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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1230 |
| Acc65I | GGTACC | 1 cut(s) | 1239 |
| AccB1I | GGYRCC | 1 cut(s) | 1239 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 980 |
| AccI | GTMKAC | 1 cut(s) | 54 |
| AciI | CCGC | 2 cut(s) | 459, 1335 |
| AclWI | GGATC | 2 cut(s) | 1390, 1484 |
| AcoI | YGGCCR | 1 cut(s) | 1499 |
| AcsI | RAATTY | 2 cut(s) | 15, 1454 |
| AcuI | CTGAAG | 3 cut(s) | 281, 344, 1209 |
| AcyI | GRCGYC | 1 cut(s) | 1227 |
| AfaI | GTAC | 5 cut(s) | 70, 536, 978, 1241, 1419 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 216, 565, 980 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 445 |
| AjnI | CCWGG | 1 cut(s) | 537 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 329, 361 |
| AluBI | AGCT | 5 cut(s) | 375, 548, 889, 1290, 1607 |
| AluI | AGCT | 5 cut(s) | 375, 548, 889, 1290, 1607 |
| Alw21I | GWGCWC | 2 cut(s) | 1164, 1609 |
| Alw26I | GTCTC | 2 cut(s) | 1262, 1300 |
| AlwI | GGATC | 2 cut(s) | 1390, 1484 |
| AoxI | GGCC | 3 cut(s) | 348, 417, 1499 |
| ApeKI | GCWGC | 1 cut(s) | 1553 |
| ApoI | RAATTY | 2 cut(s) | 15, 1454 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 618, 1454 |
| Asp718I | GGTACC | 1 cut(s) | 1239 |
| AspLEI | GCGC | 1 cut(s) | 297 |
| AspS9I | GGNCC | 3 cut(s) | 349, 556, 1566 |
| AsuHPI | GGTGA | 4 cut(s) | 11, 173, 598, 691 |
| AvaII | GGWCC | 2 cut(s) | 556, 1566 |
| BanI | GGYRCC | 1 cut(s) | 1239 |
| BanII | GRGCYC | 1 cut(s) | 1609 |
| BbsI | GAAGAC | 4 cut(s) | 518, 993, 1013, 1491 |
| Bbv12I | GWGCWC | 2 cut(s) | 1164, 1609 |
| BbvI | GCAGC | 1 cut(s) | 1565 |
| BccI | CCATC | 9 cut(s) | 98, 121, 187, 319, 406, 428, 754, 763, 836 |
| BciT130I | CCWGG | 1 cut(s) | 539 |
| BclI | TGATCA | 2 cut(s) | 178, 1359 |
| BcoDI | GTCTC | 2 cut(s) | 1262, 1300 |
| BfmI | CTRYAG | 1 cut(s) | 1041 |
| BfoI | RGCGCY | 1 cut(s) | 298 |
| BisI | GCNGC | 1 cut(s) | 1554 |
| BlsI | GCNGC | 1 cut(s) | 1555 |
| Bme1390I | CCNGG | 1 cut(s) | 539 |
| Bme18I | GGWCC | 2 cut(s) | 556, 1566 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 445 |
| BmgT120I | GGNCC | 3 cut(s) | 349, 556, 1566 |
| BmiI | GGNNCC | 4 cut(s) | 169, 557, 1241, 1567 |
| BmrFI | CCNGG | 1 cut(s) | 539 |
| BmrI | ACTGGG | 1 cut(s) | 394 |
| BmsI | GCATC | 4 cut(s) | 1066, 1264, 1405, 1637 |
| BmuI | ACTGGG | 1 cut(s) | 394 |
| BoxI | GACNNNNGTC | 1 cut(s) | 363 |
| BpiI | GAAGAC | 4 cut(s) | 518, 993, 1013, 1491 |
| BpmI | CTGGAG | 1 cut(s) | 911 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1163 |
| BpuEI | CTTGAG | 1 cut(s) | 802 |
