Rh7CG338900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000269
Physical Location & Seq
Reverse (-)
37919124 .. 37920338
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG338900.1

Sequence Viewer

Length: 834 bp
ATGCCGCCGAAGGTCTACACAAAGAAGGCACCCAAAAGGGCGAAACCGAGCAGCTCCAGTAACTTTGATGGAGGTGCCCGAAAGAGTTCTGGAATGGAGGCCCTAAACCGAGCAGCTCCACAACGATCTCCGATGGAGGCCCCCGAAAGAGTACTCAAATCGCTGCCTCCAAAGCATCGGCTTCAACGACTGTCTCTGAGGTCTCGAACCAAAATTCTCCAATTTTGGAGTCCACAAAGAAAGCTTCTATTAACGGCACCGAAGCGGTGGTTGAGCCAAAGAGGTGAAGGATCGAAAGAAGCTCATCATGAAGAAGAAAGCCTCTGGTCGTTCCATGAGCTTTTTGAACTACCTTTTCGAGTTGAGATATCTCAAAAATGGAAAGAGCTTCCAGCTGAAGAGAAGGAACAGTATGTAGTGATTGATCGATGTGGTCAGTCATCAGTTTCTGAGGAGGAGTTGCTTGAGTTGGTTCGGATTGATACCCCTTGCTCTCCAGACCGCTTCAGGTCTTTGGTTGCAGATTTTAGCGATGAGAAAAAGGCAGCCTGTTTAGCAATTGGATTTGATGTGTTGTTGAAGATGTCAGGAAGGAAAATTCACCACTCTATGTTGCGTGTCCTTGTGGACTCCATAGACCCCAATGCATGTACTATAACTATGCACGGAAAGGAGATTGAAATGGATGCAAGTGACTTTGAAAATGTGATAGGGTTGAAGAATGCTGGGTCCGAGGTCGACTTTAAAGGTTCCGCTAATGATCACCCTGAGTTGATGGCGATAATAAACTCCTTGTGTGGGAAGGATAAGAAGATCAGTTTAAGGGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

277

Amino Acids

31.32

Weight (kDa)

8.87

Isoelectric Point (pI)

