FvH4_3g31781

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000269
Physical Location & Seq
Forward (+)
26671715 .. 26672663
949 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31781.t1

Sequence Viewer

Length: 486 bp
ATGCATACCTCGCCTAGTTGGCGCCTAGGTGGCAAGGACTCTAAGACTGACCCTCCGACTCAAGGGGCTGATCAGAGCCAGAATTCAGGGGTAGACGAGGGAGATACGAGAAGGAGTAGTAGGCTCCAGGGTCATGTTCCAAGCAGCAGCGAAAACACAATCTCAGACTGTCGGACCACAGTTATTGTAGGATCGAAATCGGCGGCCAATGAAGCAAACCCTAAACGAATTACAAAAGAAGTTGTGGCTGGGTCCTCGAGACCCGAAATCGGGGAAGGGGCAAAGGAATCGGTTCATGTTGAGGAAGTAGTACCTCAGAACCAGATTGAAGTTCATACCACTCTGCGTGTTGAAACCGAGATGCATGTCAATGAAGATGTTATGCAAAGCAGAAAGGACGGGAGCTTCATCTCTCCACGCCTATTTGTTCATATTGGGAAGAAGAGGAGGGCCAATCATGGTTCGAGCTTGTTCAATTTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.62

Weight (kDa)

7.07

Isoelectric Point (pI)