| BsaHI | GRCGYC | 1 cut(s) | 1227 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 895, 925 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 216, 565, 980 |
| Bse1I | ACTGG | 2 cut(s) | 389, 974 |
| BseBI | CCWGG | 1 cut(s) | 539 |
| BseGI | GGATG | 3 cut(s) | 109, 250, 616 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 216, 565, 980 |
| BseMII | CTCAG | 6 cut(s) | 141, 458, 737, 1177, 1377, 1422 |
| BseNI | ACTGG | 2 cut(s) | 389, 974 |
| BseRI | GAGGAG | 1 cut(s) | 1157 |
| BseXI | GCAGC | 1 cut(s) | 1565 |
| BseYI | CCCAGC | 1 cut(s) | 143 |
| BsgI | GTGCAG | 2 cut(s) | 269, 948 |
| BshFI | GGCC | 3 cut(s) | 350, 419, 1501 |
| BshNI | GGYRCC | 1 cut(s) | 1239 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1164, 1609 |
| BslFI | GGGAC | 2 cut(s) | 569, 1579 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 216, 565, 980 |
| BsmAI | GTCTC | 2 cut(s) | 1262, 1300 |
| BsmBI | CGTCTC | 1 cut(s) | 1300 |
| BsmFI | GGGAC | 2 cut(s) | 569, 1579 |
| BsmI | GAATGC | 1 cut(s) | 145 |
| BsnI | GGCC | 3 cut(s) | 350, 419, 1501 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1164, 1609 |
| Bsp143I | GATC | 7 cut(s) | 178, 231, 658, 1135, 1359, 1382, 1476 |
| BspACI | CCGC | 2 cut(s) | 459, 1335 |
| BspANI | GGCC | 3 cut(s) | 350, 419, 1501 |
| BspCNI | CTCAG | 6 cut(s) | 142, 457, 738, 1176, 1378, 1421 |
| BspLI | GGNNCC | 4 cut(s) | 169, 557, 1241, 1567 |
| BspPI | GGATC | 2 cut(s) | 1390, 1484 |
| BspT107I | GGYRCC | 1 cut(s) | 1239 |
| BsrI | ACTGG | 2 cut(s) | 389, 974 |
| BssMI | GATC | 7 cut(s) | 178, 231, 658, 1135, 1359, 1382, 1476 |
| BssNI | GRCGYC | 1 cut(s) | 1227 |
| Bst2UI | CCWGG | 1 cut(s) | 539 |
| Bst4CI | ACNGT | 3 cut(s) | 483, 1346, 1570 |
| Bst6I | CTCTTC | 2 cut(s) | 1185, 1407 |
| BstACI | GRCGYC | 1 cut(s) | 1227 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 940 |
| BstC8I | GCNNGC | 1 cut(s) | 1333 |
| BstDEI | CTNAG | 8 cut(s) | 150, 444, 746, 1163, 1291, 1386, 1408, 1524 |
| BstF5I | GGATG | 3 cut(s) | 109, 250, 616 |
| BstH2I | RGCGCY | 1 cut(s) | 298 |
| BstHHI | GCGC | 1 cut(s) | 297 |
| BstKTI | GATC | 7 cut(s) | 181, 234, 661, 1138, 1362, 1385, 1479 |
| BstMAI | GTCTC | 2 cut(s) | 1262, 1300 |
| BstMBI | GATC | 7 cut(s) | 178, 231, 658, 1135, 1359, 1382, 1476 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 940 |
| BstNI | CCWGG | 1 cut(s) | 539 |
| BstNSI | RCATGY | 2 cut(s) | 69, 1372 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 363 |
| BstSCI | CCNGG | 1 cut(s) | 537 |
| BstSFI | CTRYAG | 1 cut(s) | 1041 |
| BstV1I | GCAGC | 1 cut(s) | 1565 |
| BstV2I | GAAGAC | 4 cut(s) | 518, 993, 1013, 1491 |
