Rh4DG157700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000269
Physical Location & Seq
Reverse (-)
31455604 .. 31456014
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG157700.1

Sequence Viewer

Length: 411 bp
ATGTCAAAAAGGAAAATGCACCACTCTATGTTGCGTGTCCTTGTGGACTCCGTAGACCCTAAACCATGCACTATAACCATGCACGAAAAGGAGATTGAAATGGATGCAAGTAACTTTGAAAATGTGATGGGGTTGAAGAATGCTGGGTCGGAGCTCACCTTTAAATGTTCCACTAATGTTCACCCTGAATTGATGGCGATAATAGACTCATTGTGTGGGAAGGATAAGAAGATCAGTTTAAGGGACGTGCATACCTACCTGAAAGATACAGAAGAAGTTGGCGACAAGTTCAAGCGCTTGTTTGTGTTGTTAACAATGAGCACCATCCTTAGCCCATCTGCCTCACTGACGGTACCAGAGAAGTGGCTGCTGGCCCTGAAGGAAACTTGCCGAATTAAAACTTTAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

136

Amino Acids

15.42

Weight (kDa)

8.34

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 352
AccB1I GGYRCC 1 cut(s) 352
AccI GTMKAC 1 cut(s) 54
AcuI CTGAAG 1 cut(s) 398
AfaI GTAC 1 cut(s) 354
AfeI AGCGCT 1 cut(s) 296
AgsI TTSAA 4 cut(s) 98, 119, 136, 292
AjiI CACGTC 1 cut(s) 247
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 2 cut(s) 156, 323
Aor51HI AGCGCT 1 cut(s) 296
AoxI GGCC 1 cut(s) 372
ApeKI GCWGC 1 cut(s) 367
Asp718I GGTACC 1 cut(s) 352
AspLEI GCGC 1 cut(s) 297
AspS9I GGNCC 1 cut(s) 373
AsuHPI GGTGA 2 cut(s) 148, 173
BanI GGYRCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 156
Bbv12I GWGCWC 2 cut(s) 156, 323
BbvI GCAGC 1 cut(s) 354
BccI CCATC 4 cut(s) 121, 187, 332, 343
BfaI CTAG 1 cut(s) 409
BfoI RGCGCY 1 cut(s) 298
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
BmgBI CACGTC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 354
BmsI GCATC 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 329
BseGI GGATG 2 cut(s) 109, 324
BseXI GCAGC 1 cut(s) 354
BseYI CCCAGC 1 cut(s) 143
BshFI GGCC 1 cut(s) 374
BshNI GGYRCC 1 cut(s) 352
BsiHKAI GWGCWC 2 cut(s) 156, 323
BslFI GGGAC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 374
Bsp1286I GDGCHC 2 cut(s) 156, 323
Bsp143I GATC 1 cut(s) 231
BspANI GGCC 1 cut(s) 374
BspLI GGNNCC 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 352
BssMI GATC 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 352
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 329
BstF5I GGATG 2 cut(s) 109, 324
BstH2I RGCGCY 1 cut(s) 298
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 1 cut(s) 234
BstMBI GATC 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 354
BstXI CCANNNNNNTGG 1 cut(s) 363
BsuRI GGCC 1 cut(s) 374
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 2 cut(s) 109, 324
BtsIMutI CAGTG 1 cut(s) 344
Cac8I GCNNGC 1 cut(s) 372
CfoI GCGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 373
Csp6I GTAC 1 cut(s) 353
CviAII CATG 2 cut(s) 66, 79
CviJI RGCY 4 cut(s) 154, 333, 367, 374
CviKI_1 RGCY 4 cut(s) 154, 333, 367, 374
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 1 cut(s) 329
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
DraI TTTAAA 2 cut(s) 163, 405
Ecl136II GAGCTC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 156
Eco47III AGCGCT 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 156
FaeI CATG 2 cut(s) 69, 82
FaiI YATR 5 cut(s) 29, 67, 74, 80, 252
FaqI GGGAC 1 cut(s) 257
FatI CATG 2 cut(s) 65, 78
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 2 cut(s) 116, 311
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 1 cut(s) 409
GlaI GCGC 1 cut(s) 296
GluI GCNGC 1 cut(s) 368
GsaI CCCAGC 1 cut(s) 147
HaeII RGCGCY 1 cut(s) 298
HaeIII GGCC 1 cut(s) 374
HhaI GCGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 69, 82
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 2 cut(s) 47, 206
HpaI GTTAAC 1 cut(s) 312
HphI GGTGA 2 cut(s) 148, 173
Hpy166II GTNNAC 4 cut(s) 46, 55, 181, 312
Hpy188I TCNGA 1 cut(s) 151
Hpy8I GTNNAC 4 cut(s) 46, 55, 181, 312
HpyAV CCTTC 2 cut(s) 214, 373
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 5 cut(s) 19, 69, 82, 107, 250
HpyF3I CTNAG 1 cut(s) 329
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 2 cut(s) 69, 82
HspAI GCGC 1 cut(s) 295
KpnI GGTACC 1 cut(s) 356
KspAI GTTAAC 1 cut(s) 312
Kzo9I GATC 1 cut(s) 231
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 6 cut(s) 129, 198, 272, 356, 369, 389
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 409
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 3 cut(s) 148, 241, 284
MhlI GDGCHC 2 cut(s) 156, 323
MluCI AATT 2 cut(s) 188, 393
MlyI GAGTC 2 cut(s) 41, 200
MmeI TCCRAC 1 cut(s) 129
MnlI CCTC 1 cut(s) 352
MseI TTAA 5 cut(s) 162, 239, 311, 396, 404
Mva1269I GAATGC 1 cut(s) 145
NdeII GATC 1 cut(s) 231
NlaIII CATG 2 cut(s) 69, 82
NlaIV GGNNCC 1 cut(s) 354
PctI GAATGC 1 cut(s) 145
PkrI GCNGC 1 cut(s) 369
PleI GAGTC 2 cut(s) 41, 200
PpsI GAGTC 2 cut(s) 41, 200
Psp124BI GAGCTC 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 1 cut(s) 373
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 5 cut(s) 162, 239, 311, 396, 404
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 373
SchI GAGTC 2 cut(s) 41, 200
SduI GDGCHC 2 cut(s) 156, 323
SetI ASST 5 cut(s) 156, 161, 249, 257, 261
SfaNI GCATC 1 cut(s) 94
Sse9I AATT 2 cut(s) 188, 393
SspMI CTAG 1 cut(s) 409
SstI GAGCTC 1 cut(s) 156
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 249
TasI AATT 2 cut(s) 188, 393
Tru1I TTAA 5 cut(s) 162, 239, 311, 396, 404
Tru9I TTAA 5 cut(s) 162, 239, 311, 396, 404
TscAI CASTG 1 cut(s) 351
TseI GCWGC 1 cut(s) 367
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.