(s) 291, 422
Hpy8I GTNNAC 2 cut(s) 181, 278
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 5 cut(s) 38, 136, 313, 556, 607
HpyCH4III ACNGT 4 cut(s) 15, 275, 282, 493
HpyCH4V TGCA 7 cut(s) 202, 268, 363, 385, 486, 572, 655
HpyF3I CTNAG 2 cut(s) 206, 499
Hsp92II CATG 5 cut(s) 299, 363, 385, 514, 655
HspAI GCGC 1 cut(s) 113
KpnI GGTACC 1 cut(s) 406
Kzo9I GATC 2 cut(s) 94, 665
LmnI GCTCC 2 cut(s) 79, 620
LpnPI CCDG 6 cut(s) 276, 419, 435, 451, 539, 606
LweI GCATC 2 cut(s) 249, 255
MaeI CTAG 2 cut(s) 231, 252
MalI GATC 2 cut(s) 96, 667
MboI GATC 2 cut(s) 94, 665
MboII GAAGA 4 cut(s) 279, 348, 487, 571
MflI RGATCY 1 cut(s) 94
MluCI AATT 1 cut(s) 530
MnlI CCTC 5 cut(s) 87, 94, 103, 140, 593
MroXI GAANNNNTTC 1 cut(s) 545
MslI CAYNNNNRTG 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 306
NdeII GATC 2 cut(s) 94, 665
NlaIII CATG 5 cut(s) 299, 363, 385, 514, 655
NlaIV GGNNCC 2 cut(s) 124, 404
NspI RCATGY 3 cut(s) 299, 363, 655
NspV TTCGAA 1 cut(s) 317
PciI ACATGT 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 257, 478
PkrI GCNGC 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 103
PscI ACATGT 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 124, 404
PspPI GGNCC 2 cut(s) 103, 122
PspPPI RGGWCCY 1 cut(s) 103
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 3 cut(s) 182, 272, 404
RsaNI GTAC 3 cut(s) 181, 271, 403
RseI CAYNNNNRTG 1 cut(s) 380
SatI GCNGC 1 cut(s) 238
Sau3AI GATC 2 cut(s) 94, 665
Sau96I GGNCC 2 cut(s) 103, 122
SetI ASST 7 cut(s) 39, 108, 408, 439, 455, 598, 625
SfaNI GCATC 2 cut(s) 249, 255
SfuI TTCGAA 1 cut(s) 317
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 530
SsiI CCGC 2 cut(s) 237, 306
SspMI CTAG 2 cut(s) 231, 252
TaaI ACNGT 4 cut(s) 15, 275, 282, 493
TaqI TCGA 4 cut(s) 141, 317, 549, 585
TasI AATT 1 cut(s) 530
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 2 cut(s) 257, 478
TscAI CASTG 1 cut(s) 488
TspDTI ATGAA 1 cut(s) 364
TspGWI ACGGA 3 cut(s) 209, 487, 534
TspRI CASTG 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 103
XagI CCTNNNNNAGG 1 cut(s) 32
XapI RAATTY 1 cut(s) 530
XceI RCATGY 3 cut(s) 299, 363, 655
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 2 cut(s) 231, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.