| BstX2I | RGATCY | 1 cut(s) | 1382 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 339, 1441 |
| BstYI | RGATCY | 1 cut(s) | 1382 |
| BsuRI | GGCC | 3 cut(s) | 350, 419, 1501 |
| BtsCI | GGATG | 3 cut(s) | 109, 250, 616 |
| BtsI | GCAGTG | 2 cut(s) | 936, 1379 |
| BtsIMutI | CAGTG | 4 cut(s) | 320, 936, 1052, 1379 |
| Cac8I | GCNNGC | 1 cut(s) | 1333 |
| CfoI | GCGC | 1 cut(s) | 297 |
| Cfr13I | GGNCC | 3 cut(s) | 349, 556, 1566 |
| CsiI | ACCWGGT | 1 cut(s) | 537 |
| Csp6I | GTAC | 5 cut(s) | 69, 535, 977, 1240, 1418 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 886, 921 |
| CviAII | CATG | 9 cut(s) | 66, 83, 185, 506, 560, 980, 1223, 1369, 1423 |
| CviQI | GTAC | 5 cut(s) | 69, 535, 977, 1240, 1418 |
| DdeI | CTNAG | 8 cut(s) | 150, 444, 746, 1163, 1291, 1386, 1408, 1524 |
| DpnI | GATC | 7 cut(s) | 180, 233, 660, 1137, 1361, 1384, 1478 |
| DpnII | GATC | 7 cut(s) | 178, 231, 658, 1135, 1359, 1382, 1476 |
| DraI | TTTAAA | 2 cut(s) | 163, 381 |
| DriI | GACNNNNNGTC | 1 cut(s) | 445 |
| EaeI | YGGCCR | 1 cut(s) | 1499 |
| Eam1104I | CTCTTC | 2 cut(s) | 1185, 1407 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 445 |
| EarI | CTCTTC | 2 cut(s) | 1185, 1407 |
| Ecl136II | GAGCTC | 1 cut(s) | 1607 |
| Eco24I | GRGCYC | 1 cut(s) | 1609 |
| Eco47I | GGWCC | 2 cut(s) | 556, 1566 |
| Eco53kI | GAGCTC | 1 cut(s) | 1607 |
| Eco57I | CTGAAG | 3 cut(s) | 281, 344, 1209 |
| EcoICRI | GAGCTC | 1 cut(s) | 1607 |
| EcoRII | CCWGG | 1 cut(s) | 537 |
| EcoT22I | ATGCAT | 3 cut(s) | 67, 84, 1224 |
| EcoT38I | GRGCYC | 1 cut(s) | 1609 |
| Esp3I | CGTCTC | 1 cut(s) | 1300 |
| FaeI | CATG | 9 cut(s) | 69, 86, 188, 509, 563, 983, 1226, 1372, 1426 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 998, 1030 |
| FaqI | GGGAC | 2 cut(s) | 569, 1579 |
| FatI | CATG | 9 cut(s) | 65, 82, 184, 505, 559, 979, 1222, 1368, 1422 |
| FauNDI | CATATG | 1 cut(s) | 673 |
| FbaI | TGATCA | 2 cut(s) | 178, 1359 |
| FblI | GTMKAC | 1 cut(s) | 54 |
| Fnu4HI | GCNGC | 1 cut(s) | 1554 |
| FokI | GGATG | 3 cut(s) | 116, 257, 623 |
| FriOI | GRGCYC | 1 cut(s) | 1609 |
| Fsp4HI | GCNGC | 1 cut(s) | 1554 |
| GlaI | GCGC | 1 cut(s) | 296 |
| GluI | GCNGC | 1 cut(s) | 1554 |
| GsaI | CCCAGC | 1 cut(s) | 147 |
| GsuI | CTGGAG | 1 cut(s) | 911 |
| HaeII | RGCGCY | 1 cut(s) | 298 |
| HaeIII | GGCC | 3 cut(s) | 350, 419, 1501 |
| HhaI | GCGC | 1 cut(s) | 297 |
| Hin1I | GRCGYC | 1 cut(s) | 1227 |
| Hin1II | CATG | 9 cut(s) | 69, 86, 188, 509, 563, 983, 1226, 1372, 1426 |
| Hin6I | GCGC | 1 cut(s) | 295 |
| HinP1I | GCGC | 1 cut(s) | 295 |
| HincII | GTYRAC | 3 cut(s) | 157, 280, 1185 |
| HindII | GTYRAC | 3 cut(s) | 157, 280, 1185 |
