Rh7CG267900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000269
Physical Location & Seq
Reverse (-)
26310682 .. 26311522
841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG267900.1

Sequence Viewer

Length: 669 bp
ATGCCTCCGAAGGTCTACACAAAGAAGGCACCTAAAAGGGCAAAACCAAGCAGCTCCAGTAACTCTGATGGAGGTGCCCGAAAGAGTTCTCAAATGGCGGCCCCTAAACTGAGCAACTCCACAACGATCTCCAATGGAGGCCCCCGAAAGAGTACTCGAATCGCCACCTCTAAAGCATCGGCTTCGGCGACGGTCTCTGAGGTCTCGAACCAAAATTCTCCAATTTTGGAGTCCGCAAAGAAAGCTTTTGTTAACGGCACCGAAGCCGTGGTTAAGGTACCTAAACTAAAACCTACTTCCGATGAAGCGGTAATTGAGGCACCGAAACCTACTTCCGATGATCCGGTGGTTGAGGCGGAGAAACCTCCTTCCAATGATACGCGGTCGCGAAAAGAGAAGGCACCAAAGGATTTAGAGTTGTCTGCCTCACCTGCCGAAGCCAAAGAGGTGAAGGATCGAAAGAAGCTCATCATGAAGAAGAAAGCCTCCAGTCGTTCCATGAGCTTTTTGAACTACCTGAACATTCAACACAAACAAATCAATCCCCCAGAACTAAACCATGATTTTCGAGTTGAGATATCTCAAAAATGGAAAGAGCTTCCAGCTGAAGAGAAGGAGCAGTATGTAGTGACTGATCGATGTGGTCAGTCATCAGTTTCTGAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.19

Weight (kDa)

