Rroxscaffold_2G00133480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000269
Physical Location & Seq
Forward (+)
70803487 .. 70805519
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133480.1

Sequence Viewer

Length: 444 bp
ATGGGTGAACAAGCAAGGTGGTTTGCTTTGGATGAAAATATTCTTGTGGCAAAGGTTGGCAATCATGTTGGTAGTGGAGATCAGGCCAAAGCATATGGGGTGATTAAGAAAGAAATGTCCGACTTGGTTGCTAAAGTGAATGGGTTGGAAAATAATATGTGCAATCCGAGAGATGATATGATGGGAAAGATGGACAAAGTCTTGAAGGTACGCATGGACTTAACCATTGAATTGGTAAGGAACAAATTCAATGAGTGCTGGAAATGGATCGATGAAGCCATCAAAACTCGGCCACCACCAATATGTTCTACACCTAAGACGGCACAAAGGGAAACTAAAGCAGCACCGAAGAAATGGACCGTGAAGAACCCAATCGTCCGACCACCTCGCACTAGAGCTCAATCCAAGAGGGGTGTGGCATCAAATGTCCGTCGTAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.76

Weight (kDa)

10.19

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 290
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 1 cut(s) 210
AgsI TTSAA 3 cut(s) 205, 230, 250
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw21I GWGCWC 1 cut(s) 400
AlwI GGATC 1 cut(s) 275
AoxI GGCC 2 cut(s) 84, 290
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 245
Asp700I GAANNNNTTC 2 cut(s) 39, 245
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 17, 112
AvaII GGWCC 1 cut(s) 357
BanII GRGCYC 1 cut(s) 400
Bbv12I GWGCWC 1 cut(s) 400
BbvI GCAGC 1 cut(s) 353
BccI CCATC 3 cut(s) 175, 184, 287
BceAI ACGGC 1 cut(s) 336
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BfaI CTAG 1 cut(s) 393
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 357
BmsI GCATC 1 cut(s) 428
Bsa29I ATCGAT 1 cut(s) 270
BseCI ATCGAT 1 cut(s) 270
BseGI GGATG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 353
BshFI GGCC 2 cut(s) 86, 292
BshVI ATCGAT 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 400
BsnI GGCC 2 cut(s) 86, 292
Bsp1286I GDGCHC 1 cut(s) 400
Bsp143I GATC 2 cut(s) 79, 267
BspANI GGCC 2 cut(s) 86, 292
BspDI ATCGAT 1 cut(s) 270
BspPI GGATC 1 cut(s) 275
BssMI GATC 2 cut(s) 79, 267
Bst4CI ACNGT 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 2 cut(s) 82, 270
BstMBI GATC 2 cut(s) 79, 267
BstV1I GCAGC 1 cut(s) 353
BstXI CCANNNNNNTGG 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 2 cut(s) 86, 292
BsuTUI ATCGAT 1 cut(s) 270
BtsCI GGATG 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 270
Csp6I GTAC 1 cut(s) 209
CspCI CAANNNNNGTGG 1 cut(s) 34
CviAII CATG 2 cut(s) 65, 214
CviJI RGCY 4 cut(s) 86, 278, 292, 398
CviKI_1 RGCY 4 cut(s) 86, 278, 292, 398
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 1 cut(s) 315
DpnI GATC 2 cut(s) 81, 269
DpnII GATC 2 cut(s) 79, 267
EaeI YGGCCR 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 398
EcoT38I GRGCYC 1 cut(s) 400
FaeI CATG 2 cut(s) 68, 217
FaiI YATR 7 cut(s) 66, 94, 96, 158, 179, 215, 304
FatI CATG 2 cut(s) 64, 213
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 400
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 393
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 2 cut(s) 86, 292
Hin1II CATG 2 cut(s) 68, 217
HphI GGTGA 2 cut(s) 17, 112
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 3 cut(s) 121, 168, 380
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 8
Hpy99I CGWCG 1 cut(s) 435
HpyAV CCTTC 2 cut(s) 199, 432
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4V TGCA 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 2 cut(s) 68, 217
Kzo9I GATC 2 cut(s) 79, 267
LpnPI CCDG 2 cut(s) 68, 244
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 1 cut(s) 428
MaeI CTAG 1 cut(s) 393
MalI GATC 2 cut(s) 81, 269
MboI GATC 2 cut(s) 79, 267
MboII GAAGA 2 cut(s) 361, 376
MhlI GDGCHC 1 cut(s) 400
MluCI AATT 2 cut(s) 230, 245
MmeI TCCRAC 3 cut(s) 126, 144, 403
MnlI CCTC 2 cut(s) 396, 402
MroXI GAANNNNTTC 2 cut(s) 39, 245
MseI TTAA 2 cut(s) 105, 221
MslI CAYNNNNRTG 1 cut(s) 301
NdeI CATATG 1 cut(s) 94
NdeII GATC 2 cut(s) 79, 267
NlaIII CATG 2 cut(s) 68, 217
NmeAIII GCCGAG 1 cut(s) 268
PdmI GAANNNNTTC 2 cut(s) 39, 245
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 343
Psp124BI GAGCTC 1 cut(s) 400
PspPI GGNCC 1 cut(s) 357
PsyI GACNNNGTC 1 cut(s) 197
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 301
SacI GAGCTC 1 cut(s) 400
SaqAI TTAA 2 cut(s) 105, 221
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 79, 267
Sau96I GGNCC 1 cut(s) 357
SduI GDGCHC 1 cut(s) 400
SetI ASST 7 cut(s) 20, 57, 210, 316, 388, 400, 443
SfaNI GCATC 1 cut(s) 428
SinI GGWCC 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 301
Sse9I AATT 2 cut(s) 230, 245
SspI AATATT 1 cut(s) 40
SspMI CTAG 1 cut(s) 393
SstI GAGCTC 1 cut(s) 400
TaaI ACNGT 1 cut(s) 361
TaqI TCGA 1 cut(s) 270
TasI AATT 2 cut(s) 230, 245
Tru1I TTAA 2 cut(s) 105, 221
Tru9I TTAA 2 cut(s) 105, 221
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 48, 288
TspGWI ACGGA 1 cut(s) 419
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 357
XapI RAATTY 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XmnI GAANNNNTTC 2 cut(s) 39, 245
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.