62.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 28, 74, 256
AccI GTMKAC 2 cut(s) 15, 738
AciI CCGC 4 cut(s) 5, 265, 502, 753
AclWI GGATC 1 cut(s) 298
AcsI RAATTY 2 cut(s) 213, 597
AcuI CTGAAG 2 cut(s) 417, 490
AfaI GTAC 2 cut(s) 153, 652
AfiI CCNNNNNNNGG 1 cut(s) 798
AgsI TTSAA 6 cut(s) 185, 347, 580, 680, 701, 718
AluBI AGCT 7 cut(s) 54, 116, 244, 302, 340, 388, 395
AluI AGCT 7 cut(s) 54, 116, 244, 302, 340, 388, 395
Alw26I GTCTC 2 cut(s) 198, 207
AlwI GGATC 1 cut(s) 298
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 2 cut(s) 99, 138
ApeKI GCWGC 4 cut(s) 51, 113, 163, 545
ApoI RAATTY 2 cut(s) 213, 597
Asp700I GAANNNNTTC 1 cut(s) 85
AspS9I GGNCC 3 cut(s) 100, 139, 729
AsuHPI GGTGA 3 cut(s) 296, 593, 755
AvaII GGWCC 1 cut(s) 729
BaeGI GKGCMC 1 cut(s) 79
BanI GGYRCC 3 cut(s) 28, 74, 256
BbvI GCAGC 4 cut(s) 63, 125, 150, 557
BccI CCATC 3 cut(s) 62, 127, 769
BceAI ACGGC 1 cut(s) 270
BclI TGATCA 1 cut(s) 760
BcoDI GTCTC 2 cut(s) 198, 207
BisI GCNGC 5 cut(s) 5, 52, 114, 164, 546
BlsI GCNGC 5 cut(s) 6, 53, 115, 165, 547
BmcAI AGTACT 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 729
BmgT120I GGNCC 3 cut(s) 100, 139, 729
BmiI GGNNCC 6 cut(s) 30, 76, 141, 258, 730, 751
BmsI GCATC 2 cut(s) 184, 676
BpmI CTGGAG 2 cut(s) 40, 480
BpuEI CTTGAG 1 cut(s) 485
Bsa29I ATCGAT 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 732
Bsc4I CCNNNNNNNGG 1 cut(s) 798
Bse1I ACTGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 427
BseDI CCNNGG 1 cut(s) 732
BseGI GGATG 2 cut(s) 691, 832
BseLI CCNNNNNNNGG 1 cut(s) 798
BseMII CTCAG 3 cut(s) 188, 441, 759
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 2 cut(s) 467, 470
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 4 cut(s) 63, 125, 150, 557
BseYI CCCAGC 1 cut(s) 725
BshFI GGCC 2 cut(s) 101, 140
BshNI GGYRCC 3 cut(s) 28, 74, 256
BshVI ATCGAT 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 798
BsmAI GTCTC 2 cut(s) 198, 207
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 2 cut(s) 101, 140
Bso31I GGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 5 cut(s) 125, 290, 424, 760, 813
BspACI CCGC 4 cut(s) 5, 265, 502, 753
BspANI GGCC 2 cut(s) 101, 140
BspCNI CTCAG 3 cut(s) 189, 442, 760
BspDI ATCGAT 1 cut(s) 427
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 6 cut(s) 30, 76, 141, 258, 730, 751
BspPI GGATC 1 cut(s) 298
BspT107I GGYRCC 3 cut(s) 28, 74, 256
BspTNI GGTCTC 1 cut(s) 207
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 732
BssMI GATC 5 cut(s) 125, 290, 424, 760, 813
Bst4CI ACNGT 2 cut(s) 192, 411
Bst6I CTCTTC 1 cut(s) 393
BstDEI CTNAG 3 cut(s) 197, 450, 768
BstF5I GGATG 2 cut(s) 691, 832
BstKTI GATC 5 cut(s) 128, 293, 427, 763, 816
BstMAI GTCTC 2 cut(s) 198, 207
BstMBI GATC 5 cut(s) 125, 290, 424, 760, 813
BstMWI GCNNNNNNNGC 2 cut(s) 172, 554
BstNSI RCATGY 1 cut(s) 651
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 4 cut(s) 63, 125, 150, 557
Bsu15I ATCGAT 1 cut(s) 427
BsuRI GGCC 2 cut(s) 101, 140
BsuTUI ATCGAT 1 cut(s) 427
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 2 cut(s) 691, 832
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 307
Cfr13I GGNCC 3 cut(s) 100, 139, 729
ClaI ATCGAT 1 cut(s) 427
Csp6I GTAC 2 cut(s) 152, 651
CviAII CATG 3 cut(s) 308, 335, 648
CviQI GTAC 2 cut(s) 152, 651
DdeI CTNAG 3 cut(s) 197, 450, 768
DpnI GATC 5 cut(s) 127, 292, 426, 762, 815
DpnII GATC 5 cut(s) 125, 290, 424, 760, 813
DraI TTTAAA 1 cut(s) 745
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco31I GGTCTC 1 cut(s) 207
Eco32I GATATC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 729