9.65

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000269)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29141 FvH4_1g29142 FvH4_2g04882 FvH4_2g04883 FvH4_2g07612 FvH4_3g26550 FvH4_3g26551 FvH4_3g31781 FvH4_3g31810 FvH4_3g31812 FvH4_4g08580 FvH4_4g08581 FvH4_4g08649 FvH4_4g08910 FvH4_4g10124 FvH4_4g10125 FvH4_4g28760 FvH4_5g16042 FvH4_5g24070 FvH4_5g30680 FvH4_5g37871 FvH4_5g37872 FvH4_7g03531 FvH4_7g12891 FvH4_7g12892 FvH4_7g12893
rosa_chinensis RchiOBHm_Chr7g0204351
rosa_laevigata RLG00000001882 RLG00000002339 RLG00000004189 RLG00000009211 RLG00000009212 RLG00000013650 RLG00000019919 RLG00000019920 RLG00000019921 RLG00000020177 RLG00000020178 RLG00000023368 RLG00000028208 RLG00000029086 RLG00000029688 RLG00000032551 RLG00000034335 RLG00000034807
rosa_multiflora Rmu_sc0000308.1_g000017 Rmu_sc0000308.1_g000018 Rmu_sc0003422.1_g000004 Rmu_sc0003776.1_g000026 Rmu_sc0005399.1_g000010 Rmu_sc0005399.1_g000012 Rmu_sc0009924.1_g000004
rosa_roxburghii Rroxscaffold_1G00053720 Rroxscaffold_1G00053730 Rroxscaffold_1G00054020 Rroxscaffold_2G00133470 Rroxscaffold_2G00133480 Rroxscaffold_3G00229920 Rroxscaffold_3G00229930 Rroxscaffold_3G00229940 Rroxscaffold_3G00245890 Rroxscaffold_3G00245900 Rroxscaffold_4G00317860 Rroxscaffold_5G00346620 Rroxscaffold_6G00396640 Rroxscaffold_6G00396930 Rroxscaffold_6G00396940 Rroxscaffold_6G00401510 Rroxscaffold_7G00201920 Rroxscaffold_7G00201930 Rroxscaffold_7G00201940
rosa_rugosa Rorug01G0116700 Rorug01G0116700 Rorug04G0072900 Rorug04G0073000 Rorug04G0112000 Rorug07G0258800
rosa_samantha Rh1AG123800 Rh1AG297000 Rh1DG057400 Rh1DG057500 Rh1DG129000 Rh2BG298000 Rh2BG471200 Rh2BG471300 Rh2BG471400 Rh2BG621400 Rh3CG245500 Rh3CG245600 Rh4DG157200 Rh4DG157300 Rh4DG157400 Rh4DG157500 Rh4DG157600 Rh4DG157700 Rh5DG402200 Rh6AG050900 Rh6AG051000 Rh6AG088400 Rh6AG088500 Rh6AG088600 Rh6AG088700 Rh6AG139800 Rh6AG139900 Rh6AG140000 Rh6CG077200 Rh6CG077300 Rh6CG077400 Rh6CG077500 Rh7CG225300 Rh7CG225400 Rh7CG225500 Rh7CG225600 Rh7CG267500 Rh7CG267600 Rh7CG267800 Rh7CG267900 Rh7CG338700 Rh7CG338800 Rh7CG338900 Rh7CG430900 Rh7CG431000 Rh7CG431100 Rh7DG219700 Rh7DG219800 Rh7DG219900 Rh7DG220000 Rh7DG257600 Rh7DG271500 Rh7DG367700 Rh7DG408600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 439
Acc36I ACCTGC 1 cut(s) 439
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 6 cut(s) 28, 74, 257, 277, 319, 400
AccI GTMKAC 1 cut(s) 15
AccII CGCG 2 cut(s) 382, 388
AciI CCGC 5 cut(s) 98, 234, 308, 356, 382
AclWI GGATC 2 cut(s) 335, 462
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 2 cut(s) 154, 279
AgsI TTSAA 2 cut(s) 511, 527
AluBI AGCT 6 cut(s) 54, 245, 466, 504, 598, 605
AluI AGCT 6 cut(s) 54, 245, 466, 504, 598, 605
Alw26I GTCTC 2 cut(s) 199, 208
AlwI GGATC 2 cut(s) 335, 462
AlwNI CAGNNNCTG 1 cut(s) 659
AoxI GGCC 2 cut(s) 99, 139
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 214
Asp700I GAANNNNTTC 1 cut(s) 85
Asp718I GGTACC 1 cut(s) 277
AspS9I GGNCC 2 cut(s) 100, 140
AsuHPI GGTGA 2 cut(s) 420, 460
BaeGI GKGCMC 1 cut(s) 79
BanI GGYRCC 6 cut(s) 28, 74, 257, 277, 319, 400
BbvI GCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 62
BceAI ACGGC 2 cut(s) 251, 271
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BcoDI GTCTC 2 cut(s) 199, 208
BfuAI ACCTGC 1 cut(s) 439
BisI GCNGC 2 cut(s) 52, 99
BlsI GCNGC 2 cut(s) 53, 100
BmcAI AGTACT 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 100, 140
BmiI GGNNCC 8 cut(s) 30, 76, 102, 142, 259, 279, 321, 402
BmsI GCATC 1 cut(s) 185
BpmI CTGGAG 2 cut(s) 40, 472
Bsa29I ATCGAT 1 cut(s) 637
BsaI GGTCTC 2 cut(s) 199, 208
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 343
Bse1I ACTGG 2 cut(s) 57, 489
BseCI ATCGAT 1 cut(s) 637
BseDI CCNNGG 1 cut(s) 267
BseMII CTCAG 3 cut(s) 101, 189, 651
BseNI ACTGG 2 cut(s) 57, 489
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 63
Bsh1236I CGCG 2 cut(s) 382, 388
Bsh1285I CGRYCG 1 cut(s) 386
BshFI GGCC 2 cut(s) 101, 141
BshNI GGYRCC 6 cut(s) 28, 74, 257, 277, 319, 400
BshVI ATCGAT 1 cut(s) 637
BsiEI CGRYCG 1 cut(s) 386
BsiSI CCGG 1 cut(s) 344
BsmAI GTCTC 2 cut(s) 199, 208
BsnI GGCC 2 cut(s) 101, 141
Bso31I GGTCTC 2 cut(s) 199, 208
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 4 cut(s) 126, 340, 454, 634
Bsp68I TCGCGA 1 cut(s) 388
BspACI CCGC 5 cut(s) 98, 234, 308, 356, 382
BspANI GGCC 2 cut(s) 101, 141
BspCNI CTCAG 3 cut(s) 102, 190, 652
BspDI ATCGAT 1 cut(s) 637
BspFNI CGCG 2 cut(s) 382, 388