69.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 21
AccI GTMKAC 1 cut(s) 93
AciI CCGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 22
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 3 cut(s) 62, 269, 270
AgsI TTSAA 3 cut(s) 329, 353, 475
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 2 cut(s) 405, 468
AluI AGCT 2 cut(s) 405, 468
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 1 cut(s) 199
Ama87I CYCGRG 1 cut(s) 256
AoxI GGCC 2 cut(s) 204, 450
ApeKI GCWGC 2 cut(s) 144, 147
ApoI RAATTY 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 291
AspA2I CCTAGG 1 cut(s) 25
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 3 cut(s) 174, 252, 450
AvaI CYCGRG 1 cut(s) 256
AvaII GGWCC 2 cut(s) 174, 252
AvrII CCTAGG 1 cut(s) 25
BanI GGYRCC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 156, 159
BcgI CGANNNNNNTGC 2 cut(s) 270, 304
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 2 cut(s) 15, 26
BfoI RGCGCY 1 cut(s) 25
BglI GCCNNNNNGGC 2 cut(s) 19, 30
BisI GCNGC 3 cut(s) 145, 148, 204
BlnI CCTAGG 1 cut(s) 25
BlsI GCNGC 3 cut(s) 146, 149, 205
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 2 cut(s) 174, 252
BmeT110I CYCGRG 1 cut(s) 256
BmgT120I GGNCC 3 cut(s) 174, 252, 450
BmiI GGNNCC 3 cut(s) 23, 125, 253
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 196
BsaHI GRCGYC 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 25, 127
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 269, 270
Bse8I GATNNNNATC 1 cut(s) 196
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 25, 127
BseJI GATNNNNATC 1 cut(s) 196
BseLI CCNNNNNNNGG 3 cut(s) 62, 269, 270
BseMII CTCAG 2 cut(s) 177, 329
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 2 cut(s) 156, 159
BseYI CCCAGC 1 cut(s) 248
BshFI GGCC 2 cut(s) 206, 452
BshNI GGYRCC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 256
BslI CCNNNNNNNGG 3 cut(s) 62, 269, 270
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 2 cut(s) 206, 452
Bso31I GGTCTC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 256
Bsp143I GATC 2 cut(s) 70, 191
BspACI CCGC 1 cut(s) 203
BspANI GGCC 2 cut(s) 206, 452
BspCNI CTCAG 2 cut(s) 176, 328
BspLI GGNNCC 3 cut(s) 23, 125, 253
BspPI GGATC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 25, 127
BssMI GATC 2 cut(s) 70, 191
BssNI GRCGYC 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 170, 181
Bst6I CTCTTC 1 cut(s) 437
BstACI GRCGYC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 42, 163, 315
BstH2I RGCGCY 1 cut(s) 25
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 2 cut(s) 73, 194
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 2 cut(s) 70, 191
BstMWI GCNNNNNNNGC 4 cut(s) 10, 19, 30, 212
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 156, 159
BsuRI GGCC 2 cut(s) 206, 452
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 3 cut(s) 174, 252, 450
Csp6I GTAC 1 cut(s) 311
CspCI CAANNNNNGTGG 2 cut(s) 166, 201
CviAII CATG 5 cut(s) 134, 296, 365, 458, 481
CviJI RGCY 8 cut(s) 68, 78, 124, 206, 248, 405, 452, 468
CviKI_1 RGCY 8 cut(s) 68, 78, 124, 206, 248, 405, 452, 468
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 3 cut(s) 42, 163, 315
DinI GGCGCC 1 cut(s) 23
DpnI GATC 2 cut(s) 72, 193
DpnII GATC 2 cut(s) 70, 191
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 253
Eco47I GGWCC 2 cut(s) 174, 252
Eco88I CYCGRG 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 25
EcoT22I ATGCAT 2 cut(s) 6, 366
EgeI GGCGCC 1 cut(s) 23
EheI GGCGCC 1 cut(s) 23
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 5 cut(s) 137, 299, 368, 461, 484
FaiI YATR 9 cut(s) 6, 135, 297, 336, 366, 383, 432, 459, 482
FatI CATG 5 cut(s) 133, 295, 364, 457, 480
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 145, 148, 204
Fsp4HI GCNGC 3 cut(s) 145, 148, 204
FspBI CTAG 2 cut(s) 15, 26
GlaI GCGC 1 cut(s) 23
GluI GCNGC 3 cut(s) 145, 148, 204
GsaI CCCAGC 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 25
HaeIII GGCC 2 cut(s) 206, 452
HhaI GCGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 22
Hin1II CATG 5 cut(s) 137, 299, 368, 461, 484
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HinfI GANTC 3 cut(s) 38, 58, 287
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 5 cut(s) 57, 75, 166, 174, 318
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 105, 269
HpyCH4III ACNGT 2 cut(s) 170, 181
HpyCH4V TGCA 3 cut(s) 4, 364, 385
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 19, 30, 212
HpyF3I CTNAG 3 cut(s) 42, 163, 315
Hsp92I GRCGYC 1 cut(s) 22
Hsp92II CATG 5 cut(s) 137, 299, 368, 461, 484
HspAI GCGC 1 cut(s) 22
KasI GGCGCC 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 2 cut(s) 70, 191
LmnI GCTCC 2 cut(s) 129, 402
LpnPI CCDG 6 cut(s) 72, 92, 113, 140, 234, 335
Lsp1109I GCAGC 2 cut(s) 156, 159
LweI GCATC 1 cut(s) 351
MaeI CTAG 2 cut(s) 15, 26
MalI GATC 2 cut(s) 72, 193
MboI GATC 2 cut(s) 70, 191
MboII GAAGA 3 cut(s) 386, 451, 454
MluCI AATT 3 cut(s) 82, 228, 475
Mly113I GGCGCC 1 cut(s) 22
MlyI GAGTC 2 cut(s) 32, 52
MmeI TCCRAC 2 cut(s) 80, 152
MnlI CCTC 8 cut(s) 19, 63, 91, 265, 295, 324, 438, 441
Mph1103I ATGCAT 2 cut(s) 6, 366
MroXI GAANNNNTTC 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 4 cut(s) 10, 19, 30, 212
NarI GGCGCC 1 cut(s) 22
NdeII GATC 2 cut(s) 70, 191
NlaIII CATG 5 cut(s) 137, 299, 368, 461, 484
NlaIV GGNNCC 3 cut(s) 23, 125, 253
NsiI ATGCAT 2 cut(s) 6, 366
NspI RCATGY 1 cut(s) 368
PaeR7I CTCGAG 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 3 cut(s) 146, 149, 205
PleI GAGTC 2 cut(s) 32, 52
PluTI GGCGCC 1 cut(s) 25
PpsI GAGTC 2 cut(s) 32, 52
PpuMI RGGWCCY 1 cut(s) 252
Psp5II RGGWCCY 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 3 cut(s) 23, 125, 253
PspPI GGNCC 3 cut(s) 174, 252, 450
PspPPI RGGWCCY 1 cut(s) 252
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 369
SatI GCNGC 3 cut(s) 145, 148, 204
Sau3AI GATC 2 cut(s) 70, 191
Sau96I GGNCC 3 cut(s) 174, 252, 450
SchI GAGTC 2 cut(s) 32, 52
ScrFI CCNGG 1 cut(s) 128
SetI ASST 5 cut(s) 11, 31, 316, 407, 470
SfaNI GCATC 1 cut(s) 351
SfoI GGCGCC 1 cut(s) 23
Sfr274I CTCGAG 1 cut(s) 256
SinI GGWCC 2 cut(s) 174, 252
SlaI CTCGAG 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 60, 256
SmoI CTYRAG 2 cut(s) 60, 256
Sse9I AATT 3 cut(s) 82, 228, 475
SsiI CCGC 1 cut(s) 203
SspDI GGCGCC 1 cut(s) 21
SspMI CTAG 2 cut(s) 15, 26
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 2 cut(s) 170, 181
TaqI TCGA 3 cut(s) 194, 257, 464
TasI AATT 3 cut(s) 82, 228, 475
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 287
TseI GCWGC 2 cut(s) 144, 147
TspDTI ATGAA 7 cut(s) 225, 284, 323, 387, 397, 419, 469
VpaK11BI GGWCC 2 cut(s) 174, 252
XapI RAATTY 1 cut(s) 82
XceI RCATGY 1 cut(s) 368
XhoI CTCGAG 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 2 cut(s) 15, 26
Zsp2I ATGCAT 2 cut(s) 6, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.