| HindIII | AAGCTT | 1 cut(s) | 546 |
| HinfI | GANTC | 5 cut(s) | 47, 206, 440, 1031, 1315 |
| HphI | GGTGA | 4 cut(s) | 11, 173, 598, 691 |
| Hpy166II | GTNNAC | 6 cut(s) | 46, 55, 157, 280, 589, 1185 |
| Hpy188III | TCNNGA | 4 cut(s) | 6, 781, 1139, 1259 |
| Hpy8I | GTNNAC | 6 cut(s) | 46, 55, 157, 280, 589, 1185 |
| HpyAV | CCTTC | 6 cut(s) | 3, 214, 256, 842, 1189, 1649 |
| HpyCH4III | ACNGT | 3 cut(s) | 483, 1346, 1570 |
| HpyCH4IV | ACGT | 1 cut(s) | 1227 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 940 |
| HpyF3I | CTNAG | 8 cut(s) | 150, 444, 746, 1163, 1291, 1386, 1408, 1524 |
| HpySE526I | ACGT | 1 cut(s) | 1227 |
| Hsp92I | GRCGYC | 1 cut(s) | 1227 |
| Hsp92II | CATG | 9 cut(s) | 69, 86, 188, 509, 563, 983, 1226, 1372, 1426 |
| HspAI | GCGC | 1 cut(s) | 295 |
| KpnI | GGTACC | 1 cut(s) | 1243 |
| Ksp22I | TGATCA | 2 cut(s) | 178, 1359 |
| Kzo9I | GATC | 7 cut(s) | 178, 231, 658, 1135, 1359, 1382, 1476 |
| Lsp1109I | GCAGC | 1 cut(s) | 1565 |
| LweI | GCATC | 4 cut(s) | 1066, 1264, 1405, 1637 |
| MabI | ACCWGGT | 1 cut(s) | 537 |
| MaeII | ACGT | 1 cut(s) | 1227 |
| MaeIII | GTNAC | 5 cut(s) | 110, 969, 1050, 1115, 1298 |
| MalI | GATC | 7 cut(s) | 180, 233, 660, 1137, 1361, 1384, 1478 |
| MboI | GATC | 7 cut(s) | 178, 231, 658, 1135, 1359, 1382, 1476 |
| MfeI | CAATTG | 1 cut(s) | 493 |
| MflI | RGATCY | 1 cut(s) | 1382 |
| MhlI | GDGCHC | 2 cut(s) | 1164, 1609 |
| MluCI | AATT | 6 cut(s) | 15, 493, 857, 1110, 1439, 1454 |
| MlyI | GAGTC | 4 cut(s) | 41, 200, 434, 1025 |
| MmeI | TCCRAC | 1 cut(s) | 1612 |
| Mph1103I | ATGCAT | 3 cut(s) | 67, 84, 1224 |
| MroXI | GAANNNNTTC | 2 cut(s) | 618, 1454 |
| MseI | TTAA | 7 cut(s) | 162, 239, 380, 684, 1404, 1430, 1437 |
| MslI | CAYNNNNRTG | 3 cut(s) | 403, 1217, 1510 |
| MspR9I | CCNGG | 1 cut(s) | 539 |
| MunI | CAATTG | 1 cut(s) | 493 |
| Mva1269I | GAATGC | 1 cut(s) | 145 |
| MvaI | CCWGG | 1 cut(s) | 539 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 940 |
| NdeI | CATATG | 1 cut(s) | 673 |
| NdeII | GATC | 7 cut(s) | 178, 231, 658, 1135, 1359, 1382, 1476 |
| NlaIII | CATG | 9 cut(s) | 69, 86, 188, 509, 563, 983, 1226, 1372, 1426 |
| NlaIV | GGNNCC | 4 cut(s) | 169, 557, 1241, 1567 |
| NmeAIII | GCCGAG | 1 cut(s) | 1477 |
| NmuCI | GTSAC | 2 cut(s) | 110, 1050 |
| NsiI | ATGCAT | 3 cut(s) | 67, 84, 1224 |
| NspI | RCATGY | 2 cut(s) | 69, 1372 |
| PctI | GAATGC | 1 cut(s) | 145 |
| PdmI | GAANNNNTTC | 2 cut(s) | 618, 1454 |
| PfeI | GAWTC | 1 cut(s) | 1315 |
| PflFI | GACNNNGTC | 1 cut(s) | 776 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 980 |
| PkrI | GCNGC | 1 cut(s) | 1555 |