BspHI TCATGA 1 cut(s) 471
BspLI GGNNCC 8 cut(s) 30, 76, 102, 142, 259, 279, 321, 402
BspMI ACCTGC 1 cut(s) 439
BspPI GGATC 2 cut(s) 335, 462
BspT107I GGYRCC 6 cut(s) 28, 74, 257, 277, 319, 400
BspTNI GGTCTC 2 cut(s) 199, 208
BsrI ACTGG 2 cut(s) 57, 489
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 4 cut(s) 126, 340, 454, 634
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 603
BstDEI CTNAG 3 cut(s) 110, 198, 660
BstDSI CCRYGG 1 cut(s) 267
BstFNI CGCG 2 cut(s) 382, 388
BstKTI GATC 4 cut(s) 129, 343, 457, 637
BstMAI GTCTC 2 cut(s) 199, 208
BstMBI GATC 4 cut(s) 126, 340, 454, 634
BstMCI CGRYCG 1 cut(s) 386
BstMWI GCNNNNNNNGC 2 cut(s) 242, 431
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 2 cut(s) 382, 388
BstV1I GCAGC 1 cut(s) 63
Bsu15I ATCGAT 1 cut(s) 637
BsuRI GGCC 2 cut(s) 101, 141
BsuTUI ATCGAT 1 cut(s) 637
BtgI CCRYGG 1 cut(s) 267
BtuMI TCGCGA 1 cut(s) 388
BveI ACCTGC 1 cut(s) 439
CaiI CAGNNNCTG 1 cut(s) 659
CciI TCATGA 1 cut(s) 471
Cfr13I GGNCC 2 cut(s) 100, 140
ClaI ATCGAT 1 cut(s) 637
Csp6I GTAC 2 cut(s) 153, 278
CviAII CATG 3 cut(s) 472, 499, 560
CviQI GTAC 2 cut(s) 153, 278
DdeI CTNAG 3 cut(s) 110, 198, 660
DpnI GATC 4 cut(s) 128, 342, 456, 636
DpnII GATC 4 cut(s) 126, 340, 454, 634
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
EciI GGCGGA 1 cut(s) 371
Eco31I GGTCTC 2 cut(s) 199, 208
Eco32I GATATC 1 cut(s) 579
Eco57I CTGAAG 1 cut(s) 627
EcoO109I RGGNCCY 1 cut(s) 140
EcoRV GATATC 1 cut(s) 579
FaeI CATG 3 cut(s) 475, 502, 563
FaiI YATR 4 cut(s) 473, 500, 561, 624
FatI CATG 3 cut(s) 471, 498, 559
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 52, 99
Fsp4HI GCNGC 2 cut(s) 52, 99
GluI GCNGC 2 cut(s) 52, 99
GsuI CTGGAG 2 cut(s) 40, 472
HaeIII GGCC 2 cut(s) 101, 141
HapII CCGG 1 cut(s) 344
Hin1II CATG 3 cut(s) 475, 502, 563
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 2 cut(s) 159, 230
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 1 cut(s) 344
HphI GGTGA 2 cut(s) 420, 460
Hpy166II GTNNAC 2 cut(s) 16, 253
Hpy188I TCNGA 6 cut(s) 9, 67, 199, 301, 337, 661
Hpy188III TCNNGA 3 cut(s) 205, 387, 472
Hpy8I GTNNAC 2 cut(s) 16, 253
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 6 cut(s) 4, 19, 378, 391, 445, 607
HpyCH4III ACNGT 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 431
HpyF3I CTNAG 3 cut(s) 110, 198, 660
Hsp92II CATG 3 cut(s) 475, 502, 563
KpnI GGTACC 1 cut(s) 281
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 4 cut(s) 126, 340, 454, 634
LmnI GCTCC 2 cut(s) 59, 616
LpnPI CCDG 7 cut(s) 70, 357, 444, 502, 530, 561, 615
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 185
MaeIII GTNAC 2 cut(s) 59, 628
MalI GATC 4 cut(s) 128, 342, 456, 636
MboI GATC 4 cut(s) 126, 340, 454, 634
MboII GAAGA 3 cut(s) 487, 490, 620
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 3 cut(s) 214, 222, 312
MlyI GAGTC 1 cut(s) 239
MroXI GAANNNNTTC 1 cut(s) 85
MseI TTAA 2 cut(s) 252, 273
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 1 cut(s) 344
MvnI CGCG 2 cut(s) 382, 388
MwoI GCNNNNNNNGC 2 cut(s) 242, 431
NdeII GATC 4 cut(s) 126, 340, 454, 634
NlaIII CATG 3 cut(s) 475, 502, 563
NlaIV GGNNCC 8 cut(s) 30, 76, 102, 142, 259, 279, 321, 402
NmuCI GTSAC 1 cut(s) 628
NruI TCGCGA 1 cut(s) 388
PagI TCATGA 1 cut(s) 471
PaqCI CACCTGC 1 cut(s) 439
PcsI WCGNNNNNNNCGW 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 53, 100
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspN4I GGNNCC 8 cut(s) 30, 76, 102, 142, 259, 279, 321, 402
PspPI GGNCC 2 cut(s) 100, 140
PstNI CAGNNNCTG 1 cut(s) 659
PvuII CAGCTG 1 cut(s) 605
RruI TCGCGA 1 cut(s) 388
RsaI GTAC 2 cut(s) 154, 279
RsaNI GTAC 2 cut(s) 153, 278
SaqAI TTAA 2 cut(s) 252, 273
SatI GCNGC 2 cut(s) 52, 99
Sau3AI GATC 4 cut(s) 126, 340, 454, 634
Sau96I GGNCC 2 cut(s) 100, 140
ScaI AGTACT 1 cut(s) 154
SchI GAGTC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 185
Sse9I AATT 3 cut(s) 214, 222, 312
SsiI CCGC 5 cut(s) 98, 234, 308, 356, 382
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 5 cut(s) 157, 206, 457, 568, 637
TasI AATT 3 cut(s) 214, 222, 312
TatI WGTACW 1 cut(s) 152
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 2 cut(s) 252, 273
Tru9I TTAA 2 cut(s) 252, 273
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 1 cut(s) 51
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 2 cut(s) 318, 488
XapI RAATTY 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 85
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.