Eco57I CTGAAG 2 cut(s) 417, 490
EcoO109I RGGNCCY 2 cut(s) 100, 139
EcoRV GATATC 1 cut(s) 369
EcoT22I ATGCAT 1 cut(s) 649
FaeI CATG 3 cut(s) 311, 338, 651
FaiI YATR 8 cut(s) 309, 336, 414, 611, 635, 649, 656, 662
FatI CATG 3 cut(s) 307, 334, 647
FbaI TGATCA 1 cut(s) 760
FblI GTMKAC 2 cut(s) 15, 738
Fnu4HI GCNGC 5 cut(s) 5, 52, 114, 164, 546
FokI GGATG 1 cut(s) 698
Fsp4HI GCNGC 5 cut(s) 5, 52, 114, 164, 546
GluI GCNGC 5 cut(s) 5, 52, 114, 164, 546
GsaI CCCAGC 1 cut(s) 729
GsuI CTGGAG 2 cut(s) 40, 480
HaeIII GGCC 2 cut(s) 101, 140
Hin1II CATG 3 cut(s) 311, 338, 651
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 2 cut(s) 229, 629
HphI GGTGA 3 cut(s) 296, 593, 755
Hpy166II GTNNAC 4 cut(s) 16, 233, 628, 739
Hpy188I TCNGA 5 cut(s) 132, 198, 451, 477, 733
Hpy188III TCNNGA 5 cut(s) 90, 204, 308, 497, 588
Hpy8I GTNNAC 4 cut(s) 16, 233, 628, 739
HpyAV CCTTC 6 cut(s) 4, 19, 281, 397, 585, 796
HpyCH4III ACNGT 2 cut(s) 192, 411
HpyCH4V TGCA 4 cut(s) 521, 647, 664, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 554
HpyF3I CTNAG 3 cut(s) 197, 450, 768
Hsp92II CATG 3 cut(s) 311, 338, 651
Ksp22I TGATCA 1 cut(s) 760
Kzo9I GATC 5 cut(s) 125, 290, 424, 760, 813
LmnI GCTCC 2 cut(s) 59, 121
Lsp1109I GCAGC 4 cut(s) 63, 125, 150, 557
LweI GCATC 2 cut(s) 184, 676
MaeIII GTNAC 2 cut(s) 59, 692
MalI GATC 5 cut(s) 127, 292, 426, 762, 815
MboI GATC 5 cut(s) 125, 290, 424, 760, 813
MboII GAAGA 6 cut(s) 323, 326, 410, 592, 730, 823
MfeI CAATTG 1 cut(s) 558
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 4 cut(s) 213, 221, 558, 597
MlyI GAGTC 2 cut(s) 238, 623
Mph1103I ATGCAT 1 cut(s) 649
MroXI GAANNNNTTC 1 cut(s) 85
MseI TTAA 3 cut(s) 251, 744, 821
MspA1I CMGCKG 1 cut(s) 395
MunI CAATTG 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 727
MwoI GCNNNNNNNGC 2 cut(s) 172, 554
NdeII GATC 5 cut(s) 125, 290, 424, 760, 813
NlaIII CATG 3 cut(s) 311, 338, 651
NlaIV GGNNCC 6 cut(s) 30, 76, 141, 258, 730, 751
NmuCI GTSAC 1 cut(s) 692
NsiI ATGCAT 1 cut(s) 649
NspI RCATGY 1 cut(s) 651
PagI TCATGA 1 cut(s) 307
PcsI WCGNNNNNNNCGW 1 cut(s) 184
PctI GAATGC 1 cut(s) 727
PdmI GAANNNNTTC 1 cut(s) 85
PkrI GCNGC 5 cut(s) 6, 53, 115, 165, 547
PleI GAGTC 2 cut(s) 237, 623
PpsI GAGTC 2 cut(s) 237, 623
PspFI CCCAGC 1 cut(s) 725
PspN4I GGNNCC 6 cut(s) 30, 76, 141, 258, 730, 751
PspPI GGNCC 3 cut(s) 100, 139, 729
PstNI CAGNNNCTG 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 2 cut(s) 153, 652
RsaNI GTAC 2 cut(s) 152, 651
SalI GTCGAC 1 cut(s) 737
SaqAI TTAA 3 cut(s) 251, 744, 821
SatI GCNGC 5 cut(s) 5, 52, 114, 164, 546
Sau3AI GATC 5 cut(s) 125, 290, 424, 760, 813
Sau96I GGNCC 3 cut(s) 100, 139, 729
ScaI AGTACT 1 cut(s) 153
SchI GAGTC 2 cut(s) 238, 623
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 2 cut(s) 184, 676
SinI GGWCC 1 cut(s) 729
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 4 cut(s) 213, 221, 558, 597
SsiI CCGC 4 cut(s) 5, 265, 502, 753
TaaI ACNGT 2 cut(s) 192, 411
TaqI TCGA 5 cut(s) 205, 293, 358, 427, 738
TasI AATT 4 cut(s) 213, 221, 558, 597
TatI WGTACW 2 cut(s) 151, 650
TauI GCSGC 1 cut(s) 7
Tru1I TTAA 3 cut(s) 251, 744, 821
Tru9I TTAA 3 cut(s) 251, 744, 821
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 4 cut(s) 51, 113, 163, 545
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 1 cut(s) 324
TspGWI ACGGA 1 cut(s) 681
VpaK11BI GGWCC 1 cut(s) 729
XapI RAATTY 2 cut(s) 213, 597
XceI RCATGY 1 cut(s) 651
XmiI GTMKAC 2 cut(s) 15, 738
XmnI GAANNNNTTC 1 cut(s) 85
ZrmI AGTACT 1 cut(s) 153
Zsp2I ATGCAT 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.