Rroxscaffold_1G00053720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000269
Physical Location & Seq
Reverse (-)
74910597 .. 74912398
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053720.1

Sequence Viewer

Length: 345 bp
ATGATGGGAAAGATGGACAAAGTCTTGAGTATGCTGAACACTCGACGCACAAAATGTGAATGTCAATCGAACCTTCAAACTAATGGCTTAGCAGAAAAAACAAGCCCCAAGAAAGTTTCAAAAAGAAAGTCGAAGAGCAACGGGAGGTATGAAGTTATGAAGTTGTGGGCAATAGAAGCCATCAAAACTCGGCCACCACCAATATGTTCTACACCTAAGACGGCACAAAGGGAAACTAAAGCAGCACCAAAGAAAGGGACGGTGAAGAACCCAATCGTCCAACCACCTCGCACTAGAGCTCAATCCAAGAGGGGTGTGGCATCAAATGTCCGTCGTAGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.79

Weight (kDa)

11.28

Isoelectric Point (pI)

51.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 330
Acc36I ACCTGC 1 cut(s) 330
AcoI YGGCCR 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 2 cut(s) 77, 120
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
Alw21I GWGCWC 1 cut(s) 301
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AsuHPI GGTGA 1 cut(s) 274
BanII GRGCYC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 254
BccI CCATC 2 cut(s) 7, 188
BceAI ACGGC 1 cut(s) 237
BfaI CTAG 1 cut(s) 294
BfuAI ACCTGC 1 cut(s) 330
BisI GCNGC 1 cut(s) 243
BlpI GCTNAGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 244
BmsI GCATC 1 cut(s) 329
Bpu1102I GCTNAGC 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 254
BshFI GGCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 301
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 301
Bsp1720I GCTNAGC 1 cut(s) 88
BspANI GGCC 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 330
BspQI GCTCTTC 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 262
Bst6I CTCTTC 1 cut(s) 128
BstDEI CTNAG 2 cut(s) 88, 216
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 193
BveI ACCTGC 1 cut(s) 330
CseI GACGC 1 cut(s) 54
CviJI RGCY 5 cut(s) 87, 105, 179, 193, 299
CviKI_1 RGCY 5 cut(s) 87, 105, 179, 193, 299
DdeI CTNAG 2 cut(s) 88, 216
EaeI YGGCCR 1 cut(s) 191
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 301
FaiI YATR 4 cut(s) 32, 150, 158, 205
FaqI GGGAC 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 294
GluI GCNGC 1 cut(s) 243
HaeIII GGCC 1 cut(s) 193
HgaI GACGC 1 cut(s) 54
HphI GGTGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 25
Hpy99I CGWCG 2 cut(s) 48, 336
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 88, 216
LguI GCTCTTC 1 cut(s) 128
LpnPI CCDG 1 cut(s) 325
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 1 cut(s) 329
MaeI CTAG 1 cut(s) 294
MboII GAAGA 2 cut(s) 145, 277
MhlI GDGCHC 1 cut(s) 301
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 3 cut(s) 138, 297, 303
MslI CAYNNNNRTG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 176
NmeAIII GCCGAG 1 cut(s) 169
PaqCI CACCTGC 1 cut(s) 330
PciSI GCTCTTC 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 301
PsyI GACNNNGTC 1 cut(s) 20
RseI CAYNNNNRTG 1 cut(s) 202
SacI GAGCTC 1 cut(s) 301
SapI GCTCTTC 1 cut(s) 128
SatI GCNGC 1 cut(s) 243
SduI GDGCHC 1 cut(s) 301
SetI ASST 6 cut(s) 75, 149, 217, 289, 301, 344
SfaNI GCATC 1 cut(s) 329
SgeI CNNG 9 cut(s) 37, 54, 114, 121, 154, 201, 300, 306, 319
SmiMI CAYNNNNRTG 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SspMI CTAG 1 cut(s) 294
SstI GAGCTC 1 cut(s) 301
TaaI ACNGT 1 cut(s) 262
TaqI TCGA 3 cut(s) 43, 68, 131
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 2 cut(s) 165, 173
TspGWI ACGGA 1 cut(s) 320
Tth111I GACNNNGTC 1 cut(s) 20
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.