| PleI | GAGTC | 4 cut(s) | 41, 200, 434, 1025 |
| PpsI | GAGTC | 4 cut(s) | 41, 200, 434, 1025 |
| PshAI | GACNNNNGTC | 1 cut(s) | 363 |
| Psp124BI | GAGCTC | 1 cut(s) | 1609 |
| Psp6I | CCWGG | 1 cut(s) | 537 |
| PspFI | CCCAGC | 1 cut(s) | 143 |
| PspGI | CCWGG | 1 cut(s) | 537 |
| PspN4I | GGNNCC | 4 cut(s) | 169, 557, 1241, 1567 |
| PspPI | GGNCC | 3 cut(s) | 349, 556, 1566 |
| PsuI | RGATCY | 1 cut(s) | 1382 |
| PsyI | GACNNNGTC | 1 cut(s) | 776 |
| RsaI | GTAC | 5 cut(s) | 70, 536, 978, 1241, 1419 |
| RsaNI | GTAC | 5 cut(s) | 69, 535, 977, 1240, 1418 |
| RseI | CAYNNNNRTG | 3 cut(s) | 403, 1217, 1510 |
| SacI | GAGCTC | 1 cut(s) | 1609 |
| SaqAI | TTAA | 7 cut(s) | 162, 239, 380, 684, 1404, 1430, 1437 |
| SatI | GCNGC | 1 cut(s) | 1554 |
| Sau3AI | GATC | 7 cut(s) | 178, 231, 658, 1135, 1359, 1382, 1476 |
| Sau96I | GGNCC | 3 cut(s) | 349, 556, 1566 |
| SchI | GAGTC | 4 cut(s) | 41, 200, 434, 1025 |
| ScrFI | CCNGG | 1 cut(s) | 539 |
| SduI | GDGCHC | 2 cut(s) | 1164, 1609 |
| SexAI | ACCWGGT | 1 cut(s) | 537 |
| SfaNI | GCATC | 4 cut(s) | 1066, 1264, 1405, 1637 |
| SfcI | CTRYAG | 1 cut(s) | 1041 |
| SinI | GGWCC | 2 cut(s) | 556, 1566 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 403, 1217, 1510 |
| SmlI | CTYRAG | 1 cut(s) | 781 |
| SmoI | CTYRAG | 1 cut(s) | 781 |
| Sse9I | AATT | 6 cut(s) | 15, 493, 857, 1110, 1439, 1454 |
| SsiI | CCGC | 2 cut(s) | 459, 1335 |
| SstI | GAGCTC | 1 cut(s) | 1609 |
| StyD4I | CCNGG | 1 cut(s) | 537 |
| TaaI | ACNGT | 3 cut(s) | 483, 1346, 1570 |
| TaiI | ACGT | 1 cut(s) | 1230 |
| TaqI | TCGA | 1 cut(s) | 1479 |
| TasI | AATT | 6 cut(s) | 15, 493, 857, 1110, 1439, 1454 |
| TatI | WGTACW | 2 cut(s) | 68, 976 |
| TfiI | GAWTC | 1 cut(s) | 1315 |
| Tru1I | TTAA | 7 cut(s) | 162, 239, 380, 684, 1404, 1430, 1437 |
| Tru9I | TTAA | 7 cut(s) | 162, 239, 380, 684, 1404, 1430, 1437 |
| TscAI | CASTG | 4 cut(s) | 327, 936, 1059, 1379 |
| TseFI | GTSAC | 2 cut(s) | 110, 1050 |
| TseI | GCWGC | 1 cut(s) | 1553 |
| Tsp45I | GTSAC | 2 cut(s) | 110, 1050 |
| TspDTI | ATGAA | 5 cut(s) | 576, 627, 1079, 1201, 1328 |
| TspGWI | ACGGA | 2 cut(s) | 40, 910 |
| TspRI | CASTG | 4 cut(s) | 327, 936, 1059, 1379 |
| Tth111I | GACNNNGTC | 1 cut(s) | 776 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 980 |
| VpaK11BI | GGWCC | 2 cut(s) | 556, 1566 |
| XapI | RAATTY | 2 cut(s) | 15, 1454 |
| XceI | RCATGY | 2 cut(s) | 69, 1372 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1621 |
| XmiI | GTMKAC | 1 cut(s) | 54 |
| XmnI | GAANNNNTTC | 2 cut(s) | 618, 1454 |
| ZraI | GACGTC | 1 cut(s) | 1228 |
| Zsp2I | ATGCAT | 3 cut(s) | 67, 84, 1224 |